ef30dc4c36
gnu: Add ergodox-firmware-colemak-symbol-mod.
...
* gnu/packages/firmware.scm (ergodox-firmware-colemak-symbol-mod): New variable.
2023-10-10 00:06:14 -04:00
9e4008e36e
gnu: Add ergodox-firmware-colemak-jc-mod.
...
* gnu/packages/firmware.scm (make-ergodox-firmware): New procedure
(ergodox-firmware-colemak-jc-mod): New variable.
* gnu/packages/patches/ergodox-firmware-fix-json-target.patch: New file.
* gnu/packages/patches/ergodox-firmware-fix-numpad.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
2023-10-10 00:06:14 -04:00
f110992686
gnu: Add qmk-firmware-ergodox-ez-dvorak-emacs-software.
...
* gnu/packages/firmware.scm
(qmk-firmware-ergodox-ez-dvorak-emacs-software): New variable.
2023-10-10 00:06:14 -04:00
2aa497e23c
gnu: Add qmk-firmware-ergodox-ez-dvorak-emacs.
...
* gnu/packages/firmware.scm (qmk-firmware-ergodox-ez-dvorak-emacs): New variable.
2023-10-10 00:06:14 -04:00
b78aab0739
gnu: Add qmk-firmware-ergodox-ez-dvorak.
...
* gnu/packages/firmware.scm (qmk-firmware-ergodox-ez-dvorak): New variable.
2023-10-10 00:06:14 -04:00
75cb7e1866
gnu: Add qmk-firmware-ergodox-ez-hacker-dvorak.
...
* gnu/packages/firmware.scm (qmk-firmware-ergodox-ez-hacker-dvorak): New
variable.
* gnu/packages/patches/qmk-firmware-fix-hacker-dvorak.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-10-10 00:06:14 -04:00
8dd6c2dee8
gnu: Add qmk-udev-rules.
...
* gnu/packages/firmware.scm (qmk-udev-rules): New variable.
2023-10-10 00:06:13 -04:00
2f0e21e9fa
gnu: Add qmk-firmware-ergodox-ez-dvorak-42-key.
...
* gnu/packages/firmware.scm (qmk-firmware-ergodox-ez-dvorak-42-key): New variable.
2023-10-10 00:06:13 -04:00
26025fa802
gnu: Add qmk-firmware-ergodox-ez-default.
...
* gnu/packages/firmware.scm (make-qmk-firmware/implementation)
(make-qmk-firmware): New procedures.
(qmk-firmware-ergodox-ez-default): New variable.
Series-changes: 2
- Install firmware from root directory, not .build
- Also honor .bin and .uf2 firmware file extensions
2023-10-10 00:06:13 -04:00
a1ce7487d3
gnu: embedded: Do not use a prefix on the (gnu packages base) module.
...
This can in some cases hide the real error with errors such as:
error: base:which: unbound variable
* gnu/packages/embedded.scm (openocd) [native-inputs]: Replace base:which with
which.
(binutils-vc4): Likewise.
(python-libmpsse): Likewise.
2023-10-10 00:06:13 -04:00
1cb7404fee
gnu: Add lufa.
...
* gnu/packages/avr-xyz.scm (lufa): New variable.
2023-10-10 00:06:13 -04:00
45be44bf3d
gnu: qmk: Add many missing inputs and add more commands to PATH.
...
* gnu/packages/firmware.scm (qmk) [inputs]: Add bash-minimal, dfu-util,
diffutils, gawk, gnu-make, grep and python.
[arguments]: Add them to PATH in the wrapper in the wrap-path phase. Also
capture avr-ar in the PATH. Add CROSS_C_INCLUDE_PATH and
CROSS_LIBRARY_PATH to the wrapper.
2023-10-10 00:06:13 -04:00
261a1f902a
gnu: qmk: Use GCC 8 for the AVR toolchain.
...
* gnu/packages/firmware.scm (qmk) [inputs]: Specify 'gcc-8' as the #:xgcc
argument to the 'make-avr-toolchain' procedure.
2023-10-10 00:06:12 -04:00
431d64bae2
gnu: qmk: Avoid propagating inputs.
...
* gnu/packages/firmware.scm (qmk):
[arguments]: New modules and phases arguments.
[propagated-inputs]: Turn into...
[inputs]: ... this. Add coreutils-minimal, sed and util-linux.
[description]: Expound.
2023-10-10 00:06:12 -04:00
077f7bd235
gnu: qmk: Style.
...
* gnu/packages/firmware.scm (qmk): Apply 'guix style' changes.
2023-10-10 00:06:12 -04:00
4af820b9ef
gnu: make-avr-toolchain: Add a #:xgcc argument.
...
This allows generating an AVR toolchain for any version of GCC.
* gnu/packages/avr.scm (make-avr-gcc): Add a #:xgcc argument; use memoize
instead of mlambda.
(make-avr-libc): Likewise. Provide it to the 'make-avr-gcc' call.
(make-avr-toolchain): Add a #:xgcc argument; use memoize instead of mlambda.
Provide the xgcc argument to the 'make-avr-libc' and 'make-avr-gcc'
procedures.
2023-10-10 00:06:12 -04:00
53fd3989d3
gnu: r-deoptimr: Update to 1.1-3.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-3.
2023-10-09 22:44:48 +02:00
be130ee39a
gnu: r-testthat: Update to 3.2.0.
...
* gnu/packages/statistics.scm (r-testthat): Update to 3.2.0.
2023-10-09 22:44:48 +02:00
02a90c3e05
gnu: r-rsvg: Update to 2.6.0.
...
* gnu/packages/cran.scm (r-rsvg): Update to 2.6.0.
2023-10-09 22:44:48 +02:00
09ad283852
gnu: r-plotroc: Update to 2.3.1.
...
* gnu/packages/cran.scm (r-plotroc): Update to 2.3.1.
2023-10-09 22:44:48 +02:00
973b4aa880
gnu: r-grimport2: Update to 0.3-0.
...
* gnu/packages/cran.scm (r-grimport2): Update to 0.3-0.
2023-10-09 22:44:47 +02:00
48aedf1ed8
gnu: r-word2vec: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-word2vec): Update to 0.4.0.
2023-10-09 22:44:47 +02:00
e63b8bfafc
gnu: r-glmmtmb: Update to 1.1.8.
...
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.8.
[propagated-inputs]: Add r-mgcv.
2023-10-09 22:44:47 +02:00
94b7ecb16b
gnu: r-fansi: Update to 1.0.5.
...
* gnu/packages/cran.scm (r-fansi): Update to 1.0.5.
2023-10-09 22:44:47 +02:00
7fdf6d9bef
gnu: r-heatmaply: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-heatmaply): Update to 1.5.0.
2023-10-09 22:44:47 +02:00
d7e7df92f8
gnu: r-fbasics: Update to 4031.95.
...
* gnu/packages/cran.scm (r-fbasics): Update to 4031.95.
2023-10-09 22:44:47 +02:00
5488c0ac06
gnu: r-ksamples: Update to 1.2-10.
...
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-10.
2023-10-09 22:44:47 +02:00
f0e048576f
gnu: r-htmltools: Update to 0.5.6.1.
...
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.6.1.
2023-10-09 22:44:47 +02:00
591ffaede3
gnu: r-abn: Update to 3.0.1.
...
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.1.
2023-10-09 22:44:47 +02:00
7937c8827b
gnu: icu4c-73-promise: Fix broken test.
...
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/gnuzilla.scm (icu4c-73-promise)[source]: Add patch.
* gnu/packages/patches/icu4c-fix-TestHebrewCalendarInTemporalLeapYear.patch:
New file.
2023-10-09 18:11:07 +02:00
87ffb3d3fb
gnu: isync: Patch path to openssl binary.
...
* gnu/packages/mail.scm (isync)[arguments]: Add a phase to patch the
path to the openssl binary for mbsync-get-cert.
2023-10-09 15:30:49 +03:00
00feb9865a
gnu: povray: Update to 3.7.0.10.
...
* gnu/packages/graphics.scm (povray): Update to 3.7.0.10.
[source]: Simplify snippet.
2023-10-09 11:40:26 +02:00
6e99158abb
gnu: povray: Drop input labels.
...
* gnu/packages/graphics.scm (povray)[inputs]: Remove all input labels.
[arguments]: Use G-expression to avoid the use of %build-inputs.
2023-10-09 11:40:26 +02:00
321979a153
gnu: imgui@1.86: Adjust make-flags.
...
* gnu/packages/toolkits.scm (imgui-1.86)[arguments]: Remove the
"-DIMGUI_ENABLE_FREETYPE" make-flag which breaks the display of mangohud, the
only dependent. The "-DImDrawIdx=unsigned int" make-flag was previously
removed, so we can do both by filtering make-flags starting with "-D".
[inputs]: Remove freetype.
2023-10-09 00:05:57 -04:00
40a1254b05
gnu: mympd: Update to 12.0.4.
...
* gnu/packages/mpd.scm (mympd): Update to 12.0.4.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
0be2108d40
gnu: Add font-orbitron.
...
* gnu/packages/fonts.scm (font-orbitron): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
0be51fe03b
gnu: Add tree-sitter-scala.
...
* gnu/packages/tree-sitter.scm (tree-sitter-scala): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
a44569899a
gnu: Add tree-sitter-lua.
...
* gnu/packages/tree-sitter.scm (tree-sitter-lua): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
f59c31deaf
gnu: Add smithforth.
...
* gnu/packages/forth (smithforth): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
e1dcf86a35
gnu: Add python-beziers.
...
* gnu/packages/fontutils.scm (python-beziers): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
e9c0bb0341
gnu: python-distributed: Disable failing tests.
...
* gnu/packages/python-science.scm (python-distributed): Disable failing tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
002c5bec07
accounts: Ensure ‘last-change’ field of shadow entries is never zero.
...
* gnu/build/accounts.scm (passwd->shadow): Add ‘max’ call so NOW is
greater than or equal to 1.
2023-10-08 23:43:49 +02:00
9b77bd0b9b
gnu: vim: Update to 9.0.2001.
...
* gnu/packages/vim.scm (vim): Update to 9.0.2001.
[arguments]: Skip another test.
2023-10-08 10:19:08 +03:00
577fd21122
gnu: mpd-mpc: Install bash completions in correct location.
...
* gnu/packages/mpd.scm (mpd-mpc)[#:phases]: Add ‘move-completion’.
2023-10-08 08:48:15 +02:00
2e0ed79118
gnu: emacs-next-minimal: Apply Guix patches.
...
* gnu/packages/patches/emacs-next-native-comp-driver-options.patch: Add file.
* gnu/packages/patches/emacs-next-exec-path.patch: Add file.
* gnu/local.mk (dist_patch_DATA): Register them here.
* gnu/packages/emacs.scm (emacs-next-minimal)[origin](patches): Include the
same patches as emacs-minimal, save for the variants specific to emacs-next
introduced above.
Co-Authored-By: Nicolas Graves <ngraves@ngraves.fr>
Fixes: ‘emacs-next’ is almost unusable <https://bugs.gnu.org/66227 >
2023-10-08 08:40:57 +02:00
6e63530954
gnu: python-glymur: Update to 0.12.8.
...
* gnu/packages/python-xyz.scm (python-glymur): Update to 0.12.8.
[native-inputs]: Add python-scikit-image.
2023-10-07 23:31:35 -05:00
00a28bc435
services: configuration: Add some commonly used predicates.
...
* gnu/services/configuration.scm (list-of-packages?, list-of-symbols?): New
predicate.
* gnu/services/audio.scm (list-of-symbol?): Remove.
* gnu/services/telephony.scm (string-list?): Remove.
(serialize-string-list): Rename to …
(serialize-list-of-strings): … this.
(account-fingerprint-list?, jami-account-list?): Use list-of.
* doc/guix.texi: Update it.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-10-07 12:41:06 -04:00
dd65564db0
services: fstrim-service-type: Serialize with SRFI-171 transducers.
...
* gnu/services/linux.scm (serialize-fstrim-configuration): Refactor to use
base-transducer.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-10-07 12:41:05 -04:00
a7994ed58d
services: configuration: Use transducers within serialize-configuration.
...
Introduces 'base-transducer', a SRFI-171 based transducer that can be used as a
starting point for writing custom configuration record serializing procedures.
This also fixes the symbol maybe-value serialization test case.
* gnu/services/configuration.scm (empty-serializer?): New predicate.
(base-transducer, tfilter-maybe-value): New procedure.
(serialize-configuration): Adapt to use base-transducer.
* gnu/services/telephony.scm (jami-account->alist): Use transducers to skip
fields that are unserializable or whose field maybe-value is unset.
* tests/services/configuration.scm: Remove test-expect-fail.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-10-07 12:41:05 -04:00
1b29e5db8f
services: configuration: Simplify normalize-extra-args.
...
* gnu/services/configuration.scm
(define-configuration-helper, normalize-extra-args): Use #f instead of %unset-value.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-10-07 12:41:04 -04:00
e328a5f746
gnu: Add gnome-shell-extension-night-theme-switcher.
...
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-night-theme-switcher): New variable.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-10-07 11:29:47 -04:00
b566e1a98a
gnu: gqrx: Update to 2.17.
...
* gnu/packages/radio.scm (gqrx): Update to 2.17.
2023-10-07 11:51:43 +02:00
84431a30ea
gnu: python-openai: Update to 0.28.1.
...
* gnu/packages/python-web.scm (python-openai): Update to 0.28.1.
2023-10-07 00:04:07 -05:00
6d5a75c70e
gnu: librepcb: Update to 1.0.0.
...
* gnu/packages/engineering.scm (librepcb): Update to 1.0.0.
[source]: Add snippet to remove some vendored dependencies.
[build-system]: Use cmake-build-system.
[inputs]: Add fontconfig, fontobene-qt5, glu, hoedown, muparser,
opencascade-occt, clipper, qtdeclarative-5, qtquickcontrols2-5, quazip.
[native-inputs]: Add googletest, pkg-config.
[arguments]<#:configure-flags>: Add "-DUNBUNDLE_FONTOBENE_QT5=ON",
"-DUNBUNDLE_GTEST=ON", "-DUNBUNDLE_HOEDOWN=ON", "-DUNBUNDLE_MUPARSER=ON",
"-DUNBUNDLE_POLYCLIPPING=ON", "-DUNBUNDLE_QUAZIP=ON".
<#:phases>: Don't override the configure phase. Override the check phase and
skip failing tests.
[license]: Remove licenses from unbundled dependencies.
Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-10-06 21:39:44 -03:00
ced91adcc0
gnu: Add fontobene-qt5.
...
* gnu/packages/fontutils.scm (fontobene-qt5): New variable.
Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-10-06 21:34:22 -03:00
add2a22ad7
gnu: exim: Update to 4.96.1 [security updates].
...
Fixes CVE-2023-42114, CVE-2023-42115, CVE-2023-42116, CVE-2023-42117,
CVE-2023-42118, and CVE-2023-42119. See
<https://www.exim.org/static/doc/security/CVE-2023-zdi.txt > for more details.
* gnu/packages/mail.scm (exim): Update to 4.96.1.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-10-06 17:04:50 -04:00
ad10bbe563
gnu: python-pudb: Update to 2023.1.
...
* gnu/packages/python-xyz.scm (python-pudb): Update to 2023.1.
2023-10-06 14:46:26 -05:00
88ff6feca1
gnu: Add r-webchem.
...
* gnu/packages/cran.scm (r-webchem): New variable.
2023-10-06 16:37:16 +02:00
9d4339afb1
build-system/minify: Use esbuild.
...
* guix/build-system/minify.scm (default-uglify-js): Replace this procedure...
(default-esbuild): ...with this new procedure.
(lower): Use it, and add "esbuild" to build inputs.
* guix/build/minify-build-system.scm (minify): Invoke esbuild instead of
setting up a pipe to uglifyjs.
* gnu/packages/cran.scm (r-shiny)[native-inputs]: Replace node-uglify-js with
esbuild.
* gnu/packages/statistics.scm (r-dt)[native-inputs]: Same.
2023-10-06 16:37:16 +02:00
b19dfb9d3a
gnu: Add linasm.
...
* gnu/packages/maths.scm (linasm): New variable.
2023-10-06 16:37:16 +02:00
a7e6b4c98b
gnu: openjdk-12: Fix building on aarch64-linux.
...
* gnu/packages/java.scm (openjdk-12)[arugments]: When building for
aarch64-linux add a phase to remove a duplicate line.
2023-10-06 16:21:44 +03:00
8d27ef1ed3
gnu: r-dt: Update to 0.30.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.30.
2023-10-06 13:01:48 +02:00
326775b345
gnu: r-hunspell: Update to 3.0.3.
...
* gnu/packages/cran.scm (r-hunspell): Update to 3.0.3.
2023-10-06 13:01:48 +02:00
33f4951444
gnu: r-aplot: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-aplot): Update to 0.2.2.
2023-10-06 13:01:48 +02:00
a7b7b9bad3
gnu: r-chk: Update to 0.9.1.
...
* gnu/packages/cran.scm (r-chk): Update to 0.9.1.
2023-10-06 13:01:48 +02:00
900f67dea6
gnu: r-sungeo: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-sungeo): Update to 1.1.1.
[propagated-inputs]: Remove r-fasterize; add r-stringr and r-terra.
2023-10-06 13:01:48 +02:00
1b5067c0d0
gnu: Add suitesparse-umfpack.
...
* gnu/packages/maths.scm (suitesparse-umfpack): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:47 +02:00
383d54282e
gnu: Add suitesparse-spqr.
...
* gnu/packages/maths.scm (suitesparse-spqr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:47 +02:00
b278336180
gnu: Add suitesparse-spex.
...
* gnu/packages/maths.scm (suitesparse-spex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:47 +02:00
7302412676
gnu: Add suitesparse-mongoose.
...
* gnu/packages/maths.scm (suitesparse-mongoose): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:46 +02:00
9dde72a23c
gnu: Add suitesparse-rbio.
...
* gnu/packages/maths.scm (suitesparse-rbio): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:46 +02:00
e890349067
gnu: Add suitesparse-ldl.
...
* gnu/packages/maths.scm (suitesparse-ldl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:46 +02:00
4b512f5491
gnu: Add suitesparse-klu.
...
* gnu/packages/maths.scm (suitesparse-klu): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:46 +02:00
ec2c7d2d48
gnu: Add suitesparse-cxsparse.
...
* gnu/packages/maths.scm (suitesparse-cxsparse): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:46 +02:00
75faca26c2
gnu: Add suitesparse-cholmod.
...
* gnu/packages/maths.scm (suitesparse-cholmod): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:46 +02:00
7c5d3592e7
gnu: Add metis-suitesparse.
...
* gnu/packages/maths.scm (metis-suitesparse): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:46 +02:00
95ecbdc9b1
gnu: Add gklib-suitesparse.
...
* gnu/packages/maths.scm (gklib-suitesparse): New variable.
* gnu/packages/patches/gklib-suitesparse.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
9b5dbc46e6
gnu: Add metis-5.2.
...
* gnu/packages/maths.scm (metis-5.2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
998a79355c
gnu: Add gklib.
...
* gnu/packages/maths.scm (gklib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
a764c7c0b9
gnu: Add suitesparse-ccolamd.
...
* gnu/packages/maths.scm (suitesparse-ccolamd): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
3fc3b35738
gnu: Add suitesparse-colamd.
...
* gnu/packages/maths.scm (suitesparse-colamd): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
97edef50f4
gnu: Add suitesparse-camd.
...
* gnu/packages/maths.scm (suitesparse-camd): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
913e2dd61f
gnu: Add suitesparse-btf.
...
* gnu/packages/maths.scm (suitesparse-btf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
2eb40f8b39
gnu: Add suitesparse-amd.
...
* gnu/packages/maths.scm (suitesparse-amd): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:45 +02:00
a6fc1164c4
gnu: Add suitesparse-config.
...
The suitesparse-source variable contains the entire SuiteSparse source code,
which is used for all subpackages.
* gnu/packages/maths.scm (suitesparse-version, suitesparse-source,
suitesparse-config): New variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:44 +02:00
4a368c3a8b
gnu: suitesparse: Tweak description.
...
* gnu/packages/maths.scm (suitesparse)[description]: Mention that all
subpackages are included.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06 12:26:44 +02:00
16fd9d6e3d
gnu: guix: Update to e863274.
...
This includes the ‘guix perform-download’ fix from commit
762fdbdef5e863274
2023-10-06 12:26:44 +02:00
110378934e
gnu: Add vendor-reset-linux-module.
...
* gnu/packages/linux.scm (vendor-reset-linux-module): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06 11:52:14 +02:00
9d0da4ced3
gnu: matterbridge: Update to 1.26.0
...
* gnu/packages/messaging.scm (matterbridge): Update to 1.26.0
Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06 11:52:13 +02:00
9930aeb0e3
gnu: Add python-mapie.
...
* gnu/packages/statistics.scm (python-mapie): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06 11:52:13 +02:00
70c27db33e
system: Modify bash skeleton to colorize 'ip' output.
...
* gnu/system/shadow.scm (%default-bashrc): Add an alias for 'ip' that enables
output colorization.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06 11:52:13 +02:00
e97e708958
gnu: r-biomvrcns: Patch R constants.
...
* gnu/packages/bioconductor.scm (r-biomvrcns)[arguments]: Add phase
'patch-constants.
2023-10-06 08:55:11 +02:00
e863274e67
services: hurd-vm: Leave root password uninitialized when offloading.
...
Starting with 953c65ffdd
2023-10-05 23:14:55 +02:00
917c17c052
tests: childhurd: Test SSH connection with a non-root user.
...
* gnu/tests/virtualization.scm (%childhurd-os): Remove ‘services’ and
add ‘users’ to the GNU/Hurd ‘operating-system’ declaration.
(run-childhurd-test)[run-command-over-ssh]: Log in as “test” instead of
“root”.
2023-10-05 23:14:55 +02:00
a0818d0236
services: mcron: Hide ‘mkdir-p’ from (shepherd support).
...
This a avoids a Guile warning about the name collision with (guix build
utils). The warning was introduced by commit
e0e85f2b23
2023-10-05 23:14:55 +02:00
c49cc1ac12
gnu: guile-ini: Added missing propagated input ‘guile-lib’.
...
Fixes <https://issues.guix.gnu.org/66315 >.
* gnu/packages/guile-xyz.scm (guile-ini)[propagated-inputs]: Add
GUILE-LIB.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:55 +02:00
be214b56c0
gnu: prosody: Update to 0.12.4.
...
* gnu/packages/messaging.scm (prosody): Update to 0.12.4.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:55 +02:00
45fbcc452f
gnu: go-ipfs: Update to 0.14.0.
...
* gnu/packages/ipfs.scm (go-ipfs): Update to 0.14.0.
[source]: Change "go-ipfs" to "kubo" in the source link.
[arguments]: Rename "go-ipfs" to "kubo".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:55 +02:00
2467b7d1fb
system: bare-bones: Add comments about nss-cert and NTP service.
...
TLS errors may be confusing to some users. Two comments are added: one
comment should help clarify the extra step required for root CA certificates
to be installed, while the other will help users keep their clocks
synchronized, another source of TLS errors due to clock drift.
* gnu/system/examples/bare-bones.tmpl: Add nss-cert and NTP service comments.
Signed-off-by: Nikolaos Chatzikonstantinou <nchatz314@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:54 +02:00
97927608cb
Revert "system: accounts: Export <user-account>."
...
This reverts commit 03795e2ba2https://issues.guix.gnu.org/66279 >.
2023-10-05 23:14:54 +02:00
87b3ac13fe
gnu: Add apple-bash.
...
* gnu/packages/apple.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODELS): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:54 +02:00
efab2a25be
gnu: rust-trybuild: Update 1.0.19 version hash.
...
Fixes <https://issues.guix.gnu.org/66345 >.
* gnu/packages/crates-io.scm (rust-trybuild): Update 1.0.19 hash.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:53 +02:00
0374640618
gnu: Add cgit-pink.
...
* gnu/packages/version-control.scm (cgit-pink): New variable.
2023-10-05 17:38:33 +01:00
db52c06c3d
gnu: cgit: Fix cross compilation.
...
* gnu/packages/version-control.scm (cgit)[native-inputs]: Move bzip2, gzip and
xz to ...
[inputs]: ... here. Add bash-minimal.
[arguments]: Use cc-for-target.
2023-10-05 17:38:32 +01:00
faad060771
gnu: cgit: Update package style.
...
* gnu/packages/version-control.scm (cgit)[arguments]: Rewrite using
G-expressions. Do not return #t from custom phases.
2023-10-05 17:38:28 +01:00
29243a9f39
gnu: python-pynetbox: Update to 7.2.0.
...
* gnu/packages/python-web.scm (python-pynetbox): Update to 7.2.0.
2023-10-05 18:31:11 +02:00
21f3f30141
gnu: Add python-pynetbox.
...
* gnu/packages/python-web.scm (python-pynetbox): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05 17:23:48 +02:00
9917079bd7
gnu: Add WCSTools.
...
* gnu/packages/astronomy.scm (wcstools): New variable.
* gnu/packages/patches/wcstools-extend-makefiles.patch: New file.
* gnu/local.mk: Add it.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05 17:07:16 +02:00
d37e24827a
gnu: r-bayesfactor: Update to 0.9.12-4.5.
...
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.5.
2023-10-05 15:16:29 +02:00
bba0dc6e5d
gnu: r-puniform: Update to 0.2.7.
...
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.7.
[propagated-inputs]: Add r-numderiv.
2023-10-05 15:16:29 +02:00
a7b9a558d5
gnu: r-lubridate: Update to 1.9.3.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.3.
2023-10-05 15:16:29 +02:00
6015f41454
gnu: r-vgam: Update to 1.1-9.
...
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-9.
2023-10-05 15:16:29 +02:00
f3a73e9ce5
gnu: r-rmarkdown: Update to 2.25.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.25.
2023-10-05 15:16:29 +02:00
6535a7d047
gnu: r-withr: Update to 2.5.1.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.5.1.
2023-10-05 15:16:29 +02:00
3b9bb9c61e
gnu: r-openssl: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.1.
2023-10-05 15:16:29 +02:00
48dcf15dea
gnu: r-dbplyr: Update to 2.3.4.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.4.
2023-10-05 15:16:29 +02:00
d9993b98c6
gnu: r-markdown: Update to 1.9.
...
* gnu/packages/statistics.scm (r-markdown): Update to 1.9.
2023-10-05 15:16:29 +02:00
8f145cafec
gnu: r-evaluate: Update to 0.22.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.22.
2023-10-05 15:16:29 +02:00
a82e566cbc
gnu: r-plyr: Update to 1.8.9.
...
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.9.
2023-10-05 15:16:29 +02:00
07bf9f857f
gnu: r-matrix: Update to 1.6-1.1.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-1.1.
2023-10-05 15:16:29 +02:00
8b56e8fd32
gnu: r-lattice: Update to 0.21-9.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-9.
2023-10-05 15:16:29 +02:00
93f0029067
gnu: r-varhandle: Update to 2.0.6.
...
* gnu/packages/cran.scm (r-varhandle): Update to 2.0.6.
2023-10-05 15:16:29 +02:00
bbf8ac3229
gnu: r-mockery: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-mockery): Update to 0.4.4.
2023-10-05 15:16:29 +02:00
9e2434a2ac
gnu: r-paws: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws): Update to 0.4.0.
[propagated-inputs]: Add r-paws-common.
2023-10-05 15:16:29 +02:00
dee60226bb
gnu: r-paws-common: Update to 0.6.1.
...
* gnu/packages/cran.scm (r-paws-common): Update to 0.6.1.
2023-10-05 15:16:29 +02:00
5a62f0cb03
gnu: r-tensorflow: Update to 2.14.0.
...
* gnu/packages/cran.scm (r-tensorflow): Update to 2.14.0.
[propagated-inputs]: Add r-lifecycle.
2023-10-05 15:16:29 +02:00
9737b40053
gnu: r-exactextractr: Update to 0.10.0.
...
* gnu/packages/cran.scm (r-exactextractr): Update to 0.10.0.
2023-10-05 15:16:29 +02:00
bb034d5a57
gnu: r-protolite: Update to 2.3.0.
...
* gnu/packages/cran.scm (r-protolite): Update to 2.3.0.
2023-10-05 15:16:29 +02:00
ce99c51f8f
gnu: r-vroom: Update to 1.6.4.
...
* gnu/packages/cran.scm (r-vroom): Update to 1.6.4.
2023-10-05 15:16:29 +02:00
2c6fb7a21f
gnu: r-delaporte: Update to 8.3.0.
...
* gnu/packages/cran.scm (r-delaporte): Update to 8.3.0.
2023-10-05 15:16:29 +02:00
12774311dd
gnu: r-pdftools: Update to 3.4.0.
...
* gnu/packages/cran.scm (r-pdftools): Update to 3.4.0.
2023-10-05 15:16:29 +02:00
06fb5cf520
gnu: r-vdiffr: Update to 1.0.7.
...
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.7.
2023-10-05 15:16:29 +02:00
4d0861d307
gnu: r-mlr3misc: Update to 0.13.0.
...
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.13.0.
2023-10-05 15:16:29 +02:00
1d7dfe2f8d
gnu: r-seurat: Update to 4.4.0.
...
* gnu/packages/cran.scm (r-seurat): Update to 4.4.0.
[propagated-inputs]: Add r-purrr.
2023-10-05 15:16:29 +02:00
f7b4b14d49
gnu: r-seuratobject: Update to 4.1.4.
...
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.4.
2023-10-05 15:16:29 +02:00
9703a303f6
gnu: r-metafor: Update to 4.4-0.
...
* gnu/packages/cran.scm (r-metafor): Update to 4.4-0.
2023-10-05 15:16:28 +02:00
509ad5c498
gnu: r-brms: Update to 2.20.4.
...
* gnu/packages/cran.scm (r-brms): Update to 2.20.4.
2023-10-05 15:16:28 +02:00
2bcbcea451
gnu: r-projpred: Update to 2.7.0.
...
* gnu/packages/cran.scm (r-projpred): Update to 2.7.0.
[propagated-inputs]: Add r-gtools.
2023-10-05 15:16:28 +02:00
d1f4bc7ae1
gnu: r-rstanarm: Update to 2.26.1.
...
* gnu/packages/cran.scm (r-rstanarm): Update to 2.26.1.
[propagated-inputs]: Add r-posterior.
2023-10-05 15:16:28 +02:00
ee4d8fabbb
gnu: r-rsconnect: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-rsconnect): Update to 1.1.1.
2023-10-05 15:16:28 +02:00
b5fc66d0ec
gnu: r-erm: Update to 1.0-4.
...
* gnu/packages/cran.scm (r-erm): Update to 1.0-4.
2023-10-05 15:16:28 +02:00
250f6b92f7
gnu: r-kutils: Update to 1.73.
...
* gnu/packages/cran.scm (r-kutils): Update to 1.73.
2023-10-05 15:16:28 +02:00
5767e3f443
gnu: r-rsvg: Update to 2.5.0.
...
* gnu/packages/cran.scm (r-rsvg): Update to 2.5.0.
2023-10-05 15:16:28 +02:00
4aef0d05e1
gnu: r-caretensemble: Update to 2.0.3.
...
* gnu/packages/cran.scm (r-caretensemble): Update to 2.0.3.
2023-10-05 15:16:28 +02:00
09a189941a
gnu: r-seewave: Update to 2.2.2.
...
* gnu/packages/cran.scm (r-seewave): Update to 2.2.2.
2023-10-05 15:16:28 +02:00
b37735ec76
gnu: r-gamlss: Update to 5.4-20.
...
* gnu/packages/cran.scm (r-gamlss): Update to 5.4-20.
2023-10-05 15:16:28 +02:00
0f08f438c0
gnu: r-parameters: Update to 0.21.2.
...
* gnu/packages/cran.scm (r-parameters): Update to 0.21.2.
2023-10-05 15:16:28 +02:00
03cec4ae27
gnu: r-graphlayouts: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-graphlayouts): Update to 1.0.1.
2023-10-05 15:16:28 +02:00
0025676cbe
gnu: r-clue: Update to 0.3-65.
...
* gnu/packages/cran.scm (r-clue): Update to 0.3-65.
2023-10-05 15:16:28 +02:00
486d1f8613
gnu: r-sctransform: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-sctransform): Update to 0.4.0.
2023-10-05 15:16:28 +02:00
e20c61e8ab
gnu: r-arrow: Update to 13.0.0.1.
...
* gnu/packages/cran.scm (r-arrow): Update to 13.0.0.1.
2023-10-05 15:16:28 +02:00
0910fe7048
gnu: r-ggfun: Update to 0.1.3.
...
* gnu/packages/cran.scm (r-ggfun): Update to 0.1.3.
[propagated-inputs]: Add r-cli.
2023-10-05 15:16:28 +02:00
52a2028760
gnu: r-europepmc: Update to 0.4.3.
...
* gnu/packages/cran.scm (r-europepmc): Update to 0.4.3.
2023-10-05 15:16:28 +02:00
60df6d63d7
gnu: r-polyclip: Update to 1.10-6.
...
* gnu/packages/cran.scm (r-polyclip): Update to 1.10-6.
2023-10-05 15:16:28 +02:00
103260da87
gnu: r-yulab-utils: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.0.
[propagated-inputs]: Add r-cli, r-digest, and r-fs.
2023-10-05 15:16:28 +02:00
1a2fac04b4
gnu: r-osqp: Update to 0.6.3.1.
...
* gnu/packages/cran.scm (r-osqp): Update to 0.6.3.1.
2023-10-05 15:16:28 +02:00
3a7e7842de
gnu: r-units: Update to 0.8-4.
...
* gnu/packages/cran.scm (r-units): Update to 0.8-4.
2023-10-05 15:16:28 +02:00
f66abe6a17
gnu: r-apcluster: Update to 1.4.11.
...
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.11.
2023-10-05 15:16:28 +02:00
0e29b39b49
gnu: r-bayesm: Update to 3.1-6.
...
* gnu/packages/cran.scm (r-bayesm): Update to 3.1-6.
2023-10-05 15:16:28 +02:00
3f9381c2e5
gnu: r-iso: Update to 0.0-21.
...
* gnu/packages/cran.scm (r-iso): Update to 0.0-21.
2023-10-05 15:16:28 +02:00
9494ac4edd
gnu: r-gridpattern: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-gridpattern): Update to 1.1.0.
2023-10-05 15:16:28 +02:00
cc7ba0ef28
gnu: r-qmri: Update to 1.2.7.
...
* gnu/packages/cran.scm (r-qmri): Update to 1.2.7.
2023-10-05 15:16:28 +02:00
6eca8ff183
gnu: r-waffle: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-waffle): Update to 1.0.2.
[propagated-inputs]: Add r-curl, r-dt, r-htmlwidgets, r-plyr, r-rlang, and r-stringr.
2023-10-05 15:16:28 +02:00
8372038fc4
gnu: r-sodium: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-sodium): Update to 1.3.0.
2023-10-05 15:16:28 +02:00
03de1715ea
gnu: r-activity: Update to 1.3.4.
...
* gnu/packages/cran.scm (r-activity): Update to 1.3.4.
2023-10-05 15:16:28 +02:00
ab2d831a0e
gnu: r-rcpphnsw: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.5.0.
2023-10-05 15:16:27 +02:00
f8d59b3c58
gnu: r-rcppalgos: Update to 2.8.2.
...
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.8.2.
2023-10-05 15:16:27 +02:00
09c2b23bf9
gnu: r-gert: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-gert): Update to 2.0.0.
2023-10-05 15:16:27 +02:00
7eb383815f
gnu: r-effectsize: Update to 0.8.6.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.8.6.
2023-10-05 15:16:27 +02:00
6049a5ce62
gnu: r-coin: Update to 1.4-3.
...
* gnu/packages/cran.scm (r-coin): Update to 1.4-3.
2023-10-05 15:16:27 +02:00
ee76d53dd8
gnu: r-libcoin: Update to 1.0-10.
...
* gnu/packages/cran.scm (r-libcoin): Update to 1.0-10.
2023-10-05 15:16:27 +02:00
f87c1c1016
gnu: r-tarchetypes: Update to 0.7.9.
...
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.9.
[propagated-inputs]: Remove r-furrr, r-future, and r-future-callr.
2023-10-05 15:16:27 +02:00
7141b41835
gnu: r-magick: Update to 2.8.0.
...
* gnu/packages/cran.scm (r-magick): Update to 2.8.0.
2023-10-05 15:16:27 +02:00
6e74d7c1ee
gnu: r-abctools: Update to 1.1.7.
...
* gnu/packages/cran.scm (r-abctools): Update to 1.1.7.
2023-10-05 15:16:27 +02:00
f9e8fdcbfe
gnu: r-rootsolve: Update to 1.8.2.4.
...
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.4.
2023-10-05 15:16:27 +02:00
d3751cac6d
gnu: r-doby: Update to 4.6.19.
...
* gnu/packages/cran.scm (r-doby): Update to 4.6.19.
2023-10-05 15:16:27 +02:00
d1884a7225
gnu: r-getopt: Update to 1.20.4.
...
* gnu/packages/cran.scm (r-getopt): Update to 1.20.4.
2023-10-05 15:16:27 +02:00
f7d86f00e1
gnu: r-nodbi: Update to 0.9.8.
...
* gnu/packages/cran.scm (r-nodbi): Update to 0.9.8.
2023-10-05 15:16:27 +02:00
40f51a15eb
gnu: r-insight: Update to 0.19.5.
...
* gnu/packages/cran.scm (r-insight): Update to 0.19.5.
2023-10-05 15:16:27 +02:00
5dac9674d4
gnu: r-pupillometryr: Update to 0.0.5.
...
* gnu/packages/cran.scm (r-pupillometryr): Update to 0.0.5.
[propagated-inputs]: Remove r-data-table and r-lazyeval; add r-stringr.
2023-10-05 15:16:27 +02:00
de4c0a2564
gnu: r-billboarder: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-billboarder): Update to 0.4.1.
2023-10-05 15:16:27 +02:00
b372a2c8c2
gnu: r-learnr: Update to 0.11.5.
...
* gnu/packages/cran.scm (r-learnr): Update to 0.11.5.
[native-inputs]: Add esbuild.
2023-10-05 15:16:27 +02:00
7694563fa1
gnu: r-renv: Update to 1.0.3.
...
* gnu/packages/cran.scm (r-renv): Update to 1.0.3.
2023-10-05 15:16:27 +02:00
15688b1c96
gnu: r-rio: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-rio): Update to 1.0.1.
[propagated-inputs]: Remove r-openxlsx; add r-lifecycle, r-r-utils, r-stringi, and
r-writexl.
2023-10-05 15:16:27 +02:00
66e46a0260
gnu: r-import: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-import): Update to 1.3.1.
2023-10-05 15:16:27 +02:00
42f5162f60
gnu: r-tinytex: Update to 0.47.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.47.
2023-10-05 15:16:27 +02:00
df888839a1
gnu: r-psych: Update to 2.3.9.
...
* gnu/packages/cran.scm (r-psych): Update to 2.3.9.
2023-10-05 15:16:27 +02:00
7f51c3790f
gnu: r-rmysql: Update to 0.10.26.
...
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.26.
2023-10-05 15:16:27 +02:00
994a8523be
gnu: r-limsolve: Update to 1.5.7.
...
* gnu/packages/cran.scm (r-limsolve): Update to 1.5.7.
2023-10-05 15:16:27 +02:00
e234cecc9e
gnu: r-lamw: Update to 2.2.1.
...
* gnu/packages/cran.scm (r-lamw): Update to 2.2.1.
2023-10-05 15:16:27 +02:00
50f7b875a9
gnu: r-sp: Update to 2.1-0.
...
* gnu/packages/cran.scm (r-sp): Update to 2.1-0.
2023-10-05 15:16:27 +02:00
9aa7e46c86
gnu: r-prettyunits: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-prettyunits): Update to 1.2.0.
2023-10-05 15:16:27 +02:00
47b8f2165a
gnu: r-ctrdata: Update to 1.15.2.
...
* gnu/packages/cran.scm (r-ctrdata): Update to 1.15.2.
2023-10-05 15:16:27 +02:00
5b0a691bfa
gnu: r-pkgload: Update to 1.3.3.
...
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.3.
[propagated-inputs]: Add r-pkgbuild.
2023-10-05 15:16:27 +02:00
1fc6c1d2ab
gnu: r-gensa: Update to 1.1.10.1.
...
* gnu/packages/cran.scm (r-gensa): Update to 1.1.10.1.
2023-10-05 15:16:26 +02:00
5cac6f401c
gnu: r-d3r: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-d3r): Update to 1.1.0.
[propagated-inputs]: Remove r-rlang.
2023-10-05 15:16:26 +02:00
cb8c68da4b
gnu: r-jqr: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-jqr): Update to 1.3.0.
2023-10-05 15:16:26 +02:00
92fce36949
gnu: r-curl: Update to 5.1.0.
...
* gnu/packages/cran.scm (r-curl): Update to 5.1.0.
2023-10-05 15:16:26 +02:00
4d9908cd61
gnu: r-jade: Update to 2.0-4.
...
* gnu/packages/cran.scm (r-jade): Update to 2.0-4.
2023-10-05 15:16:26 +02:00
6d2df3bd9e
gnu: r-gunifrac: Update to 1.8.
...
* gnu/packages/cran.scm (r-gunifrac): Update to 1.8.
[propagated-inputs]: Add r-inline.
2023-10-05 15:16:26 +02:00
fa97d8c2d0
gnu: r-ggstatsplot: Update to 0.12.1.
...
* gnu/packages/cran.scm (r-ggstatsplot): Update to 0.12.1.
2023-10-05 15:16:26 +02:00
b253dbe7a0
gnu: r-datawizard: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-datawizard): Update to 0.9.0.
2023-10-05 15:16:26 +02:00
c64777cfe0
gnu: r-activepathways: Update to 2.0.2.
...
* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.2.
2023-10-05 15:16:26 +02:00
f1259b80be
gnu: r-valr: Update to 0.7.0.
...
* gnu/packages/bioconductor.scm (r-valr): Update to 0.7.0.
[propagated-inputs]: Add r-lifecycle.
2023-10-05 15:16:26 +02:00
8c22cc96f0
gnu: r-biomartr: Update to 1.0.5.
...
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.5.
2023-10-05 15:16:26 +02:00
eeb7132ec3
gnu: emacs-telega: Update to 0.8.03-1.17bfa50.
...
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to
0.8.03-1.17bfa50.
2023-10-05 14:16:39 +04:00
9e963c9d75
gnu: tdlib: Update to 1.8.16-0.4d1d22d.
...
* gnu/packages/messaging.scm (tdlib): Update to 1.8.16-0.4d1d22d.
2023-10-05 14:16:38 +04:00
276b9287c1
gnu: r-aplot: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-aplot): Update to 0.2.1.
2023-10-05 10:31:09 +02:00
d841c23dc5
gnu: r-tximeta: Update to 1.18.3.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.3.
2023-10-05 10:23:27 +02:00
b53f7a87b2
gnu: r-biodb: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.1.
[propagated-inputs]: Add r-git2r.
2023-10-05 10:23:27 +02:00
bf7c049147
gnu: r-gviz: Update to 1.44.2.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.2.
2023-10-05 10:23:27 +02:00
9220702479
gnu: r-s4vectors: Update to 0.38.2.
...
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.2.
2023-10-05 10:23:27 +02:00
6492c6496b
gnu: r-biocstyle: Update to 2.28.1.
...
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.1.
2023-10-05 10:23:27 +02:00
27fd2d2c2a
gnu: r-yapsa: Update to 1.26.8.
...
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.26.8.
2023-10-05 10:23:27 +02:00
6a1b46e7ab
gnu: r-enrichplot: Update to 1.20.3.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.3.
[propagated-inputs]: Add r-ggfun.
2023-10-05 10:23:27 +02:00
3f3c986001
gnu: r-spectra: Update to 1.10.3.
...
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.10.3.
2023-10-05 10:23:27 +02:00
b82dc9b724
gnu: r-keggrest: Update to 1.40.1.
...
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.1.
2023-10-05 10:23:27 +02:00
b56dabc7a3
gnu: r-genomeinfodb: Update to 1.36.4.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.4.
2023-10-05 10:23:27 +02:00
28b2b7c367
gnu: r-ensembldb: Update to 2.24.1.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.1.
2023-10-05 10:23:27 +02:00
fefad76048
gnu: r-ancombc: Update to 2.2.2.
...
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.2.
2023-10-05 10:23:27 +02:00
caf9f847ef
gnu: r-omnipathr: Update to 3.8.2.
...
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.2.
2023-10-05 10:23:27 +02:00
759b55712e
gnu: curl: Update to 8.3.0.
...
According to upstream, the current version has 19 security issues.
See also <https://curl.se/docs/vuln-7.85.0.html >.
* gnu/packages/curl.scm (curl/fixed): New variable.
(curl): Use it as replacement.
2023-10-05 09:41:31 +02:00
a31725ff90
gnu: openjdk-10: Fix building on aarch64-linux.
...
* gnu/packages/java.scm (openjdk-10)[arguments]: Replace inherited
'patch-for-aarch64 phase for changes in source code layout.
Co-authored-by: Christopher Baines <mail@cbaines.net>
Co-authored-by: Tim Johann <t1m@phrogstar.de>
2023-10-05 09:54:04 +03:00
6f8f98f334
gnu: universal-ctags: Update to 6.0.20231001.0.
...
* gnu/packages/code.scm (universal-ctags): Update to 6.0.20231001.0.
2023-10-05 09:54:04 +03:00
c3f47bb2ee
gnu: tree-sitter-java: Update to 0.20.1.
...
* gnu/packages/tree-sitter.scm (tree-sitter-java): Update to 0.20.1.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-10-05 09:54:23 +04:00
ecb1b335d4
gnu: emacs-elpy: Update to 1.35.0-2.7ff8ffa.
...
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.35.0-2.7ff8ffa.
[origin]: Apply patch.
[arguments]: Disable a new test in the disable-broken-tests phase.
* gnu/packages/patches/emacs-elpy-dup-test-name.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-10-05 01:34:21 -04:00
22d2f94eb2
gnu: phoronix-test-suite: Do not propagate gcc-toolchain.
...
* gnu/packages/benchmark.scm (gcc-toolchain*): Replace gcc-toolchain-12
reference with gcc-toolchain.
* gnu/packages/benchmark.scm (phoronix-test-suite): Augment wrap-binary phase
with GCC variables.
[propagated-inputs]: Delete field, moving gcc-toolchain to...
[inputs]: ... here.
[search-paths]: New field.
2023-10-04 23:30:42 -04:00
20df2ee697
gnu: libxpm: Graft with 3.5.17 [security fixes].
...
Fixes CVE-2023-43788 and CVE-2023-43789. See the X.Org security advisory
<https://lists.x.org/archives/xorg/2023-October/061506.html > for more
information.
* gnu/packages/xorg.scm (libxpm)[replacement]: New field, set to ...
(libxpm/fixed): ... this new variable.
2023-10-04 18:46:22 -04:00
b317eb8a9e
gnu: libx11: Update replacement to 1.8.7 [security fixes].
...
Fixes CVE-2023-43785, CVE-2023-43786, and CVE-2023-43787. See the X.Org
security advisory <https://lists.x.org/archives/xorg/2023-October/061506.html >
for more information.
* gnu/packages/xorg.scm (libx11-fixed): Update to 1.8.7.
2023-10-04 17:57:13 -04:00
de8fc548c6
gnu: emacs-debbugs: Preserve subject when replying to patch threads.
...
* gnu/packages/patches/emacs-debbugs-keep-patch-subject.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs-xyz.scm (emacs-debbugs) [origin]: Use it.
2023-10-04 16:32:45 -04:00
e718647930
gnu: Remove suitesparse-3.
...
* gnu/packages/maths.scm (suitesparse-3): Delete variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-04 17:59:03 +03:00
151687a7a2
gnu: scilab: Update to 2023.1.0.
...
* gnu/packages/maths.scm (scilab): Update to 2023.1.0.
[source] Use git-fetch.
<modules>: Add (guix build utils) and (ice-9 ftw).
<patches>: Add patch for hdf5 >= 1.10.
<snippet>: Move contents of the "scilab" directory to its parents. Remove
the other files and autogenerated files.
[native-inputs]: Add autoconf, autoconf-archive, automake, bison, eigen, flex,
libtool, ocaml and ocaml-findlib.
[inputs]: Add ocaml-num, replace hdf5-1.8 by hdf5-1.14 and suitesparse-3 by
suitesparse.
[arguments]: Remove quasiquote. Add --enable-build-parser,
--with-eigen-include=..., OCAMLC=... and OCAMLOPT=... to #:configure-flags.
<#:phases>: Add fix-ocaml-num, remove-desktop-files,
bootstrap-dynamic_link-scripts and build-parsers phases. Remove fixes for
compilation and linker errors from the pre-build phase.
[home-page]: Update URL.
[description]: Add two spaces between sentences.
[license]: Update to gpl2 and bsd-3.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-04 17:58:22 +03:00
37d0befca0
gnu: parallel: Update to 20230922.
...
* gnu/packages/parallel.scm (parallel): Update to 20230922.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-04 17:25:46 +03:00
264baefa88
gnu: freerdp: Update to 2.11.2.
...
* gnu/packages/rdesktop.scm (freerdp): Update to 2.11.2.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-04 15:09:26 +02:00
c1af4060e9
gnu: guile-mastodon: Update to 0.0.1-0a94ae6b
...
Message-ID: <0064c4ff9262c4906131909ae1276667033f8811.1696343806.git.ekaitz@elenq.tech>
From: Ekaitz Zarraga <ekaitz@elenq.tech>
Date: Tue, 3 Oct 2023 16:28:58 +0200
Subject: [PATCH] gnu: guile-mastodon: Update to 0.0.1-0a94ae6b
* gnu/packages/guile-xyz.scm (guile-mastodon): Update to 0.0.1-0a94ae6b
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-04 15:05:24 +02:00
06e53c577e
gnu: kicad: Update to 7.0.8.
...
* gnu/packages/engineering.scm (kicad): Update to 7.0.8.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-04 15:03:00 +02:00
4a99dd7322
gnu: ultrastar-deluxe: Update to 2023.9.0.
...
* gnu/packages/games.scm (ultrastar-deluxe): Update to 2023.9.0.
[source]: Use tagged version again.
Tested-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2023-10-04 13:45:55 +02:00
5f2704517c
gnu: r-dofuture: Add r-markdown.
...
* gnu/packages/cran.scm (r-dofuture)[native-inputs]: Add r-markdown.
2023-10-04 11:21:52 +02:00
273ee56bc2
gnu: Add r-arrayquality.
...
* gnu/packages/bioconductor.scm (r-arrayquality): New variable.
2023-10-04 11:03:23 +02:00
4edacf416b
gnu: Add r-arraymvout.
...
* gnu/packages/bioconductor.scm (r-arraymvout): New variable.
2023-10-04 11:03:23 +02:00
4221c3d4da
gnu: Add r-parody.
...
* gnu/packages/bioconductor.scm (r-parody): New variable.
2023-10-04 11:03:23 +02:00
b84f6c2c0e
gnu: Add r-mdqc.
...
* gnu/packages/bioconductor.scm (r-mdqc): New variable.
2023-10-04 11:03:23 +02:00
9f08080b38
gnu: Add r-apcomplex.
...
* gnu/packages/bioconductor.scm (r-apcomplex): New variable.
2023-10-04 11:03:23 +02:00
e65ba1ccee
gnu: Add r-org-sc-sgd-db.
...
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): New variable.
2023-10-04 11:03:23 +02:00
1025316d80
gnu: Add r-hybridmtest.
...
* gnu/packages/bioconductor.scm (r-hybridmtest): New variable.
2023-10-04 11:03:23 +02:00
f989150083
gnu: Add r-repmis.
...
* gnu/packages/cran.scm (r-repmis): New variable.
2023-10-04 11:03:23 +02:00
58a3333f58
gnu: Add r-anota2seq.
...
* gnu/packages/bioconductor.scm (r-anota2seq): New variable.
2023-10-04 11:03:23 +02:00
d0aaa5aacf
gnu: emacs-yeetube: Update to 2.0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-yeetube): Update to 2.0.5.
[arguments]<#:phases>: Update variable names holding executable locations.
2023-10-04 10:58:33 +02:00
d3021c4538
gnu: emacs-yaml-mode: Update to 0.0.16.
...
* gnu/packages/emacs-xyz.scm (emacs-yaml-mode): Update to 0.0.16.
2023-10-04 10:58:33 +02:00
b346b93d41
gnu: emacs-org-dynamic-agenda: Update to 0.3.1.
...
* gnu/packages/emacs-xyz.scm (emacs-org-dynamic-agenda): Update to 0.3.1.
2023-10-04 10:58:33 +02:00
Maxim Cournoyer
Ricardo Wurmus
Clément Lassieur
Efraim Flashner
John Kehayias
Bruno Victal
Luis Felipe
Karl Hallsby
john muhl
B. Wilson
Rikard Nordgren
Nicolas Graves
Ludovic Courtès
Liliana Marie Prikler
jgart
Sergio Pastor Pérez
Guillaume Le Vaillant
pinoaffe
Wilko Meyer
David Elsing
Lars Rustand
Denis 'GNUtoo' Carikli
Vinicius Monego
Fabio Natali
André Batista
Artyom V. Poptsov
Nikolaos Chatzikonstantinou
Distopico
Arun Isaac
Mathieu Othacehe
Timotej Lazar
Sharlatan Hellseher
Andrew Tropin
Kjartan Oli Agustsson
Andy Tai
Ekaitz Zarraga
Peter Polidoro
Jonathan Brielmaier
Mădălin Ionel Patrașcu
Nicolas Goaziou