Mădălin Ionel Patrașcu
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a5f4c03df1
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gnu: Add r-scmap.
* gnu/packages/bioconductor.scm (r-scmap): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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2022-05-29 00:43:05 +02:00 |
Ricardo Wurmus
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66bfe55848
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gnu: Add r-msdata.
* gnu/packages/bioconductor.scm (r-msdata): New variable.
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2022-05-28 23:19:48 +02:00 |
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Ricardo Wurmus
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79158a5624
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gnu: r-tcgabiolinksgui-data: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
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2022-05-28 23:19:48 +02:00 |
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Ricardo Wurmus
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9d538de266
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gnu: r-curatedtcgadata: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0.
[native-inputs]: Add r-knitr.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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1c4d0fc9a9
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gnu: r-gagedata: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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c56b553e97
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gnu: r-affydata: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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e06ee7a745
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gnu: r-all: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-all): Update to 1.38.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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15e10974ef
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gnu: r-hsmmsinglecell: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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3ff4e48e85
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gnu: r-pasilla: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0.
[propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown.
[native-inputs]: Add r-knitr.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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4f2ac5f19f
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gnu: r-genomationdata: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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d24b0702b6
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gnu: r-genelendatabase: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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7a58c9af46
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gnu: r-copyhelper: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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e437cf10a4
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gnu: r-chromstardata: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0.
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2022-05-28 23:19:47 +02:00 |
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Ricardo Wurmus
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1413f9f214
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gnu: r-celldex: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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3ce819d563
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gnu: r-biscuiteerdata: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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ccb66a16a0
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gnu: r-arrmdata: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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9db43e4979
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gnu: r-aneufinderdata: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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c89eb68ede
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gnu: r-adductdata: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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7feae8098c
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gnu: r-pfam-db: Update to 3.15.0.
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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5efae7b049
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gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.15.0.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0.
[propagated-inputs]: Add r-annotationdbi.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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8ee1246a38
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gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.4.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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3d93251ea5
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gnu: r-bsgenome-hsapiens-ucsc-hg19: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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549a9e6f6a
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gnu: r-leidenbase: Update to 0.1.9.
* gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9.
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2022-05-28 23:19:46 +02:00 |
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Ricardo Wurmus
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319fa58dac
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gnu: r-phyloseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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e0be852a1e
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gnu: r-tximeta: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.0.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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e290d834d9
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gnu: r-tricycle: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.4.0.
[propagated-inputs]: Add r-ggnewscale.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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5ec7143f69
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gnu: r-tcgabiolinks: Update to 2.24.1.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.1.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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a4f03b0a55
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gnu: r-biscuiteer: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.10.0.
[propagated-inputs]: Add r-iranges.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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6f31f4618a
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gnu: r-omnipathr: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.4.0.
[propagated-inputs]: Add r-withr.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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b1c215755a
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gnu: r-dmrseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.16.0.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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4ab8327ba4
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gnu: r-bsseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.32.0.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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397bdc4329
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gnu: r-biotmle: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.20.0.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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4b3f9a16f2
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gnu: r-biotip: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.10.0.
[propagated-inputs]: Remove r-hmisc; add r-scran.
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2022-05-28 23:19:45 +02:00 |
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Ricardo Wurmus
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e8e3d333f0
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gnu: r-bioqc: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.24.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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dba6a33e3d
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gnu: r-bionetstat: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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8fe9bcf0a4
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gnu: r-bionet: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.56.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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f5262fa4ed
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gnu: r-bionero: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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3391ff6ddb
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gnu: r-biomvrcns: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.36.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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7fe83026b7
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gnu: r-biomvcclass: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.64.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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a3a8109fe8
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gnu: r-mvcclass: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.70.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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eb18527e5f
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gnu: r-biomformat: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.24.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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12ee563b41
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gnu: r-biodb: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.0.
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2022-05-28 23:19:44 +02:00 |
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Ricardo Wurmus
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259c003f02
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gnu: r-biocdockermanager: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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6766fbb003
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gnu: r-biocthis: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.6.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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b007802e4b
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gnu: r-basilisk: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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90e56ba6e3
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gnu: r-basilisk-utils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.8.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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5d2c07021c
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gnu: r-dir-expiry: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.4.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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3c65a7d577
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gnu: r-genetclassifier: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.36.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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c4f8b5759a
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gnu: r-minet: Update to 3.54.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.54.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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395f152b92
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gnu: r-biobtreer: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.8.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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24c13f9d64
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gnu: r-bgeedb: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.0.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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00025cdd23
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gnu: r-bgeecall: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.1.
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2022-05-28 23:19:43 +02:00 |
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Ricardo Wurmus
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460680ef90
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gnu: r-beclear: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.12.0.
[propagated-inputs]: Remove r-outliers; add r-dixontest.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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64c3498d9f
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gnu: r-megadepth: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.6.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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c2a8c4c248
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gnu: r-ballgown: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.28.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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d57d65a628
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gnu: r-sushi: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.34.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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8467426bba
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gnu: r-guitar: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.12.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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80f63620c5
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gnu: r-chromstar: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.22.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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93b59aca4c
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gnu: r-snpstats: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.46.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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c784304f9b
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gnu: r-pathview: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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c8f930d575
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gnu: r-ldblock: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.26.0.
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2022-05-28 23:19:42 +02:00 |
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Ricardo Wurmus
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564024c01f
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gnu: r-kegggraph: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.56.0.
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2022-05-28 23:19:41 +02:00 |
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Ricardo Wurmus
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ee71b376ec
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gnu: r-gwascat: Update to 2.28.1.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.28.1.
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2022-05-28 23:19:41 +02:00 |
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Ricardo Wurmus
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b6f77fdc87
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gnu: r-gviz: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.40.1.
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2022-05-28 23:19:41 +02:00 |
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Ricardo Wurmus
|
97ea85bfcf
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gnu: r-ggbio: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.0.
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2022-05-28 23:19:41 +02:00 |
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Ricardo Wurmus
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534743333e
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gnu: r-erma: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.12.0.
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2022-05-28 23:19:41 +02:00 |
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Ricardo Wurmus
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1b75b53a0e
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gnu: r-catalyst: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.20.1.
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2022-05-28 23:19:41 +02:00 |
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Ricardo Wurmus
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e4a8e6dab4
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gnu: r-msmstests: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.34.0.
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2022-05-28 23:19:41 +02:00 |
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Ricardo Wurmus
|
d99da8bb1c
|
gnu: r-msmseda: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.34.0.
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2022-05-28 23:19:40 +02:00 |
|
Ricardo Wurmus
|
f185bf805c
|
gnu: r-biocio: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.6.0.
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2022-05-28 23:19:40 +02:00 |
|
Ricardo Wurmus
|
d34a40c4c0
|
gnu: r-msfeatures: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.4.0.
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2022-05-28 23:19:40 +02:00 |
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Ricardo Wurmus
|
ec7849c360
|
gnu: r-mscoreutils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.8.0.
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2022-05-28 23:19:40 +02:00 |
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Ricardo Wurmus
|
9381702bbc
|
gnu: r-delayedmatrixstats: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.0.
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2022-05-28 23:19:40 +02:00 |
|
Ricardo Wurmus
|
eca29a788b
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gnu: r-sparsematrixstats: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.8.0.
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2022-05-28 23:19:40 +02:00 |
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Ricardo Wurmus
|
5f04cf7bdb
|
gnu: r-scran: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.0.
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2022-05-28 23:19:40 +02:00 |
|
Ricardo Wurmus
|
9631f2190a
|
gnu: r-scater: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.24.0.
[propagated-inputs]: Add r-rcppml.
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2022-05-28 23:19:40 +02:00 |
|
Ricardo Wurmus
|
a8fbcbdb7a
|
gnu: r-scuttle: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.2.
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2022-05-28 23:19:40 +02:00 |
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Ricardo Wurmus
|
816a1ba4dc
|
gnu: r-singler: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 1.10.0.
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2022-05-28 23:19:40 +02:00 |
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Ricardo Wurmus
|
decd8480f6
|
gnu: r-singlecellexperiment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.18.0.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
|
d9d9f78391
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gnu: r-chromvar: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.18.0.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
|
3ef47df3b6
|
gnu: r-motifmatchr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.18.0.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
|
e213375069
|
gnu: r-maftools: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.12.0.
[propagated-inputs]: Add r-dnacopy.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
|
7c9793b3e8
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gnu: r-tfbstools: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.34.0.
|
2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
|
bde757d11d
|
gnu: r-cner: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.32.0.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
|
18fd5759c7
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gnu: r-beachmat: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.12.0.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
|
3db60a25a7
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gnu: r-rhdf5lib: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.18.2.
[source]: Adjust snippet.
[arguments]: Update build phase 'do-not-use-bundled-hdf5.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
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59519a14de
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gnu: r-hdf5array: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.0.
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2022-05-28 23:19:39 +02:00 |
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Ricardo Wurmus
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0b0bce3556
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gnu: r-hitc: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.40.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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8b7e1da3b6
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gnu: r-fithic: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.22.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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3c57f6d2a0
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gnu: r-rgraphviz: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.40.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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c8e364b609
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gnu: r-s4vectors: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.34.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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16419c4639
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gnu: r-preprocesscore: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.58.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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0a9838b17d
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gnu: r-icens: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.68.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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3e7b5a45e4
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gnu: r-m3c: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.18.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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dd33e8b062
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gnu: r-rgreat: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.28.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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0f1295e9e9
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gnu: r-pcatools: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.8.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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9f3d204c3a
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gnu: r-biodist: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.68.0.
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2022-05-28 23:19:38 +02:00 |
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Ricardo Wurmus
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a56e8ec8fb
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gnu: r-biocworkflowtools: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.22.0.
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2022-05-28 23:19:37 +02:00 |
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Ricardo Wurmus
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22300462dd
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gnu: r-biocset: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.10.0.
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2022-05-28 23:19:37 +02:00 |
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Ricardo Wurmus
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d5875494dd
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gnu: r-biocpkgtools: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.0.
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2022-05-28 23:19:37 +02:00 |