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84297 Commits (256bd712648f404451f820eaedab3985df819556)

Author SHA1 Message Date
Ricardo Wurmus f65917f607
gnu: Add r-shaman.
* gnu/packages/bioinformatics.scm (r-shaman): New variable.
2021-10-21 14:34:35 +00:00
Ricardo Wurmus 4885f40b80
gnu: Add r-misha.
* gnu/packages/bioinformatics.scm (r-misha): New variable.
2021-10-21 14:25:44 +00:00
Ricardo Wurmus 42c9b75b25
gnu: Add ciri-long.
* gnu/packages/bioinformatics.scm (ciri-long): New variable.
2021-10-21 13:39:36 +00:00
Ricardo Wurmus 10664fcc8c
gnu: python-biopython: Update to 1.76.
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.76.
(python-biopython-1.73): New variable.
(instrain)[inputs]: Replace python-biopython with python-biopython-1.73.
2021-10-21 13:33:51 +00:00
Ricardo Wurmus 579f31396d
gnu: python-levenshtein: Update to 0.12.2.
* gnu/packages/python-xyz.scm (python-levenshtein): Update to 0.12.2.
2021-10-21 13:33:01 +00:00
Ricardo Wurmus 36cf0253a9
gnu: instrain: Update to 1.5.4.
* gnu/packages/bioinformatics.scm (instrain): Update to 1.5.4.
2021-10-21 13:32:37 +00:00
Ricardo Wurmus 57841a91f5
gnu: Add python-bwapy.
* gnu/packages/bioinformatics.scm (python-bwapy): New variable.
2021-10-21 12:23:25 +00:00
Ricardo Wurmus 6526c35df5
gnu: Add python-pyspoa.
* gnu/packages/bioinformatics.scm (python-pyspoa): New variable.
2021-10-21 12:23:22 +00:00
Ricardo Wurmus ac327cc7fc
gnu: Add r-fcscan.
* gnu/packages/bioconductor.scm (r-fcscan): New variable.
2021-10-21 10:59:16 +00:00
Charles a6ad219dd6
gnu: Add cl-redis.
* gnu/packages/lisp-xyz.scm (cl-redis, sbcl-redis, ecl-redis): New variables.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-10-21 11:42:13 +02:00
Charles Jackson 49347291ef
gnu: Add cl-should-test.
* gnu/packages/lisp-check.scm (cl-should-test, ecl-should-test,
  sbcl-should-test): New variables.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-10-21 11:25:29 +02:00
Charles c0d672853a
gnu: Add cl-rutils.
* gnu/packages/lisp-xyz.scm (cl-rutils, sbcl-rutils, ecl-rutils): New
  variables.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-10-21 11:15:23 +02:00
Tobias Geerinckx-Rice 320c971f8e
gnu: dfu-util: Update to 0.11.
* gnu/packages/flashing-tools.scm (dfu-util): Update to 0.11.
2021-10-21 01:39:02 +02:00
Tobias Geerinckx-Rice 0f522bfb63
gnu: eid-mw: Update to 5.0.28.
* gnu/packages/security-token.scm (eid-mw): Update to 5.0.28.
[arguments]: Remove unused 'make-reproducible phase.
2021-10-21 01:39:02 +02:00
Tobias Geerinckx-Rice 8da4ea7dc6
gnu: flamp: Update to 2.2.07.
* gnu/packages/radio.scm (flamp): Update to 2.2.07.
2021-10-21 01:39:01 +02:00
Tobias Geerinckx-Rice 10c856214e
gnu: font-gnu-unifont: Cross-compile binaries.
* gnu/packages/fonts.scm (font-gnu-unifont)[arguments]: Set CC to
CC-FOR-TARGET in #:make-flags, where it has an effect.  Remove it
from the environment, where it did not.  Respect #:make-flags during
installation.
2021-10-21 01:39:01 +02:00
Tobias Geerinckx-Rice d750f6a89f
gnu: font-gnu-unifont: Update to 14.0.01.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 14.0.01.
[arguments]: Don't explicitly return #t from phases.
2021-10-21 01:39:01 +02:00
Tobias Geerinckx-Rice f743c432cc
gnu: autofs: Update to 5.1.8.
* gnu/packages/file-systems.scm (autofs): Update to 5.1.8.
[arguments]: Don't explicitly return #t from phases.
2021-10-21 01:39:01 +02:00
Tobias Geerinckx-Rice 5c8c7f74e6
gnu: genimage: Factorise substitutions.
* gnu/packages/genimage.scm (genimage)[arguments]: Factorise input
substitution for great line savings; also fun.  Don't sneakily replace
mkdosfs with mkfs.vfat.  Remove obsolete fixes.  Fix tests in their
own 'fix-failing-tests phase.  Don't explicitly return #t from any
phases.
2021-10-21 00:39:50 +02:00
Tobias Geerinckx-Rice 9792e14a66
gnu: ethtool: Update to 5.14.
* gnu/packages/networking.scm (ethtool): Update to 5.14.
2021-10-21 00:39:50 +02:00
Tobias Geerinckx-Rice 49176f0e46
gnu: cdparanoia: Don't build in parallel.
* gnu/packages/cdrom.scm (cdparanoia)[arguments]:
Disable #:parallel-build?.

Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-10-21 00:39:50 +02:00
Tobias Geerinckx-Rice 2782cb38a3
gnu: dragonfly-reverb: Prepare for cross-compilation.
* gnu/packages/music.scm (dragonfly-reverb)[arguments]: Use CC-FOR-TARGET.
2021-10-20 17:21:33 +02:00
Tobias Geerinckx-Rice c1ca2716f8
gnu: dragonfly-reverb: Update to 3.2.5.
* gnu/packages/music.scm (dragonfly-reverb): Update to 3.2.5.
[arguments]: Don't explicitly return #t from phases.
2021-10-20 17:21:33 +02:00
Tobias Geerinckx-Rice 214fb9fbfd
gnu: dpf-plugins: Prepare for cross-compilation.
* gnu/packages/music.scm (dpf-plugins)[arguments]: Set CC in #:make-flags
rather than as an environment variable, and set it to CC-FOR-TARGET.
2021-10-20 17:21:32 +02:00
Tobias Geerinckx-Rice 2e8795cf0c
gnu: dpf-plugins: Update to 1.4.
* gnu/packages/music.scm (dpf-plugins): Update to 1.4.
2021-10-20 17:21:32 +02:00
jgart 19d3cfec72
gnu: python-arrow: Move python-pytz to native-inputs.
* gnu/packages/time.scm (python-arrow)[propagated-inputs]: Move
python-pytz to ...
[native-inputs]: ... here since it is only used for testing purposes.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-20 12:58:50 +03:00
zimoun c650160abb
gnu: Add r-pnwcolors.
* gnu/packages/cran.scm (r-pnwcolors): New variable.
2021-10-20 08:57:27 +00:00
Marcel Schilling f51933aabc
gnu: Add r-mhg.
* gnu/packages/cran.scm (r-mhg): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-10-20 06:25:13 +00:00
Tobias Geerinckx-Rice 4d82dbea45
gnu: allegro: Update to 4.4.3.1.
* gnu/packages/game-development.scm (allegro): Update to 4.4.3.1.
[arguments]: Don't explicitly return #t from phases.
2021-10-20 00:39:16 +02:00
Tobias Geerinckx-Rice 96c747cb29
doc: Fix typo.
* doc/guix.texi (Invoking guix system, Invoking guix home):
Fix ‘are […] two month old’ typo.
2021-10-20 00:39:16 +02:00
Arun Isaac d9c7a10b3d
gnu: phockup: Update to 1.7.1.
* gnu/packages/image.scm (phockup): Update to 1.7.1.
[arguments]: In configure phase, substitute the more specific "'exiftool"
instead of "exiftool". Add wrap-program phase. Do not return #t from custom
phases.
[inputs]: Add python-tqdm.
2021-10-20 01:29:33 +05:30
Tobias Geerinckx-Rice 7455a5a3ee
gnu: jasper: Update to 2.0.33.
* gnu/packages/image.scm (jasper): Update to 2.0.33.
2021-10-19 19:08:22 +02:00
Tobias Geerinckx-Rice 610d8c8967
gnu: dblatex: Update to 0.3.12.
* gnu/packages/docbook.scm (dblatex): Update to 0.3.12.
[arguments]: Don't explicitly return #t from phases.
2021-10-19 19:08:22 +02:00
Nicolas Goaziou a012b27980
gnu: giac: Update to 1.7.0-39.
* gnu/packages/algebra.scm (giac): Update to 1.7.0-39.
2021-10-19 13:20:03 +02:00
Nicolas Goaziou d6d8f34c40
gnu: emacs-company-quickhelp: Update to 2.3.0.
* gnu/packages/emacs-xyz.scm (emacs-company-quickhelp): Update to 2.3.0.
2021-10-19 13:14:19 +02:00
Nicolas Goaziou 39e9393b36
gnu: emacs-shell-command+: Update to 2.3.1.
* gnu/packages/emacs-xyz.scm (emacs-shell-command+): Update to 2.3.1.
2021-10-19 13:12:03 +02:00
la snesne a4ea3c30b4
gnu: emacs-treemacs: Update to 2.9.4.
* gnu/packages/emacs-xyz.scm (emacs-treemacs): Update to 2.9.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-10-19 13:01:40 +02:00
la snesne 340a91d905
gnu: emacs-treemacs-extra: Add missing inputs
* gnu/packages/emacs-xyz.scm (emacs-treemacs-extra)[propagated-inputs]: Add
emacs-all-the-icons, emacs-perspective

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-10-19 13:01:17 +02:00
Efraim Flashner c5258ee6f4
gnu: Add wl-clipboard-x11.
* gnu/packages/xdisorg.scm (wl-clipboard-x11): New variable.
2021-10-19 11:16:16 +03:00
Efraim Flashner 81b31ca8e1
gnu: Add gr-framework.
* gnu/packages/graphics.scm (gr-framework): New variable.
2021-10-19 11:10:43 +03:00
zimoun 14f8d58752
gnu: Add julia-media.
* gnu/packages/julia-xyz.scm (julia-media): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:22:12 +03:00
zimoun 87a6109c33
gnu: Add julia-codeczlib.
* gnu/packages/julia-xyz.scm (julia-codeczlib): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:22:11 +03:00
zimoun dfd7e8215f
gnu: Add julia-transcodingstreams.
* gnu/packages/julia-xyz.scm (julia-transcodingstreams): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:22:11 +03:00
zimoun 4b7b94cac8
gnu: Add julia-functors.
* gnu/packages/julia-xyz.scm (julia-functors): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:22:11 +03:00
zimoun e6cda550e2
gnu: julia-stackviews: Enable tests.
* gnu/packages/julia-xyz (julia-stackviews)[arguments]: Remove #:tests?.
[native-inputs]: Add julia-aqua and julia-documenter.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:06:42 +03:00
zimoun c2051168a3
gnu: julia-paddedviews: Enable tests.
* gnu/packages/julia-xyz (julia-paddedviews)[arguments]: Remove.
[native-inputs]: Add julia-documenter.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:06:40 +03:00
zimoun d36a41279e
gnu: julia-irtools: Enable tests.
* gnu/packages/julia-xyz (julia-irtools)[arguements]: Remove.
[native-inputs]: Add julia-documenter.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:06:39 +03:00
zimoun 78f48af0fe
gnu: julia-colortypes: Enable tests.
* gnu/packages/julia-xyz (julia-colortypes)[arguments]: Remove.
[native-inputs]: Add julia-documenter.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:06:37 +03:00
zimoun 8ee9516a3a
gnu: julia-coordinatetransformations: Enable tests.
* gnu/packages/julia-xyz.scm (julia-coordinatetransformations)[arguments]:
Remove.
[native-inputs]: Add julia-documenter, julia-forwarddiff, julia-unitful.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19 10:06:32 +03:00
Tobias Geerinckx-Rice f3b64ad54e
gnu: gajim: Update to 1.3.3.
* gnu/packages/messaging.scm (gajim): Update to 1.3.3.
[arguments]: Remove 'disable-failing-tests phase, as all now pass.
Don't explicitly return #t from other phases.
2021-10-18 22:03:56 +02:00