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4184 Commits (258e69e10479173fba3064dee0611f1e8f8b6a60)

Author SHA1 Message Date
Andreas Enge d13ffd1580
gnu: cmh: Add patch to work with current fplll.
* gnu/packages/patches/cmh-support-fplll.patch: New file.
* gnu/packages/algebra.scm (cmh)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
2022-06-21 16:12:47 +02:00
Julien Lepiller 3cd53fc08f
gnu: omake: Update to 0.10.5.
* gnu/packages/ocaml.scm (omake): Update to 0.10.5.
* gnu/packages/patches/omake-fix-non-determinism.patch: Adjust for new
  version.
2022-06-18 13:15:20 +02:00
Thiago Jung Bauermann 861108ca6a
gnu: public-inbox: Fixes to allow the testsuite to run
This patch makes the public-inbox testsuite pass. Some tests are skipped,
so the test coverage could likely be increased with more massaging.

Perhaps the most significant change is using tini to run the testsuite so
that the testsuite's sub-processes are reaped. The ‘check’ phase is based on
the one from the mutter package. Thanks to Maxim Cournoyer for pointing out
this solution.

* gnu/packages/patches/public-inbox-fix-spawn-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add new patch.
* gnu/packages/mail.scm (public-inbox)[source]: Add new patch.
[arguments]<#:tests?>: Remove argument.
<#:imported-modules>: Add argument.
<#:modules>: Likewise.
<#:phases>{qualify-paths}: Substitute path for ‘/bin/cp’.
{pre-check}: Don't skip httpd-unix.t test.  Remove unnecessary path
substitutions for “env” and “/bin/sh”.
{check}: Replace with custom version that launches the tests under tini.
[native-inputs]: Add tini.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-17 15:31:33 +02:00
John Kehayias 67c30ff8ad
gnu: rocm: Update to 5.1.3.
All packages updated at the same time as they have a shared version. rocclr is
no longer a stand-alone package, so the previous version is kept as rocclr-4
and the current version is just the source, rocclr-src, needed by rocm-opencl-runtime.

* gnu/packages/patches/rocm-opencl-runtime-3.10.0-includes.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-nocltrace.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Update patches.
* gnu/packages/rocm.scm (rocm-cmake, rocm-device-libs, rocm-comgr,
roct-thunk-interface, rocr-runtime, rocm-opencl-runtime, rocminfo,
rocm-bandwidth-test): Update to 5.1.3.
(roct-thunk-interface)[inputs]: Add libdrm.
[native-inputs]: Add gcc:lib and pkg-config.
(rocclr-src): New variable.
(rocclr-4): New variable (previous version of the package).
(rocm-opencl-runtime)[source]: Remove obsolete patches.
[arguments]: Rewrite with gexps. Add needed #:configure-flags.
[inputs]: Remove rocclr, add numactl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 12:50:06 +02:00
John Kehayias 25809f5a40
gnu: Update llvm-for-rocm: Update to 5.1.3.
* gnu/packages/llvm.scm (llvm-for-rocm): Update to 5.1.3, now based on llvm-14.
[source]{patches}: Remove unneeded patches (add_Object and add_libraries) and add new one (linkdl).
* gnu/packages/patches/llvm-roc-3.0.0-add_libraries.patch,
gnu/packages/patches/llvm-roc-4.2.0-add_Object.patch: Delete files.
* gnu/packages/patches/llvm-roc-5.0.0-linkdl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update to match current patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 12:50:06 +02:00
Vinicius Monego 5d28f089ef
gnu: Add python-zeep.
* gnu/packages/python-web.scm (python-zeep): New variable.
* gnu/packages/patches/python-zeep-Fix-pytest_httpx-test-cases.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com>
2022-06-16 09:25:55 +02:00
Petr Hodina 887b23a73c
gnu: Add kismet.
* gnu/packages/networking.scm (kismet): New variable.
* gnu/local.mk: Add patch.
* gnu/packages/patches/kismet-unbundle-boost.patch: New file.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:22 +02:00
Marius Bakke d73b88d826
gnu: TimescaleDB: Update to 2.7.0.
* gnu/packages/databases.scm (timescaledb): Update to 2.7.0.
[source](snippet): Remove more files.
[source](patches): New field.
* gnu/packages/patches/timescaledb-flaky-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-06-14 23:33:52 +02:00
Artyom V. Poptsov 4ff9f1689d
gnu: java-commons-lang3: Update to 3.12.0
* gnu/packages/java.scm (java-commons-lang3): Update to 3.12.0.
* gnu/packages/patches/java-commons-lang-fix-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-06-13 22:49:13 +02:00
Andreas Enge 5dec5f65ec
gnu: fplll: Update to 5.4.2.
* gnu/packages/algebra.scm (fplll): Update to 5.4.2.
[source]: Remove patch; for unknown reasons the package now compiles
without it.
* gnu/packages/patches/fplll-std-fenv.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister patch.
2022-06-13 17:16:54 +02:00
Ricardo Wurmus 7846896156
gnu: Add js-mathjax-for-r-mathjaxr.
* gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable.
2022-06-13 12:43:31 +02:00
Ludovic Courtès 622545de6c
Merge branch 'master' into staging 2022-06-12 22:49:47 +02:00
Ludovic Courtès 091eb323ba
Merge branch 'master' into staging 2022-06-08 14:53:16 +02:00
Efraim Flashner 413b85ad4f
gnu: Remove unused patch.
* gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-07 19:11:48 +03:00
Efraim Flashner 49a47bdcc5
gnu: python-flake8-polyfill: Fix building with python-flake8@4.
* gnu/packages/python-xyz.scm (python-flake8-polyfill)[source]: Add patch.
* gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-06-07 09:22:35 +03:00
Vagrant Cascadian ce6d8ca443
gnu: ncftp: Build reproducibly.
* gnu/packages/patches/ncftp-reproducible.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/ftp.scm (ncftp): Add patch.
2022-06-05 20:27:37 -07:00
Tobias Geerinckx-Rice cb475aea08
gnu: alpine: Update to 2.26.
* gnu/packages/mail.scm (alpine): Update to 2.26.
[source]: Remove patch.
* gnu/packages/patches/alpine-fix-privacy-policy-crash.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-05 02:00:01 +02:00
Liliana Marie Prikler 731f55aa8d
gnu: epiphany: Update to 42.2.
* gnu/packages/gnome.scm (epiphany): Update to 42.2.
[source]: Remove patches.
* gnu/packages/patches/epiphany-update-libportal-usage.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-06-08 21:25:20 +02:00
Tobias Geerinckx-Rice ce21522706
gnu: sudo: Update to 1.9.11p1.
* gnu/packages/admin.scm (sudo): Update to 1.9.11p1.
[source]: Remove patch again.
* gnu/packages/patches/sudo-missing-sudo_pt_regs-aarch64.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-05 02:00:09 +02:00
Tobias Geerinckx-Rice 3783a7b8e4
gnu: nftables: Update to 1.0.4.
* gnu/packages/linux.scm (nftables): Update to 1.0.4.
[source]: Remove patch.
* gnu/packages/patches/nftables-fix-makefile.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-05 02:00:08 +02:00
Tobias Geerinckx-Rice 5124d0dbe0
gnu: sudo: Fix build on aarch64.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
* gnu/packages/patches/sudo-missing-sudo_pt_regs-aarch64.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-06-05 02:00:00 +02:00
Efraim Flashner 64c043e63a
Merge remote-tracking branch 'origin/master' into staging 2022-06-01 12:42:04 +03:00
Maxim Cournoyer f451a8e80c
gnu: openbox: Patch for Python 3.
* gnu/packages/patches/openbox-python3.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/openbox.scm (openbox)[source]: Apply it.
[arguments]: New field.
[propagated-inputs]: Replace python2-pyxdg with python-pyxdg.
[native-inputs]: Replace python-2 with python-wrapper.
Add autoconf, automake, gettext-minimal and libtool.
2022-05-31 14:54:13 -04:00
Maxim Cournoyer b0193c649f
gnu: Remove 4store.
* gnu/packages/databases.scm (4store): Delete variable.
* gnu/packages/patches/4store-fix-buildsystem.patch: Delete file.
* gnu/packages/patches/4store-unset-preprocessor-directive.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
2022-05-31 14:54:11 -04:00
Maxim Cournoyer 5e25a69e6e
gnu: mozjs: Cleanup to only keep the last version.
* gnu/packages/gnuzilla.scm (mozjs): Preserve only the metadata and otherwise
update fields to use those of mozjs-78.
[arguments]: Use gexps.
[phases]: Delete trailing #t.
[native-inputs]: Use new style.
(mozjs-38, mozjs-52, mozjs-60, mozjs-78): Delete variables.
* gnu/packages/patches/mozjs17-aarch64-support.patch
* gnu/packages/patches/mozjs24-aarch64-support.patch
* gnu/packages/patches/mozjs38-pkg-config-version.patch
* gnu/packages/patches/mozjs38-shell-version.patch
* gnu/packages/patches/mozjs38-tracelogger.patch
* gnu/packages/patches/mozjs38-version-detection.patch
* gnu/packages/patches/mozjs60-riscv64-support.patch: Delete patches.
* gnu/local.mk (dist_patch_DATA): De-register them.
* gnu/packages/games.scm (0ad): Adjust accordingly.
* gnu/packages/gnome.scm (gjs): Likewise.
* gnu/packages/polkit.scm (polkit-mozjs): Likewise.
2022-05-31 14:54:10 -04:00
Maxim Cournoyer 54ef40a1f7
gnu: mia: Update to 2.4.7.
* gnu/packages/patches/mia-fix-boost-headers.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/image-processing.scm (mia): Update to 2.4.7.
[source]: Apply patch.
[configure-flags]: Use the more conventional OFF option value (instead of 0).
[inputs]: Use new style.  Replace python2-lxml by python-lxml.  Replace vtk by
vtk-7.
[native-inputs]: Use new style.  Replace python-2 with python-wrapper.
2022-05-31 14:54:07 -04:00
Maxim Cournoyer 887dec8a51
gnu: itk-snap: Fix build.
* gnu/packages/patches/itk-snap-alt-glibc-compat.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/image-processing.scm (itk-snap): Apply it.
[phases]: Delete trailing #t.
[inputs]: Use new style.  Replace vtk-6 with vtk-7.
2022-05-31 14:54:07 -04:00
Maxim Cournoyer 607e48ba3c
gnu: Add vtk-7.
* gnu/packages/image-processing.scm: (vtk-7): New variable.
* gnu/packages/patches/vtk-7-gcc-10-compat.patch: New patch.
* gnu/packages/patches/vtk-7-hdf5-compat.patch: Likewise.
* gnu/packages/patches/vtk-7-python-compat.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
2022-05-31 14:54:06 -04:00
Maxim Cournoyer aad73bb58e
gnu: Remove rapicorn.
* gnu/packages/graphics.scm (rapicorn): Delete variable.
* gnu/packages/patches/rapicorn-isnan.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31 14:54:05 -04:00
Maxim Cournoyer dc71b4f1c6
gnu: breezy: Update to 3.2.2.
* gnu/packages/patches/breezy-fix-gio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/version-control.scm (breezy): Update to 3.2.2.
[source]{snippet}: Delete pre-generated cythonized C files.
{patches}: Apply patch.
[tests?]: Disable tests.
[phases]{patch-test-shebangs, check}: New phase and override.
[native-inputs]: Add nano, python-cython, python-docutils,
and python-testrepository.
[inputs]: Use new style.  Add python-launchpadlib and python-pygobject.
[description]: Adjust Bazaar URL.
2022-05-31 14:54:02 -04:00
Maxim Cournoyer 88a77bdda1
gnu: Remove python2-pygobject.
* gnu/packages/glib.scm (python2-pygobject, python2-pygobject-2): Delete
variables.
(python-pygobject)[properties]: Delete field.
* gnu/packages/patches/python2-pygobject-2-deprecation.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/gnome.scm (libsecret): Remove commented Python 2 inputs.
2022-05-31 14:53:46 -04:00
Maxim Cournoyer edac21bfc7
gnu: Remove wicd.
The last release is from 2017, stuck on Python 2.

* gnu/packages/wicd.scm: Delete file.
* gnu/packages/patches/wicd-bitrate-none-fix.patch: Delete file.
* gnu/packages/patches/wicd-get-selected-profile-fix.patch: Likewise.
* gnu/packages/patches/wicd-urwid-1.3.patch: Likewise.
* gnu/packages/patches/wicd-wpa2-ttls.patch: Likewise.
* gnu/local.mk: De-register them.
* gnu/services/networking.scm: Remove wicd service...
* doc/guix.texi: ... and its documentation.
* gnu/system/linux-container.scm (containerized-operating-system)
<services-to-drop>: Remove wicd-service-type.
2022-05-31 14:53:42 -04:00
Maxim Cournoyer 64c86457db
gnu: Remove python2-subprocess32.
* gnu/packages/python-xyz.scm (python2-subprocess32): Delete variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31 14:53:39 -04:00
Maxim Cournoyer cfc02804fc
gnu: gourmet: Update to 0.17.4-0-8af29c8 and enable tests.
* gnu/packages/patches/gourmet-sqlalchemy-compat.patch: Add file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/nutrition.scm (gourmet): Update to 0.17.4-0-8af29c8.
[source]: Apply patch.
[python]: Delete argument.
[tests?]: Likewise.
[phases]{prepare-x}: New phase.
{check}: New phase override.
{install-dekstop-file-and-icons}: New phase.
[native-inputs]: Delete python2-distutils-extra, intltool and python2-pygtk.
Add python-dogtail, python-pytest, python-selenium and xorg-server-for-tests.
[inputs]: Delete python2-pygtk, python2-sqlalchemy, python2-lxml,
python2-pillow and python2-elib.intl.
Add gtk+, python-argcomplete, python-beautifulsoup4, python-gst,
python-keyring, python-lxml, python-pillow, python-pycairo, python-pyenchant,
python-pygobject, python-requests, python-scrape-schema-recipe,
python-sqlalchemy.
2022-05-31 14:52:34 -04:00
Maxim Cournoyer 55fc0947d4
gnu: Remove python2-parameterized.
* gnu/packages/check.scm (python2-parameterized): Delete variable.
* gnu/packages/patches/python2-parameterized-docstring-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31 14:52:26 -04:00
Maxim Cournoyer d11d27e2e4
gnu: guile-ac-d-bus: Run test suite.
* gnu/packages/patches/guile-ac-d-bus-fix-tests.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile-xyz.scm (guile-ac-d-bus)
[source]: Apply patch.
[phases]{check}: New phase.
[native-inputs]: Add bash-minimal.
2022-05-31 11:20:28 -04:00
yarl baudig 6169c582d1
gnu: emacs-helpful: Update to 0.19
* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19.
[source]: Use the patch.
* gnu/local.mk (dist_patch_DATA): Register the patch.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-31 06:16:18 +02:00
Greg Hogan 092ee35155
gnu: casync: Update to 99559cd1.
* gnu/packages/sync.scm (casync): Update to 99559cd1.
[source]: Remove patch.
[arguments]: Fix installation.
[native-inputs]: Add python.
[inputs]: Add eudev.
* gnu/packages/patches/casync-renameat2-declaration.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-30 16:34:40 +02:00
Morgan Smith 3f31525546
gnu: GCC: Add cross environment variables patch to GCC 12.
* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add
gcc-12-cross-environment-variables.patch.
* gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-30 16:34:39 +02:00
Roel Janssen 48efbde7a9
gnu: virtuoso-ose: Update to 7.2.7.
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.7; Run autogen
  after applying the patch below.
* gnu/packages/patches/virtuoso-ose-remove-pre-built-jar-files.patch:
  New file.
2022-05-30 09:03:02 +02:00
Tobias Geerinckx-Rice 64e78659f4
gnu: irrlicht: Update to 1.8.5.
* gnu/packages/games.scm (irrlicht): Update to 1.8.5.
[source]: Use unmodified Debian patches rather than manually maintain
a custom mash-up.
[arguments]: Add a new 'delete-broken-install-rule phase instead.
Don't explicitly return #t from phases.
* gnu/packages/patches/irrlicht-link-against-needed-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-05-29 02:00:00 +02:00
Vivien Kraus 3695a8d32e
gnu: minetest: Update to 5.5.1.
* gnu/local.mk (dist_patch_DATA): Remove minetest-add-MINETEST_MOD_PATH.patch.
* gnu/packages/minetest.scm (minetest): Update to 5.5.1.
[patches]: Don’t use the patch anymore.
[#:configure-flags]: Point cmake to irrlicht-for-minetest and zstd.
[inputs]: Use irrlicht-for-minetest instead of irrlicht, and add zstd.
(minetest-data): Update hash.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-05 12:11:05 +02:00
Efraim Flashner 572bc6d7bd
gnu: Remove unreferenced patch.
This is a follow-up to a08c21f206.

* gnu/packages/patches/libmicrohttpd-0.9.73-test-ssl3.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-01 22:55:27 +03:00
Marius Bakke 8d653c08b7
gnu: LLVM, Clang, LLD: Update to 14.0.4.
* gnu/packages/llvm.scm (%llvm-monorepo-hashes): Adjust for 14.0.4.
(%llvm-patches): Likewise.
(llvm-14, clang-14, lld-14): Update to 14.0.4.
* gnu/packages/patches/clang-14.0-libc-search-path.patch: Adjust for upstream
changes.
2022-06-01 21:41:23 +02:00
Ricardo Wurmus 93c97bfffb
gnu: pigx-bsseq: Update to 0.1.7.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.7.
[source]: Remove patch.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove automake and autoconf.
* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2022-06-01 12:41:59 +02:00
Ricardo Wurmus 6e54ce9ca9
gnu: pigx-chipseq: Update to 0.1.0.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.1.0.
[source]: Remove patch.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove autoconf and automake.
* gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2022-06-01 12:19:48 +02:00
Ludovic Courtès 7097e98586
Merge branch 'master' into staging 2022-05-26 17:11:20 +02:00
Liliana Marie Prikler d37c7f7ad4
gnu: emacs-deferred: Fix wrong number of arguments.
* gnu/packages/patches/emacs-deferred-fix-number-of-arguments.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-deferred)[patches]: Use it here.
* gnu/local.mk (dist_patch_DATA): Add it here.
2022-05-27 01:49:52 +02:00
Tobias Geerinckx-Rice 1290fce44d
gnu: ytnef: Update to 2.0.
* gnu/packages/mail.scm (ytnef): Update to 2.0.
[source]: Remove patches.
* gnu/packages/patches/ytnef-CVE-2021-3403.patch,
gnu/packages/patches/ytnef-CVE-2021-3404.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2022-05-22 02:00:08 +02:00
Ludovic Courtès cdb6b19b5f
gnu: gcc@12: Add missing file.
Fixes <https://issues.guix.gnu.org/55616>.
Reported by Tim Rakowski <tim.rakowski@gmail.com>.

This is a followup to 37e29ccd33.

* gnu/packages/patches/gcc-12-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-05-24 21:53:02 +02:00