me/guix
Archived
1
0
Fork 0
Code Activity
127657 commits 1 branch 0 tags 410 MiB
Commit graph

127657 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus
25da6c744e
gnu: r-ancombc: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.4.0.

Change-Id: Idccde9e571c9ee7b0014bbe4f7328e5b37d764d9
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4771d5687c
gnu: r-anaquin: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.26.0.

Change-Id: I74a39d84856646bcbe0bbc9006c92095145017be
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
578489abe5
gnu: r-amaretto: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.18.0.

Change-Id: I007bd666a0344d206b418d0c45a816518c5dc65c
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
84e9f46720
gnu: r-amplican: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.24.0.

Change-Id: Ifc0a8d5d2a98a4025ba85759bce75a452275f065
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6f7723c3ce
gnu: r-amountain: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.28.0.

Change-Id: If5cdf59afc38a70335b682b0687b63f33db77a63
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4658cffbfd
gnu: r-airpart: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.10.0.

Change-Id: Iafee8663fb558b5d73f662a4ea1fb0a1999e109e
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
77d2e3167d
gnu: r-aims: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-aims): Update to 1.34.0.

Change-Id: I494a799b261fedc20204837edbd9017e540de81f
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ac4e8f6cfd
gnu: r-adductomicsr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.18.0.

Change-Id: I4149f8e884c6e8486c5006103c5dd2da82a070e1
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ecd66e4010
gnu: r-agilp: Update to 3.34.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.34.0.

Change-Id: Iae3bbb41a891da0da550ad66ce686fe53fc35be7
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e628902ae8
gnu: r-aggregatebiovar: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.12.0.

Change-Id: I4fc26155d43bf89bc5c937d59bae3960d79f1429
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
a8212a42d9
gnu: r-agdex: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.50.0.

Change-Id: I2e9bc52fc339ce7300f13485a16f7e674ed7cb73
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e3acce66d9
gnu: r-affyrnadegradation: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.48.0.

Change-Id: I2f12a2ada8aa83851a25cd16884c2c72e2ab3f02
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
97b1261e63
gnu: r-affyplm: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.78.0.

Change-Id: I96fe37a22d07abc00125df0a229cf7d2d0d136c7
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
14d87c1819
gnu: r-affylmgui: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.76.0.

Change-Id: I169ee4e2a1462140fe2a203ef4a934fcf386a566
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
8ea9b315fd
gnu: r-affyilm: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.54.0.

Change-Id: I1b5989c62da7ce108d3e8ec344fd47a7b33f2856
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4d0c23545b
gnu: r-affixcan: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.20.0.

Change-Id: Ica782aa7cb2603374425e2abc921ade43592aa02
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
c02bc41c68
gnu: r-adsplit: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.72.0.

Change-Id: I2851c235df8c18ae50b931736d65f02aa4403d39
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2f0f6284d1
gnu: r-adimpute: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.12.0.

Change-Id: I46dae4da51b0a47b8cdffdcd919828415b32d131
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
fc9baf4ad2
gnu: r-adamgui: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.18.0.

Change-Id: Iabe992f09b65994038340e564de3be62ffdae5e3
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2662a6af48
gnu: r-adam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.18.0.

Change-Id: I33e560dba8bade0b474b8911c82f71bd768e37a5
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
de5c088e06
gnu: r-adacgh2: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.42.0.

Change-Id: I3a08c5e0c0651c3cb35329de5ce97f660e48ae43
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
7e7d075194
gnu: r-absseq: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.56.0.

Change-Id: I417b2bc58c196fce30a389ae3b999306a0b83893
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
d08d58d828
gnu: r-abarray: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.70.0.

Change-Id: Ibdbf0deb2efad33dffee619c4f8a80f90c815d37
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6ea450f390
gnu: r-debcam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.20.0.
[arguments]: Remove old comment and enable tests.
[inputs]: Replace icedtea with openjdk11.

Change-Id: Id8afa7e53d69fa7767901249cab58fe5555d0e48
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
bcf0ecd1ec
gnu: Add r-hpo-db. 
* gnu/packages/bioconductor.scm (r-hpo-db): New variable.

Change-Id: I4de4bde150f5ff5634e83a6e2e715cddd30db9b2
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6304d3cce6
gnu: Add r-mpo-db. 
* gnu/packages/bioconductor.scm (r-mpo-db): New variable.

Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
48bf30e3b1
gnu: Add r-fancova. 
* gnu/packages/cran.scm (r-fancova): New variable.

Change-Id: I9bfef352be86c08707edfee0bfb171094114d158
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
75ce5b0466
gnu: Add r-collapse. 
* gnu/packages/cran.scm (r-collapse): New variable.

Change-Id: Ib6690a85987e14930057ed960fdd229706b0c35d
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
4f85beac2d
gnu: Add r-msexperiment. 
* gnu/packages/bioconductor.scm (r-msexperiment): New variable.

Change-Id: I707addc076f36bab7f6e96953f5fbd614580825e
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
bbe7ea0d27
gnu: Add r-sparsearray. 
* gnu/packages/bioconductor.scm (r-sparsearray): New variable.

Change-Id: Ibc5b5a518206d492dd5b912294da3967881b5ccd
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
f80de2f03f
gnu: Add r-metabocoreutils. 
* gnu/packages/bioconductor.scm (r-metabocoreutils): New variable.

Change-Id: I58880565005e05a8a87c97e4611cdba8489515ab
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
7a14f9365a
guix: Upgrade to Bioconductor 3.18. 
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.18.
* guix/import/cran.scm (%bioconductor-version): Same.

Change-Id: Ic3fc2e6ab6b5f6f6e55662f81baee67391158c5b
 2023-11-03 22:49:10 +01:00
Vivien Kraus
1c41971e72
gnu: Add calls. 
* gnu/packages/gnome.scm (libcallaudio): New variable.
* gnu/packages/patches/calls-disable-application-test.patch: New file.
* gnu/packages/patches/calls-disable-sip-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register them here.

Change-Id: I6f0485e4c73536c576713005cf7cd74610923a21
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-11-02 18:59:13 +01:00
Vivien Kraus
492e621a57
gnu: Add libcall-ui. 
* gnu/packages/gnome.scm (libcall-ui): New variable.
* gnu/packages/patches/libcall-ui-make-it-installable.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.

Change-Id: I47c403d12c90f9371a8065d2d8d8e829225e5f0c
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-11-02 18:59:13 +01:00
Vivien Kraus
60632b0a14
gnu: Add libcallaudio. 
* gnu/packages/telephony.scm (libcallaudio): New variable.

Change-Id: I41cfe14136858fe0b2a302a9ed8d624d44ad2a95
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-11-02 18:59:13 +01:00
Vivien Kraus
037e30cf13
gnu: Add sofia-sip. 
* gnu/packages/telephony.scm (sofia-sip): New variable.

Change-Id: I18dd31fa62f5cfe528d7558915135f17d49b798d
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-11-02 18:59:13 +01:00
Vivien Kraus
a94ec292d2
gnu: feedbackd: Update to 0.2.1. 
* gnu/packages/patches/feedbackd-use-system-gmobile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/gnome.scm (feedbackd): Update to 0.2.1.
[origin]<patches>: Add “feedbackd-use-system-gmobile.patch”.
<snippet>: Remove the gmobile submodule.
[inputs]: Add gmobile.

Change-Id: I06521c1673efb6aea1d163410fdf3d0206b57d8a
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-11-02 18:58:11 +01:00
Vivien Kraus
ea51a3885c
gnu: Add gmobile. 
* gnu/packages/gnome.scm (gmobile): New variable.
* gnu/packages/patches/gmobile-make-it-installable.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.

Change-Id: If36413dfa1ee1e6156f2652fa86282283b592b36
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-11-02 18:57:42 +01:00
Vivien Kraus
8cd5eebd11
gnu: adwaita-icon-theme: Update to 44.0. 
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 44.0.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 14:21:29 +01:00
Vivien Kraus
26485fc575
gnu: dbus: Update to 1.15.8. 
* gnu/packages/glib.scm (dbus): Update to 1.15.8.
[arguments]: Convert to list of G-Expressions.
[native-inputs]: Add autoconf, autoconf-archive, automake, libtool and
which.  Sort alphabetically.

Change-Id: I1833eb51ab37f138ec4d007230d84b541d66170d
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:46 +01:00
Vivien Kraus
3101acd8f0
gnu: gobject-introspection: Update to 1.78.1. 
* gnu/packages/glib.scm (gobject-introspection): Update to 1.78.1.

Change-Id: If76a6305f176f08c1b389c52ecd9d265ece1459d
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:46 +01:00
Vivien Kraus
11ce76c936
gnu: dbus-glib: Update to 0.112. 
* gnu/packages/glib.scm (dbus-glib): Update to 0.112.

Change-Id: I9630b1ece91bd5f32fd96142403146506724c5ec
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:46 +01:00
Vivien Kraus
a30f0ce302
gnu: libaccounts-glib: Update to 1.26. 
* gnu/packages/glib.scm (libaccounts-glib): Update to 1.26.

Change-Id: I593ece04e448e6a19360f596b43ad06c2f1cc796
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:46 +01:00
Vivien Kraus
7503c5ffca
gnu: libsigc++: Update to 3.6.0. 
* gnu/packages/glib.scm (libsigc++): Update to 3.6.0.

Change-Id: Ib17c03b359122d46ccace887e7583e3e94ed76c3
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:46 +01:00
Vivien Kraus
b175ff3043
gnu: glibmm: Update to 2.78.0. 
* gnu/packages/glib.scm (glibmm): Update to 2.78.0.

Change-Id: I6751a06ff21351564381421d414ddc94bd0a0046
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:46 +01:00
Vivien Kraus
e4405f3e8b
gnu: glib: Update to 2.78.0. 
* gnu/packages/glib.scm (glib): Update to 2.78.0.

Change-Id: Ibfe1f44e15510ccb2e7fd002be63c5dceab34ca1
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:45 +01:00
Vivien Kraus
b125b9deee
gnu: python-pygobject: Update style. 
* gnu/packages/glib.scm (python-pygobject) [source]<sha256>: Reindent.
<snippet>: Convert to G-Expression.  Remove trailing #f.
[arguments]: Convert to list of G-Expressions.
[native-inputs]: Drop labels.

Change-Id: I325de196b79cbdd0acaed3c40be42aa7335abcae
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:45 +01:00
Vivien Kraus
54eb6d6e8a
gnu: python-pygobject: Update to 3.46.0. 
* gnu/packages/glib.scm (python-pygobject): Update to 3.46.0.
[snippet]: Also remove test_overrides_gdk.py.

Change-Id: Ia046b0a597097e27c48428ec893b241d17b9006d
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:45 +01:00
Vivien Kraus
e41f35ba08
gnu: perl-glib: Update to 1.3294. 
* gnu/packages/glib.scm (perl-glib): Update to 1.3294.

Change-Id: I8cfc1d61e6c5d0b5e37f1eb210951c9c609650d9
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:45 +01:00
Vivien Kraus
5346c72126
gnu: perl-glib-object-introspection: Update to 0.051. 
* gnu/packages/glib.scm (perl-glib-object-introspection): Update to 0.051.

Change-Id: I7e6c79bca58d9054df186566ce2bf019764dc131
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 08:32:45 +01:00