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Author SHA1 Message Date
Ricardo Wurmus 71c4d03835
gnu: r-curatedtcgadata: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.0.

Change-Id: If094ca958ff73b6aecd39c3d91042e9e75eb2075
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus ffd1da975f
gnu: r-gagedata: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.40.0.

Change-Id: Ifdbcee3c7c6c354530d62cc79f05cf30be432f3a
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus e9a99d768b
gnu: r-affydata: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.50.0.

Change-Id: I653e146ff884bd72771ed779c4d9d65b03a7fdd9
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus aef69bfc03
gnu: r-all: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-all): Update to 1.44.0.

Change-Id: I9f2817b571d2c42d57927370b51319e52388a3b5
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 1d0674befe
gnu: r-hsmmsinglecell: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.22.0.

Change-Id: I541a4637f7ec9b6e85e52c8f222002adef230a50
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 54efc5bd86
gnu: r-pasilla: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.30.0.

Change-Id: I3d309814bc0237181540e1c84ad8feca34f2fcef
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 1deaa74a6f
gnu: r-msigdb: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.10.0.

Change-Id: I32ad805ff92e7084eb682c239037978f183c323e
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 88beafd5dc
gnu: r-msdata: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.42.0.

Change-Id: I94953464f1c9ef0e361c68a69fdbc9b11f46c4f8
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 13c2e3c9e4
gnu: r-minfidata: Update to 0.48.0. 
* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.48.0.

Change-Id: I8485d570629d23b294a9ea4143a88ed91ae737af
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus cbb019eef6
gnu: r-mousegastrulationdata: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.16.0.

Change-Id: I18a4fe4dbbcf3cc7f19084170fc8280fd4d5e7cf
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 55b3f66131
gnu: r-macrophage: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.18.0.

Change-Id: I51228161aac4cb10470aa2262fdc507a4cb903ec
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 0af8e69b32
gnu: r-italicsdata: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.40.0.

Change-Id: I55a0100167f98571a562c0ca5fddbe41afeaf3d7
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus f4f7b82c5e
gnu: r-illumina450probevariants-db: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.38.0.

Change-Id: Ic5af6f5e7ba653edc5ed785f2b3e9d522e7586af
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus da790d92e5
gnu: r-hdcytodata: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.0.

Change-Id: I06afd0ffdd8c1b77ce03e9aabe59f150c28e6141
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus c916f39b5c
gnu: r-genomationdata: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.34.0.

Change-Id: Ia8e4535efcdcbb0e706b1e9682594467ab8c2fda
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 8369898fb0
gnu: r-genelendatabase: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.38.0.

Change-Id: Idf120599c34af21cd3c5c854d434c93c702f0cd4
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 95c3baf59f
gnu: r-flowsorted-blood-epic: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.6.0.

Change-Id: I458aa7c0ac482d1e60d6afb66b236ea6886d7ce6
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 43e6cc3189
gnu: r-flowsorted-blood-450k: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.40.0.

Change-Id: Ia2d2ae18c80d3a4a7858026a424da1537d657782
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 4c4f07ca26
gnu: r-copyhelper: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.34.0.

Change-Id: I2cfa340e85fb723615295949ef614db1761f9c6e
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus f0591739ce
gnu: r-chromstardata: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.28.0.

Change-Id: I5146185d21a589b93152fe67df4e4a100a0b0a33
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 225f49fb30
gnu: r-champdata: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.34.0.

Change-Id: I658aab6c78df1fcbd7fb4d34df144635a2a10347
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 7b5db44490
gnu: r-celldex: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.12.0.

Change-Id: I565b21aafa46cb710a8acc3ab16b7905614e6838
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 1aac5e7bc8
gnu: r-breakpointrdata: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.20.0.

Change-Id: I1fe98a2e5fd8bf4b3106c7315dda8dee906c5152
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 6c1bb9047e
gnu: r-biscuiteerdata: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.16.0.
[propagated-inputs]: Add r-genomicranges.

Change-Id: I5459630b266f04bbac50562cb134e9ca28bbc2d7
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus cd5a4ac6df
gnu: r-bladderbatch: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.40.0.

Change-Id: I2d5ec797815dd0101da8692b1fa320020c33ab85
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 09ee801fe9
gnu: r-bcellviper: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.38.0.

Change-Id: Iaac28d6376364c0d0e30c29deb6df22c40b18b29
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus ee966f03d5
gnu: r-arrmdata: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.38.0.

Change-Id: Id1c900cd1a058057d18129c7f2d373bc4772d5cd
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 9512db59ab
gnu: r-aneufinderdata: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.30.0.

Change-Id: I94049747ac40bfe1926bfe6a34727c35e1fb6578
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 8f70c2352d
gnu: r-adductdata: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.18.0.

Change-Id: I268b9dde5e1913d17e195a77005e3c28b41f6aca
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus b6fb97a250
gnu: r-pfam-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.18.0.

Change-Id: Iee6ad8fe9188cb6eb5df5f163e5af228a783b682
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus f16f8105e8
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.18.0.

Change-Id: Ic11773dbb44ba5c90ea69142c03bbe7292ca03a6
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 5265421826
gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.5. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.5.
[propagated-inputs]: Add r-genomeinfodb.

Change-Id: I77c7e216286314619c05272a0baffb68dcd5a3e6
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 505aac07c4
gnu: r-org-mm-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.18.0.

Change-Id: Idee9907070a23dd79bf77e2d4a7e8ac17419826a
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus f13e407689
gnu: r-org-dr-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0.

Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 8445ad15ec
gnu: r-org-dm-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0.

Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 0adeabcf53
gnu: r-org-ce-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0.

Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 297fc0d76c
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Update to 0.6.1. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Update to 0.6.1.

Change-Id: I142318c4854c75f27bcd1bfe4bfc389cbc8b3725
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus c5a934df85
gnu: r-go-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.18.0.

Change-Id: I90ff2421b742369847353aaf32cf8bc4651afda7
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus d9de950ac6
gnu: r-genomeinfodbdata: Update to 1.2.11. 
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.11.

Change-Id: Iacb39950f70c8affe457330df8b43260e71ab548
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 2ee9cce50f
gnu: r-bsgenome-mmusculus-ucsc-mm10: Update to 1.4.3. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): Update to 1.4.3.

Change-Id: Idbf573d2b4931550122119eed67879c2b13ed52f
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 6ee0d63dfc
gnu: r-reactome-db: Update to 1.86.2. 
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.86.2.

Change-Id: I8312c151f89ef27c5f75adbdf27c098e77f05453
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 287c5b085b
gnu: r-org-sc-sgd-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.18.0.

Change-Id: I1f7a497f0b36b1fe336343e215fe5c3f179b11ed
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 8ec5a25eff
gnu: r-org-bt-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.18.0.

Change-Id: I4385882eeb83326af88141b301f892632f6cf678
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus d2573f4e28
gnu: r-org-eck12-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.18.0.

Change-Id: Ic8b25521c9a735522c69e3d696d8a514f8d6d17c
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 389c6082a4
import/cran: Set HOME when ExperimentHub is among the inputs. 
* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when
ExperimentHub is among inputs.

Change-Id: Ie3a2443934704eed8694a76a651b806209722421
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus 29353820f2
import/cran: Also update annotation and experiment packages. 
* guix/import/cran.scm (latest-bioconductor-release): Determine package type
and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(%bioconductor-updater): Compose all bioconductor predicates.

Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
 2024-01-22 13:54:44 +01:00
Jean-Pierre De Jesus DIAZ d264237d55
gnu: make-crust-package: Unite firmware and tools. 
* gnu/packages/firmware.scm (make-crust-package): Perform union of
make-crust-firmware and make-crust-tools.
* gnu/packages/firmware.scm (make-crust-firmware): New procedure.

Change-Id: I687bb6d53aae9bd60ed988baf9d17e92f31faa7b
 2024-01-22 11:26:57 +01:00
Jean-Pierre De Jesus DIAZ 938f153784
gnu: Add make-crust-tools. 
* gnu/packages/firmware.scm (make-crust-tools): New procedure.

Change-Id: Iac05ecf1796e4c10692a423c12423ea9b078d141
 2024-01-22 11:26:57 +01:00
Jean-Pierre De Jesus DIAZ dde246ed41
gnu: make-crust-package: Use or1k-elf as target. 
* gnu/packages/firmware.scm (make-crust-package): Use or1k-elf as the
target.

Change-Id: I6c8bf053527f1e12e35402f18cebf8e75557c788
 2024-01-22 11:26:56 +01:00
Jean-Pierre De Jesus DIAZ fa0b2cdab3
gnu: make-crust-package: Update to 0.6. 
* gnu/packages/firmware.scm (make-crust-package): Update to 0.6.  Do not
install host tool as it is not built by default.

Change-Id: Ia79ae8208589601d32235f6d8ace9dce3f8d74f9
 2024-01-22 11:26:56 +01:00