8a7ef6dc1f
gnu: linux-libre 4.9: Update to 4.9.265.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.265.
(linux-libre-4.9-pristine-source): Update hash.
2021-04-08 15:12:05 -04:00
e60c7acf5a
gnu: linux-libre 4.14: Update to 4.14.229.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.229.
(linux-libre-4.14-pristine-source): Update hash.
2021-04-08 15:12:05 -04:00
eef44c8732
gnu: linux-libre 4.19: Update to 4.19.185.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.185.
(linux-libre-4.19-pristine-source): Update hash.
2021-04-08 15:12:05 -04:00
c44dd82a66
gnu: linux-libre 5.4: Update to 5.4.110.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.110.
(linux-libre-5.4-pristine-source): Update hash.
2021-04-08 15:12:05 -04:00
1cdf95c14f
gnu: linux-libre 5.10: Update to 5.10.28.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.28.
(linux-libre-5.10-pristine-source): Update hash.
2021-04-08 15:12:04 -04:00
adb4c05aa6
gnu: linux-libre: Update to 5.11.12.
...
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.12.
(linux-libre-5.11-pristine-source): Update hash.
2021-04-08 15:12:04 -04:00
bdc96f6e0e
system: vm: Set a larger value for the msize option of the 9p file system.
...
Fixes <https://issues.guix.gnu.org/47225 >.
* gnu/system/vm.scm (%default-msize-value): New variable.
(%linux-vm-file-systems): Use it as the value of the msize option.
(mapping->file-system): Likewise.
Reported-by: Leo Famulari <leo@famulari.name>
2021-04-08 15:12:01 -04:00
c762df5478
etc/committer: Disable diff colors.
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Reported by: morgansmith on IRC.
* etc/committer.scm.in (diff-info): Invoke "git diff" with "--no-color".
2021-04-08 17:12:06 +02:00
2afc79b51d
ci: Introduce new subsets.
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Introduce 'images, 'system-tests and 'tarball subsets.
* gnu/ci.scm (cuirass-jobs): Break the 'all subset into smaller subsets.
2021-04-08 15:24:03 +02:00
14ada96451
ci: Remove the job period argument.
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Cuirass now deals with periodicity directly on specifications.
* gnu/ci.scm (derivation->job): Remove the period argument.
(image-jobs, system-test-jobs, tarball-jobs): Adapt them.
2021-04-08 15:24:03 +02:00
5f0c3535aa
gnu: r-genomicfeatures: Update to 1.42.3.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.3.
2021-04-08 13:28:24 +02:00
e0147aa46f
gnu: r-gviz: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.34.1.
2021-04-08 13:28:24 +02:00
14a4c30828
gnu: r-universalmotif: Update to 1.8.4.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.4.
2021-04-08 13:28:24 +02:00
8a7933f37e
gnu: r-rsubread: Update to 2.4.3.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.3.
2021-04-08 13:28:24 +02:00
215b0ced02
gnu: r-chippeakanno: Update to 3.24.2.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.2.
[propagated-inputs]: Add r-dplyr.
2021-04-08 13:28:24 +02:00
55185f9b3f
gnu: r-diffbind: Update to 3.0.15.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.15.
2021-04-08 13:28:24 +02:00
9d2ca98213
gnu: r-genomeinfodb: Update to 1.26.6.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.6.
2021-04-08 13:28:24 +02:00
fb73d7d10d
gnu: r-delayedarray: Update to 0.16.3.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3.
2021-04-08 13:28:23 +02:00
71ca8fd40b
gnu: Add texlive-mweights.
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* gnu/packages/tex.scm: New variable.
2021-04-08 11:18:06 +01:00
bb4f47a7f6
gnu: axoloti-runtime: Simplify build.
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* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Remove
unnecessary environment variable assignments in custom 'build phase.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-08 11:00:05 +03:00
5c9954490c
gnu: gcc-arm-none-eabi: Fix C++ header location.
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Previously the C++ headers where installed in the include folder, overwriting
some C headers.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)
[native-search-paths]: Add C++ header locations.
(gcc-arm-none-eabi-7-2018-q2-update)[native-search-paths]: Add C++
header locations.
(make-libstdc++-arm-none-eabi)[arguments]: Change C++ header install
location to include/c++.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-08 10:58:54 +03:00
83991a34d5
etc/committer: Recompute hunks before processing changes.
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* etc/committer.scm.in (main): Re-evaluate diff-info after processing
insertions.
2021-04-08 03:10:14 +02:00
43fb6b765d
etc/committer: Record minimal context for hunks to avoid problems.
...
With zero context new definitions would be applied to the wrong location in
the file. More context lines lead to larger hunks, though, so we use just one
line of context.
* etc/committer.scm.in (diff-info): Invoke "git diff" with one line of
context.
[info]: Merge line break and first line.
(lines-to-first-change): New procedure.
(old-sexp, new-sexp): Use it.
2021-04-08 03:10:14 +02:00
56270c1275
etc/committer: Define delay duration as a variable.
...
* etc/committer.scm.in (%delay): New variable.
(main): Use it.
2021-04-08 03:10:14 +02:00
c8c3afe848
etc/committer: Handle package additions.
...
* etc/committer.scm.in (<hunk>)[diff]: Rename this field...
[diff-lines]: ...to this.
[definition?]: New field.
(hunk->patch): Join diff lines.
(diff-info): Do not join diff lines; record whether a hunk is a new
definition.
(commit-message): Rename this procedure...
(change-commit-message): ...to this.
(add-commit-message): New procedure.
(main): Handle new package definitions before changes.
2021-04-08 03:10:13 +02:00
e1a38cbad8
gnu: r-sn: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-sn): Update to 2.0.0.
2021-04-08 03:10:13 +02:00
2e36f4a1c4
gnu: r-sfsmisc: Update to 1.1-10.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-10.
2021-04-08 03:10:13 +02:00
9493b3e9a7
gnu: r-e1071: Update to 1.7-6.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-6.
[propagated-inputs]: Add r-proxy.
2021-04-08 03:10:13 +02:00
d98cecdd07
gnu: r-xml: Update to 3.99-0.6.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.6.
2021-04-08 03:10:13 +02:00
d6fd6908c2
gnu: r-rsqlite: Update to 2.2.5.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.5.
2021-04-08 03:10:13 +02:00
e2851d10db
gnu: r-catools: Update to 1.18.2.
...
* gnu/packages/statistics.scm (r-catools): Update to 1.18.2.
2021-04-08 03:10:13 +02:00
63c5888c43
gnu: r-dbplyr: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.1.1.
2021-04-08 03:10:13 +02:00
55378aa21d
gnu: r-survival: Update to 3.2-10.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.2-10.
2021-04-08 03:10:13 +02:00
971a997f75
gnu: r-stars: Update to 0.5-2.
...
* gnu/packages/cran.scm (r-stars): Update to 0.5-2.
2021-04-08 03:10:13 +02:00
0ec1b08a52
gnu: r-lwgeom: Update to 0.2-6.
...
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-6.
[inputs]: Add zlib.
2021-04-08 03:10:13 +02:00
5a2602032f
gnu: r-ragg: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-ragg): Update to 1.1.2.
2021-04-08 03:10:13 +02:00
ded1599829
gnu: r-textshaping: Update to 0.3.3.
...
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.3.
2021-04-08 03:10:13 +02:00
2224e02779
gnu: r-bbotk: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.2.
2021-04-08 03:10:13 +02:00
6ec08e19b3
gnu: r-mlr3learners: Update to 0.4.5.
...
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.4.5.
2021-04-08 03:10:12 +02:00
ae3df456bb
gnu: r-mlr3misc: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.8.0.
2021-04-08 03:10:12 +02:00
b83b2a3a4b
gnu: r-phangorn: Update to 2.6.3.
...
* gnu/packages/cran.scm (r-phangorn): Update to 2.6.3.
[native-inputs]: Add r-knitr.
2021-04-08 03:10:12 +02:00
6e93ab0666
gnu: r-qtl: Update to 1.48-1.
...
* gnu/packages/cran.scm (r-qtl): Update to 1.48-1.
2021-04-08 03:10:12 +02:00
3ba3fb71fb
gnu: r-altmeta: Update to 3.3.
...
* gnu/packages/cran.scm (r-altmeta): Update to 3.3.
2021-04-08 03:10:12 +02:00
ed5f5f0274
gnu: r-tidyposterior: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-tidyposterior): Update to 0.1.0.
[propagated-inputs]: Remove r-lifecycle; add r-tune and r-workflowsets.
2021-04-08 03:10:12 +02:00
7ac3cefc64
gnu: r-slider: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-slider): Update to 0.2.1.
[propagated-inputs]: Add r-ellipsis.
2021-04-08 03:10:12 +02:00
47d8e0c1ad
gnu: r-yardstick: Update to 0.0.8.
...
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.8.
[propagated-inputs]: Add r-vctrs.
2021-04-08 03:10:12 +02:00
f5c72b2cd7
gnu: r-muhaz: Update to 1.2.6.3.
...
* gnu/packages/cran.scm (r-muhaz): Update to 1.2.6.3.
2021-04-08 03:10:12 +02:00
3974902362
gnu: r-cpp11: Update to 0.2.7.
...
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.7.
2021-04-08 03:10:12 +02:00
a387de2fa7
gnu: r-spatstat: Update to 2.1-0.
...
* gnu/packages/cran.scm (r-spatstat): Update to 2.1-0.
2021-04-08 03:10:12 +02:00
3069514325
gnu: r-spatstat-linnet: Update to 2.1-1.
...
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.1-1.
2021-04-08 03:10:11 +02:00
Leo Famulari
Maxim Cournoyer
Ricardo Wurmus
Mathieu Othacehe
Paul Garlick
Morgan Smith