66071cd85e
gnu: python-pytest-6: Update to 6.2.4 and propagate iniconfig.
...
* gnu/packages/check.scm (python-pytest-6): Update to 6.2.4. Fix typo.
Removing trailing #t.
[native-inputs]: Delete the extraneous python-mock input.
Move python-iniconfig to...
[propagated-inputs]: ... here.
2021-08-29 01:05:27 -04:00
97a675df1b
gnu: Add python-pyspnego.
...
* gnu/packages/python-xyz.scm (python-pyspnego): New variable.
2021-08-29 01:05:27 -04:00
5abe149b4e
gnu: Add python-ncclient.
...
* gnu/packages/python-xyz.scm (python-ncclient): New variable.
2021-08-29 01:05:27 -04:00
165cbdfdc1
gnu: Add python-resolvelib-0.5.
...
* gnu/packages/python-xyz.scm (python-resolvelib-0.5): New variable.
2021-08-29 01:05:26 -04:00
afcbaadac5
gnu: Add python-resolvelib.
...
* gnu/packages/python-xyz.scm (python-resolvelib): New variable.
2021-08-29 01:05:26 -04:00
bf99f80a16
gnu: Add python-commentjson.
...
* gnu/packages/python-xyz.scm (python-commentjson): New variable.
2021-08-29 01:05:26 -04:00
da4e409483
Migrate to the new 'targets' field of bootloader-configuration.
...
The old 'target' field is deprecated; adjust the sources to use the new
'targets' one instead.
* doc/guix-cookbook.texi<target>: Replace by 'targets'.
* gnu/bootloader/grub.scm: Likewise.
* gnu/installer/parted.scm: Likewise.
* gnu/machine/digital-ocean.scm: Likewise.
* gnu/system/examples/asus-c201.tmpl: Likewise
* gnu/system/examples/bare-bones.tmpl: Likewise
* gnu/system/examples/bare-hurd.tmpl: Likewise
* gnu/system/examples/beaglebone-black.tmpl: Likewise
* gnu/system/examples/desktop.tmpl: Likewise
* gnu/system/examples/docker-image.tmpl: Likewise
* gnu/system/examples/lightweight-desktop.tmpl: Likewise
* gnu/system/examples/vm-image.tmpl: Likewise
* gnu/system/examples/yggdrasil.tmpl: Likewise
* gnu/system/hurd.scm: Likewise
* gnu/system/images/hurd.scm: Likewise
* gnu/system/images/novena.scm: Likewise
* gnu/system/images/pine64.scm: Likewise
* gnu/system/images/pinebook-pro.scm: Likewise
* gnu/system/images/rock64.scm: Likewise
* gnu/system/install.scm: Likewise
* gnu/system/vm.scm: Likewise
* gnu/tests.scm: Likewise
* gnu/tests/ganeti.scm: Likewise
* gnu/tests/install.scm: Likewise
* gnu/tests/nfs.scm: Likewise
* gnu/tests/telephony.scm: Likewise
* tests/boot-parameters.scm: Likewise
* tests/system.scm: Likewise
2021-08-29 01:05:26 -04:00
2ca982ff41
gnu: bootloader: Support multiple targets.
...
Fixes <https://issues.guix.gnu.org/40997 >.
* gnu/bootloader.scm (<bootloader-configuration>): New 'targets' field.
(%bootloader-configuration-target): New procedure.
(bootloader-configuration-target): Add deprecation warning.
(bootloader-configuration-targets): New procedure.
* guix/scripts/system.scm (install): Access targets via
bootloader-configuration-targets.
(perform-action)[bootloader-target]: Remove unused argument and update doc.
Access targets via bootloader-configuration-targets and fix indentation.
(process-action): Access targets via bootloader-configuration-targets.
Do not provide the unused BOOTLOADER-TARGET argument when applying
`perform-action'.
* guix/scripts/system/reconfigure.scm (install-bootloader-program): Rename
DEVICE argument to DEVICES. Adjust doc and comment. Apply `installer' and
`disk-installer' for every DEVICES.
(install-bootloader): Access targets via bootloader-configuration-targets and
rename variable from DEVICE to DEVICES.
* gnu/tests/install.scm: Adjust accordingly.
* tests/guix-system.sh: Likewise.
* gnu/tests/reconfigure.scm (run-install-bootloader-test): Adjust the DEVICES
argument so that it is a list.
* doc/guix.texi: Update doc.
2021-08-29 01:05:26 -04:00
76114232d7
gnu: Add emacs-company-org-block.
...
* gnu/packages/emacs-xyz.scm (emacs-company-org-block): New variable.
2021-08-29 00:52:56 +03:00
1dbed7e098
images: pinebook-pro: Fix the agetty baud rate.
...
* gnu/system/images/pinebook-pro.scm (pinebook-pro-barebones-os): Fix the
agetty baud rate.
2021-08-28 17:47:12 +02:00
63fec9fd6a
gnu: Add lsofgraph.
...
* gnu/packages/admin.scm (lsofgraph): New variable.
2021-08-28 15:58:23 +03:00
75a3413b4e
gnu: mame: Update to 0.235.
...
* gnu/packages/emulators.scm (mame): Update to 0.235.
2021-08-28 11:01:06 +02:00
9c7c3f771c
gnu: python-pyopencl: Update to 2021.2.6.
...
* gnu/packages/opencl.scm (python-pyopencl)[version]: Update to
2021.2.6.
[source]: Point to new git repository.
[#:phases]: Remove unused phases.
[inputs]: Use unversioned opencl-headers.
[propagated-inputs]: Remove unused inputs.
2021-08-27 20:50:56 +02:00
65a5eec0a1
gnu: python-pytools: Update to 2021.2.7.
...
* gnu/packages/opencl.scm (python-pytools)[version]: Update to 2021.2.7.
[propagated-inputs]: Remove unused inputs.
2021-08-27 20:50:56 +02:00
842d27fd20
gnu: Add clpeak.
...
* gnu/packages/benchmark.scm (clpeak): New variable.
2021-08-27 20:50:56 +02:00
4d1157fca7
gnu: ocl-icd: Replace with opencl-icd-loader.
...
ocl-icd’s project page is dead and the source code is unavailable.
* gnu/packages/opencl.scm (ocl-icd): Alias to opencl-icd-loader.
(clinfo)[inputs]: Use opencl-icd-loader.
(beignet)[inputs]: Dito.
(pocl)[inputs]: Dito.
(python-pyopencl)[inputs]: Dito.
* gnu/packages/games.scm (leela-zero)[inputs]: Dito.
* gnu/packages/photo.scm (darktable)[inputs]: Dito.
* gnu/packages/rocm.scm (rocm-opencl-runtime)[inputs]: Dito.
2021-08-27 20:50:56 +02:00
2c6c1f8d91
gnu: Add opencl-icd-loader.
...
* gnu/packages/opencl.scm (opencl-icd-loader): New variable.
2021-08-27 20:50:55 +02:00
d8c63f8771
gnu: clinfo: Update to 3.0.21.02.21 and simplify package.
...
* gnu/packages/opencl.scm (clinfo) [version]: Update to 3.0.21.02.21.
[arguments]: Simplify #:phases by adding make arguments to #:make-flags.
2021-08-27 20:50:55 +02:00
95a86b9bab
gnu: opencl-clhpp: Update to 2.0.15.
...
Note that this version bump removes the deprecated cl.hpp header
interface.
* gnu/packages/opencl.scm (opencl-clhpp): Update to 2.0.15.
[#:configure-flags]: Remove prefix.
2021-08-27 20:50:55 +02:00
ac52d4b95c
gnu: opencl-headers: Update to 2021.06.30 and switch to CMake.
...
* gnu/packages/opencl.scm (opencl-headers)[version]: Update to 2021.06.30.
[build-system]: Switch to CMake.
2021-08-27 20:50:52 +02:00
ad7d478d86
gnu: man-pages: Update to 5.13.
...
* gnu/packages/man.scm (man-pages): Update to 5.13.
2021-08-27 19:30:01 +02:00
7125b0d8a1
gnu: josm: Update to 18118.
...
* gnu/packages/geo.scm (josm): Update to 18118.
[inputs]: Add java-jsr305.
[arguments]<#:phases>{fix-jcs}: Replace ICache.NAME_COMPONENT_DELIMITER with
what it points to (":") because its location changed with jcs3.
2021-08-27 16:36:07 +02:00
c9f6fe2c57
gnu: java-opening-hours-parser: Update to 0.23.0.
...
* gnu/packages/geo.scm (java-opening-hours-parser): Update to 0.23.0.
2021-08-27 16:23:31 +02:00
1e0b984591
gnu: postgresql-9.6: Update to 9.6.23.
...
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.23.
2021-08-27 15:03:08 +03:00
bb418a20ee
gnu: postgresql-10: Update to 10.18.
...
* gnu/packages/databases.scm (postgresql-10): Update to 10.18.
2021-08-27 15:03:08 +03:00
3a58a0ed6a
gnu: postgresql-11: Update to 11.13.
...
* gnu/packages/databases.scm (postgresql-11): Update to 11.13.
2021-08-27 15:03:07 +03:00
5795fbbd0f
gnu: Add python-hmmlearn.
...
* gnu/packages/machine-learning.scm (python-hmmlearn): New variable.
2021-08-27 13:37:30 +02:00
db13eb962f
gnu: Add python-strawc.
...
* gnu/packages/bioinformatics.scm (python-strawc): New variable.
2021-08-27 13:37:29 +02:00
17c765e2e1
gnu: Add r-cytonorm.
...
* gnu/packages/bioinformatics.scm (r-cytonorm): New variable.
2021-08-27 13:37:29 +02:00
63a5090869
gnu: Add r-emdist.
...
* gnu/packages/cran.scm (r-emdist): New variable.
2021-08-27 13:37:29 +02:00
03f86ad65c
gnu: emacs-dash: Update to 2.19.1.
...
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.19.1.
2021-08-27 08:25:19 +02:00
70ec9d87b7
gnu: emacs-auctex: Update to 13.0.14.
...
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.14.
2021-08-27 08:18:32 +02:00
4716d54444
gnu: python-greenlet: Update to 1.1.1.
...
* gnu/packages/python-xyz.scm (python-greenlet): Update to 1.1.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-27 00:33:42 +03:00
0e02ce8d49
gnu: python-pytest-xprocess: Update to 0.18.1.
...
* gnu/packages/check.scm (python-pytest-xprocess): Update to 0.18.1.
[native-inputs]: Add python-setuptools-scm.
[home-page]: Fix linter warning to follow permanent redirect.
Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-26 23:58:24 +03:00
db600ee2c1
gnu: python-pytest-timeout: Update to 1.4.2.
...
* gnu/packages/check.scm (python-pytest-timeout): Update to 1.4.2.
[propagated-inputs]:Add python-pytest-cov.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-26 23:34:05 +03:00
b4d132f98e
gnu: emacs-vertico: Add new phase after unpack.
...
* gnu/packages/emacs-xyz.scm (emacs-vertico)[arguments]<phases>:
After the unpack phase add a move-source-files phase.
2021-08-26 22:02:12 +02:00
399e3ee7b7
gnu: emacs-guix: Update to 0.5.2.5-c9aef52.
...
Fixes <https://bugs.gnu.org/48844 >.
* gnu/packages/emacs-xyz.scm (emacs-guix): Update to c9aef52.
[source]: Use gitlab.
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
2021-08-26 21:52:49 +02:00
f3b9db9ca1
gnu: ccache: Update to 3.4.
...
* gnu/packages/ccache.scm: Update to 3.4.
2021-08-26 21:31:12 +02:00
d1d9206180
gnu: mc: Update to 4.8.27.
...
Switched to direct mirror URI to match SSL certificate issuer
(home page does not provide a download link over secure protocols).
While at it added 'release-monitoing-url property to allow
'generic-html updater to fetch latest version from correct location.
Otherwise the only available updater is 'gnu-ftp (which forces downgrade
to ancient 4.6.1 release).
* gnu/packages/mc.scm (mc): Update to 4.8.27. Explicitly set
release-monitoing-url to up to date location.
2021-08-26 21:18:38 +02:00
4b51d045a8
gnu: colobot: Update to 0.2.0-alpha.
...
* gnu/packages/games.scm (colobot): Update to 0.2.0-alpha.
2021-08-26 16:43:33 +02:00
6becdbdc9b
gnu: nushell: Update to 0.36.0.
...
* gnu/packages/shells.scm (nushell): Update to 0.36.0.
(rust-nu-ansi-term-0.36):
(rust-nu-cli-0.36):
(rust-nu-command-0.36):
(rust-nu-completion-0.36):
(rust-nu-data-0.36):
(rust-nu-engine-0.36):
(rust-nu-errors-0.36):
(rust-nu-json-0.36):
(rust-nu-parser-0.36):
(rust-nu-path-0.36):
(rust-nu-plugin-0.36):
(rust-nu-plugin-binaryview-0.36):
(rust-nu-plugin-chart-0.36):
(rust-nu-plugin-fetch-0.36):
(rust-nu-plugin-from-bson-0.36):
(rust-nu-plugin-from-sqlite-0.36):
(rust-nu-plugin-inc-0.36):
(rust-nu-plugin-match-0.36):
(rust-nu-plugin-post-0.36):
(rust-nu-plugin-ps-0.36):
(rust-nu-plugin-query-json-0.36):
(rust-nu-plugin-s3-0.36):
(rust-nu-plugin-selector-0.36):
(rust-nu-plugin-start-0.36):
(rust-nu-plugin-sys-0.36):
(rust-nu-plugin-textview-0.36):
(rust-nu-plugin-to-bson-0.36):
(rust-nu-plugin-to-sqlite-0.36):
(rust-nu-plugin-tree-0.36):
(rust-nu-plugin-xpath-0.36):
(rust-nu-pretty-hex-0.36):
(rust-nu-protocol-0.36):
(rust-nu-source-0.36):
(rust-nu-stream-0.36):
(rust-nu-table-0.36):
(rust-nu-test-support-0.36):
(rust-nu-value-ext-0.36): Update to 0.36.0.
(rust-nu-serde-0.36): New variable.
2021-08-26 14:25:04 +02:00
99edce2091
gnu: Add rust-zstd-0.9.
...
* gnu/packages/crates-io.scm (rust-zstd-0.9): New variable.
(rust-zstd-0.8): Inherit from above.
2021-08-26 14:25:04 +02:00
37c0f201c2
gnu: rust-zstd-safe-4: Update to 4.1.1+zstd.1.5.0.
...
* gnu/packages/crates-io.scm (rust-zstd-safe-4): Update to 4.1.1+zstd.1.5.0.
2021-08-26 14:25:04 +02:00
5c5176a1e8
gnu: rust-zstd-sys-1: Update to 1.6.1+zstd.1.5.0.
...
* gnu/packages/crates-io.scm (rust-zstd-sys-1): Update to 1.6.1+zstd.1.5.0.
2021-08-26 14:25:03 +02:00
299c5d212e
gnu: Add rust-bigdecimal-rs-0.2.
...
* gnu/packages/crates-io.scm (rust-bigdecimal-rs-0.2): New variable.
2021-08-26 14:25:03 +02:00
e832c3325f
gnu: Add rust-flatbuffers-2.
...
* gnu/packages/crates-io.scm (rust-flatbuffers-2): New variable.
(rust-flatbuffers-0.8): Inherit from above.
2021-08-26 14:25:03 +02:00
eb9ae642d4
gnu: Add rust-jsonpath-lib-0.3.
...
* gnu/packages/crates-io.scm (rust-jsonpath-lib-0.3): New variable.
2021-08-26 14:25:02 +02:00
82637c1aef
gnu: Add rust-polars-0.15.
...
* gnu/packages/crates-io.scm (rust-polars-0.15): New variable.
(rust-polars-0.14): Inherit from above.
2021-08-26 14:25:02 +02:00
4a8e07e326
gnu: Add rust-polars-lazy-0.15.
...
* gnu/packages/crates-io.scm (rust-polars-lazy-0.15): New variable.
(rust-polars-lazy-0.14): Inherit from above.
2021-08-26 14:25:02 +02:00
734aa60424
gnu: Add rust-polars-io-0.15.
...
* gnu/packages/crates-io.scm (rust-polars-io-0.15): New variable.
(rust-polars-io-0.14): Inherit from above.
2021-08-26 14:25:01 +02:00
84479475f6
gnu: Add rust-polars-arrow-0.15.
...
* gnu/packages/crates-io.scm (rust-polars-arrow-0.15): New variable.
(rust-polars-arrow-0.14): Inherit from above.
2021-08-26 14:25:01 +02:00
4bfd6d9b49
gnu: Add rust-polars-core-0.15.
...
* gnu/packages/crates-io.scm (rust-polars-core-0.15): New variable.
(rust-polars-core-0.14): Inherit from above.
2021-08-26 14:25:01 +02:00
4da42edec5
gnu: Add rust-parquet-5.
...
* gnu/packages/crates-io.scm (rust-parquet-5): New variable.
(rust-parquet-4): Inherit from above.
2021-08-26 14:25:00 +02:00
721a18bc78
gnu: Add rust-arrow-5.
...
* gnu/packages/crates-io.scm (rust-arrow-5): New variable.
(rust-arrow-4): Inherit from above.
2021-08-26 14:25:00 +02:00
671aae1178
gnu: Add rust-rustyline-9.
...
* gnu/packages/crates-io.scm (rust-rustyline-9): New variable.
(rust-rustyline-8): Inherit from above.
2021-08-26 14:25:00 +02:00
ec51a9845d
gnu: Add rust-fd-lock-3.
...
* gnu/packages/crates-io.scm (rust-fd-lock-3): New variable.
(rust-fd-lock-2): Inherit from above.
2021-08-26 14:24:59 +02:00
60f6e97dd9
gnu: Add rust-nix-0.22.
...
* gnu/packages/crates-io.scm (rust-nix-0.22): New variable.
(rust-nix-0.21): Inherit from above.
2021-08-26 14:24:59 +02:00
45ad284090
gnu: rust-libc-0.2: Update to 0.2.101.
...
* gnu/packages/crates-io.scm (rust-libc-0.2): Update to 0.2.101.
2021-08-26 14:24:59 +02:00
513f5e5179
gnu: rust-thiserror-1: Update to 1.0.26.
...
* gnu/packages/crates-io.scm (rust-thiserror-1): Update to 1.0.26.
2021-08-26 14:24:58 +02:00
89dab587d6
gnu: rust-thiserror-impl-1: Update to 1.0.26.
...
* gnu/packages/crates-io.scm (rust-thiserror-impl-1): Update to 1.0.26.
2021-08-26 14:24:58 +02:00
03ed20e87b
gnu: Add r-zoib.
...
* gnu/packages/cran.scm (r-zoib): New variable.
2021-08-26 11:46:07 +02:00
71f3255faa
gnu: Add r-zoltr.
...
* gnu/packages/cran.scm (r-zoltr): New variable.
2021-08-26 11:46:03 +02:00
db438e2dff
gnu: Add r-mockery.
...
* gnu/packages/cran.scm (r-mockery): New variable.
2021-08-26 11:45:57 +02:00
bb2eef3bf1
gnu: Add r-webmockr.
...
* gnu/packages/cran.scm (r-webmockr): New variable.
2021-08-26 11:45:52 +02:00
9c4e106383
gnu: Add r-fauxpas.
...
* gnu/packages/cran.scm (r-fauxpas): New variable.
2021-08-26 11:45:47 +02:00
e13de8715f
gnu: Add r-crul.
...
* gnu/packages/cran.scm (r-crul): New variable.
2021-08-26 11:45:42 +02:00
87682c88c8
gnu: Add r-mmwrweek.
...
* gnu/packages/cran.scm (r-mmwrweek): New variable.
2021-08-26 11:45:37 +02:00
4638c52e32
gnu: Add r-zonator.
...
* gnu/packages/cran.scm (r-zonator): New variable.
2021-08-26 11:45:29 +02:00
3d111f1430
gnu: Add r-zonebuilder.
...
* gnu/packages/cran.scm (r-zonebuilder): New variable.
2021-08-26 11:45:24 +02:00
5e3199e37b
gnu: Add r-zooarch.
...
* gnu/packages/cran.scm (r-zooarch): New variable.
2021-08-26 11:45:15 +02:00
1c8a0dbcaf
gnu: r-dismo: Remove commented input.
...
* gnu/packages/cran.scm (r-dismo)[inputs]: Remove commented "java" input.
2021-08-26 11:34:26 +02:00
1c4b1a1f49
gnu: Add r-zooimage.
...
* gnu/packages/cran.scm (r-zooimage): New variable.
2021-08-26 11:25:22 +02:00
9d56788e1c
gnu: Add r-mlearning.
...
* gnu/packages/cran.scm (r-mlearning): New variable.
2021-08-26 11:25:22 +02:00
b28a60c02c
gnu: Add r-filehash.
...
* gnu/packages/cran.scm (r-filehash): New variable.
2021-08-26 11:25:22 +02:00
738a48adb1
gnu: Add r-zoolog.
...
* gnu/packages/cran.scm (r-zoolog): New variable.
2021-08-26 11:25:22 +02:00
7986f5cb3d
gnu: Add r-zoom.
...
* gnu/packages/cran.scm (r-zoom): New variable.
2021-08-26 11:25:22 +02:00
7bc1b5a23d
gnu: Add r-zoomgroupstats.
...
* gnu/packages/cran.scm (r-zoomgroupstats): New variable.
2021-08-26 11:25:22 +02:00
870fb5dc22
gnu: Add r-paws.
...
* gnu/packages/cran.scm (r-paws): New variable.
2021-08-26 11:25:22 +02:00
499ffd579e
gnu: Add r-paws-compute.
...
* gnu/packages/cran.scm (r-paws-compute): New variable.
2021-08-26 11:25:22 +02:00
c6849d2ca2
gnu: Add r-paws-storage.
...
* gnu/packages/cran.scm (r-paws-storage): New variable.
2021-08-26 11:25:21 +02:00
b28cfb83e4
gnu: Add r-paws-database.
...
* gnu/packages/cran.scm (r-paws-database): New variable.
2021-08-26 11:25:21 +02:00
478a889925
gnu: Add r-paws-networking.
...
* gnu/packages/cran.scm (r-paws-networking): New variable.
2021-08-26 11:25:21 +02:00
16cc95c4e9
gnu: Add r-paws-management.
...
* gnu/packages/cran.scm (r-paws-management): New variable.
2021-08-26 11:25:21 +02:00
322290ba13
gnu: Add r-paws-machine-learning.
...
* gnu/packages/cran.scm (r-paws-machine-learning): New variable.
2021-08-26 11:25:21 +02:00
c7b913a535
gnu: Add r-paws-analytics.
...
* gnu/packages/cran.scm (r-paws-analytics): New variable.
2021-08-26 11:25:21 +02:00
10139557f0
gnu: Add r-paws-security-identity.
...
* gnu/packages/cran.scm (r-paws-security-identity): New variable.
2021-08-26 11:25:21 +02:00
6850d222e6
gnu: Add r-paws-application-integration.
...
* gnu/packages/cran.scm (r-paws-application-integration): New variable.
2021-08-26 11:25:21 +02:00
a30b1ff444
gnu: Add r-paws-cost-management.
...
* gnu/packages/cran.scm (r-paws-cost-management): New variable.
2021-08-26 11:25:21 +02:00
e1f7b3e8f9
gnu: Add r-paws-customer-engagement.
...
* gnu/packages/cran.scm (r-paws-customer-engagement): New variable.
2021-08-26 11:25:21 +02:00
add144a0c4
gnu: Add r-paws-common.
...
* gnu/packages/cran.scm (r-paws-common): New variable.
2021-08-26 11:25:21 +02:00
26cc1eafe7
gnu: Add r-zoon.
...
* gnu/packages/cran.scm (r-zoon): New variable.
2021-08-26 11:25:21 +02:00
8b00e70558
gnu: Add r-dismo.
...
* gnu/packages/cran.scm (r-dismo): New variable.
2021-08-26 11:25:21 +02:00
f8c88560db
gnu: Add r-rfigshare.
...
* gnu/packages/cran.scm (r-rfigshare): New variable.
2021-08-26 11:25:21 +02:00
2f00425b4e
gnu: Add r-zra.
...
* gnu/packages/cran.scm (r-zra): New variable.
2021-08-26 11:25:21 +02:00
fac893fa7f
gnu: Add r-zscorer.
...
* gnu/packages/cran.scm (r-zscorer): New variable.
2021-08-26 11:25:20 +02:00
9f120e9150
gnu: Add r-ztpln.
...
* gnu/packages/cran.scm (r-ztpln): New variable.
2021-08-26 11:25:20 +02:00
ed531c6cd9
gnu: Add r-distributionutils.
...
* gnu/packages/cran.scm (r-distributionutils): New variable.
2021-08-26 11:25:20 +02:00
f4cb9563a3
gnu: Add r-ztree.
...
* gnu/packages/cran.scm (r-ztree): New variable.
2021-08-26 11:25:20 +02:00
e5f360aa97
gnu: Add r-zzlite.
...
* gnu/packages/cran.scm (r-zzlite): New variable.
2021-08-26 11:25:20 +02:00
c410001d21
gnu: wireshark: Update to 3.4.8.
...
* gnu/packages/networking.scm (wireshark): Update to 3.4.8.
2021-08-26 10:36:02 +02:00
9483d10494
gnu: emacs-orgit: Update to 1.7.1.
...
* gnu/packages/emacs-xyz.scm (emacs-orgit): Update to 1.7.1.
2021-08-26 10:30:09 +02:00
7ef00db933
gnu: emacs-moody: Update to 0.6.0.
...
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.6.0.
2021-08-26 10:28:55 +02:00
71521c341f
gnu: emacs-keycast: Update to 1.1.1.
...
* gnu/packages/emacs-xyz.scm (emacs-keycast): Update to 1.1.1.
2021-08-26 10:27:50 +02:00
f0b0d67341
gnu: emacs-htmlize: Update to 1.56.
...
* gnu/packages/emacs-xyz.scm (emacs-htmlize): Update to 1.56.
2021-08-26 10:26:42 +02:00
e645194d80
gnu: emacs-envrc: Update to 0.4.
...
* gnu/packages/emacs-xyz.scm (emacs-envrc): Update to 0.4.
[propagated-inputs]: Add emacs-inheritenv.
2021-08-26 10:25:28 +02:00
29b3c0898f
gnu: Add emacs-inheritenv.
...
* gnu/packages/emacs-xyz.scm (emacs-inheritenv): New variable.
2021-08-26 10:25:15 +02:00
20ca345899
gnu: emacs-ebdb: Update to 0.8.2.
...
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.2.
2021-08-26 10:13:45 +02:00
26878cb3d8
gnu: osinfo-db: Update to 20210809.
...
Fixes failures when attempting to download some images in gnome-boxes.
* gnu/packages/virtualization.scm (osinfo-db): Update to 20210809.
2021-08-25 22:00:08 +02:00
49339d2e68
gnu: knot-resolver: Update to 5.4.1.
...
* gnu/packages/dns.scm (knot-resolver): Update to 5.4.1.
2021-08-25 21:54:47 +02:00
08660f7c88
gnu: ungoogled-chromium: Update to 92.0.4515.159-0.8164c91.
...
* gnu/packages/chromium.scm (%chromium-version): Set to 92.0.4515.159.
(%ungoogled-revision): Set to 92.0.4515.159-1-8-g8164c91.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2021-08-25 21:10:23 +02:00
2f16659b40
gnu: Add r-ballgown.
...
* gnu/packages/bioconductor.scm (r-ballgown): New variable.
2021-08-25 12:30:33 +02:00
f66759e0b2
gnu: Add ivar.
...
* gnu/packages/bioinformatics.scm (ivar): New variable.
2021-08-25 11:22:02 +02:00
ae3e6ba506
gnu: atop: Update to 2.6.0.
...
* gnu/packages/admin.scm (atop): Update to 2.6.0.
2021-07-27 12:34:57 -04:00
5422920b9e
gnu: openssl: Update replacement to 1.1.1l [security fixes].
...
* gnu/packages/tls.scm (openssl)[replacement]: Replace with 1.1.1l.
(openssl-1.1.1k): Remove variable.
(openssl-1.1.1l): Add variable.
2021-08-24 22:36:39 +03:00
68b22a8541
gnu: r-delayedmatrixstats: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.2.
2021-08-24 12:28:13 +02:00
26d6db11f0
gnu: r-sparsematrixstats: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.2.
2021-08-24 12:28:13 +02:00
b2316605e2
gnu: r-scuttle: Update to 1.2.1.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.1.
2021-08-24 12:28:13 +02:00
2897ad3178
gnu: r-beachmat: Update to 2.8.1.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.1.
2021-08-24 12:28:13 +02:00
da7e7c9de8
gnu: r-biocset: Update to 1.6.1.
...
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.1.
2021-08-24 12:28:13 +02:00
9ff9a4756d
gnu: r-universalmotif: Update to 1.10.2.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.2.
2021-08-24 12:28:13 +02:00
0022f40462
gnu: r-clusterprofiler: Update to 4.0.4.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.4.
2021-08-24 12:28:13 +02:00
5543456ae9
gnu: r-dose: Update to 3.18.2.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.2.
2021-08-24 12:28:13 +02:00
1c23b99a3c
gnu: r-batchelor: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.8.1.
2021-08-24 12:28:12 +02:00
82d6774757
gnu: r-ggtree: Update to 3.0.3.
...
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.3.
2021-08-24 12:28:12 +02:00
e4ad91eb3e
gnu: r-treeio: Update to 1.16.2.
...
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.16.2.
2021-08-24 12:28:12 +02:00
917f0def66
gnu: r-matrixgenerics: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.2.
2021-08-24 12:28:12 +02:00
3ef4c12a49
gnu: r-chippeakanno: Update to 3.26.3.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.3.
2021-08-24 12:28:12 +02:00
33fedd371a
gnu: r-diffbind: Update to 3.2.5.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.5.
2021-08-24 12:28:12 +02:00
514454cc8f
gnu: r-structuralvariantannotation: Update to 1.8.2.
...
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.2.
[propagated-inputs]: Add r-genomeinfodb, r-iranges, r-s4vectors, and
r-summarizedexperiment.
2021-08-24 12:28:12 +02:00
1920e567a7
gnu: r-rtracklayer: Update to 1.52.1.
...
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.1.
2021-08-24 12:28:12 +02:00
495c50c68d
gnu: r-limma: Update to 3.48.3.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.3.
2021-08-24 12:28:12 +02:00
3277c4e749
gnu: r-genomicfeatures: Update to 1.44.1.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.1.
2021-08-24 12:28:12 +02:00
8df84bedf7
gnu: r-ensembldb: Update to 2.16.4.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.4.
2021-08-24 12:28:12 +02:00
e46cf457bb
gnu: r-biostrings: Update to 2.60.2.
...
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.2.
2021-08-24 12:28:12 +02:00
227579e84a
gnu: r-biomart: Update to 2.48.3.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.3.
2021-08-24 12:28:12 +02:00
2a775745d7
gnu: r-xml: Update to 3.99-0.7.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.7.
2021-08-24 12:28:12 +02:00
871c81d0e6
gnu: r-rsqlite: Update to 2.2.8.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.8.
2021-08-24 12:28:12 +02:00
e626540d41
gnu: r-rmarkdown: Update to 2.10.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.10.
2021-08-24 12:28:12 +02:00
5b7813fd09
gnu: r-readr: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-readr): Update to 2.0.1.
2021-08-24 12:28:11 +02:00
ccdcb67353
gnu: r-r6: Update to 2.5.1.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.5.1.
2021-08-24 12:28:11 +02:00
54b95b640d
gnu: r-survival: Update to 3.2-12.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.2-12.
2021-08-24 12:28:11 +02:00
4f5328854f
gnu: r-keras: Update to 2.6.0.
...
* gnu/packages/cran.scm (r-keras): Update to 2.6.0.
[propagated-inputs]: Add r-ellipsis and r-glue.
2021-08-24 12:28:11 +02:00
33317ba722
gnu: r-tensorflow: Update to 2.6.0.
...
* gnu/packages/cran.scm (r-tensorflow): Update to 2.6.0.
[propagated-inputs]: Remove r-jsonlite; add r-tfautograph.
2021-08-24 12:28:11 +02:00
ed7d8e74e4
gnu: r-opencpu: Update to 2.2.5.
...
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.5.
2021-08-24 12:28:11 +02:00
224cb006f6
gnu: r-vroom: Update to 1.5.4.
...
* gnu/packages/cran.scm (r-vroom): Update to 1.5.4.
2021-08-24 12:28:11 +02:00
18a887b767
gnu: r-textplot: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-textplot): Update to 0.2.0.
2021-08-24 12:28:11 +02:00
36a506586b
gnu: r-rjsonio: Update to 1.3-1.5.
...
* gnu/packages/cran.scm (r-rjsonio): Update to 1.3-1.5.
2021-08-24 12:28:11 +02:00
5f95575b84
gnu: r-english: Update to 1.2-6.
...
* gnu/packages/cran.scm (r-english): Update to 1.2-6.
2021-08-24 12:28:11 +02:00
1df8915a03
gnu: r-mlr3learners: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.0.
[propagated-inputs]: Add r-checkmate.
2021-08-24 12:28:11 +02:00
f6e76ab262
gnu: r-mlr3: Update to 0.12.0.
...
* gnu/packages/cran.scm (r-mlr3): Update to 0.12.0.
[propagated-inputs]: Remove r-digest; add r-future.
2021-08-24 12:28:11 +02:00
7dae9355fd
gnu: r-seurat: Update to 4.0.4.
...
* gnu/packages/cran.scm (r-seurat): Update to 4.0.4.
2021-08-24 12:28:11 +02:00
0887bff472
gnu: r-infer: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-infer): Update to 1.0.0.
[propagated-inputs]: Add r-broom, r-generics, r-patchwork, and r-tidyr.
2021-08-24 12:28:11 +02:00
59bc5db72e
gnu: r-scatterpie: Update to 0.1.7.
...
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.7.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun.
2021-08-24 12:28:11 +02:00
d8cd4468e4
gnu: r-brms: Update to 2.16.0.
...
* gnu/packages/cran.scm (r-brms): Update to 2.16.0.
[propagated-inputs]: Add r-posterior.
2021-08-24 12:28:11 +02:00
8a2f102fb4
gnu: r-rxnat: Update to 1.0.15.
...
* gnu/packages/cran.scm (r-rxnat): Update to 1.0.15.
[propagated-inputs]: Remove r-dplyr.
2021-08-24 12:28:10 +02:00
9480d44b40
gnu: r-rlinsolve: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-rlinsolve): Update to 0.3.2.
2021-08-24 12:28:10 +02:00
01bcea4dcb
gnu: r-rsconnect: Update to 0.8.24.
...
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.24.
2021-08-24 12:28:10 +02:00
50e345f1b1
gnu: r-packrat: Update to 0.7.0.
...
* gnu/packages/cran.scm (r-packrat): Update to 0.7.0.
2021-08-24 12:28:10 +02:00
8804fe4f65
gnu: r-rpf: Update to 1.0.8.
...
* gnu/packages/cran.scm (r-rpf): Update to 1.0.8.
2021-08-24 12:28:10 +02:00
33df0e388e
gnu: r-quanteda: Update to 3.1.0.
...
* gnu/packages/cran.scm (r-quanteda): Update to 3.1.0.
2021-08-24 12:28:10 +02:00
b4b3ffb09e
gnu: r-tree: Update to 1.0-41.
...
* gnu/packages/cran.scm (r-tree): Update to 1.0-41.
2021-08-24 12:28:10 +02:00
0ed48e1314
gnu: r-showtext: Update to 0.9-4.
...
* gnu/packages/cran.scm (r-showtext): Update to 0.9-4.
2021-08-24 12:28:10 +02:00
a6ffecaf7b
gnu: r-sysfonts: Update to 0.8.5.
...
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.5.
2021-08-24 12:28:10 +02:00
6b4e6deea6
gnu: r-terra: Update to 1.3-22.
...
* gnu/packages/cran.scm (r-terra): Update to 1.3-22.
2021-08-24 12:28:10 +02:00
de3e5506da
gnu: r-dae: Update to 3.2-10.
...
* gnu/packages/cran.scm (r-dae): Update to 3.2-10.
2021-08-24 12:28:10 +02:00
ae71a35b9b
gnu: r-ggplotify: Update to 0.0.9.
...
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.9.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
2021-08-24 12:28:10 +02:00
586c5df062
gnu: r-bookdown: Update to 0.23.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.23.
[propagated-inputs]: Add r-jquerylib.
2021-08-24 12:28:10 +02:00
58a8e675ee
gnu: r-future-apply: Update to 1.8.1.
...
* gnu/packages/cran.scm (r-future-apply): Update to 1.8.1.
2021-08-24 12:28:10 +02:00
4a7b76a62b
gnu: r-bigrquery: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-bigrquery): Update to 1.4.0.
[propagated-inputs]: Add r-lifecycle.
2021-08-24 12:28:10 +02:00
22f83fb615
gnu: r-rgl: Update to 0.107.14.
...
* gnu/packages/cran.scm (r-rgl): Update to 0.107.14.
2021-08-24 12:28:09 +02:00
a618f77c95
gnu: r-gert: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-gert): Update to 1.3.2.
2021-08-24 12:28:09 +02:00
bc81012532
gnu: r-emmeans: Update to 1.6.3.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.3.
2021-08-24 12:28:09 +02:00
bd7a0667bf
gnu: r-magick: Update to 2.7.3.
...
* gnu/packages/cran.scm (r-magick): Update to 2.7.3.
2021-08-24 12:28:09 +02:00
16bb0355f2
gnu: r-argparse: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-argparse): Update to 2.0.4.
2021-08-24 12:28:09 +02:00
46439f6d65
gnu: r-insight: Update to 0.14.3.
...
* gnu/packages/cran.scm (r-insight): Update to 0.14.3.
2021-08-24 12:28:09 +02:00
741f619982
gnu: r-rbibutils: Update to 2.2.3.
...
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.3.
2021-08-24 12:28:09 +02:00
c34dd257ee
gnu: r-rgexf: Update to 0.16.2.
...
* gnu/packages/cran.scm (r-rgexf): Update to 0.16.2.
[source]: Simplify snippet.
[arguments]: Remove trailing #t.
2021-08-24 12:28:09 +02:00
5c35a92d4b
gnu: r-later: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-later): Update to 1.3.0.
2021-08-24 12:28:09 +02:00
1b85d11650
gnu: r-tinytex: Update to 0.33.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.33.
2021-08-24 12:28:09 +02:00
b7d47d7715
gnu: r-xfun: Update to 0.25.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.25.
2021-08-24 12:28:09 +02:00
442a26491b
gnu: r-bbmle: Update to 1.0.24.
...
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.24.
[native-inputs]: Add r-knitr.
2021-08-24 12:28:09 +02:00
630491f535
gnu: r-d3r: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-d3r): Update to 1.0.0.
[arguments]: Also replace d3.v7.js.
[native-inputs]: Add d3.v7.js.
2021-08-24 12:28:09 +02:00
d390bf650b
gnu: r-servr: Update to 0.23.
...
* gnu/packages/cran.scm (r-servr): Update to 0.23.
2021-08-24 12:28:09 +02:00
ee5fc0a241
gnu: r-httpuv: Update to 1.6.2.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.2.
[inputs]: Add zlib.
2021-08-24 12:28:09 +02:00
7285c1db53
gnu: r-reprex: Update to 2.0.1.
...
* gnu/packages/cran.scm (r-reprex): Update to 2.0.1.
2021-08-24 12:28:08 +02:00
1eee39454b
gnu: r-ggpmisc: Update to 0.4.2-1.
...
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.2-1.
2021-08-24 12:28:08 +02:00
1a54a0b975
gnu: r-datawizard: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.0.
[native-inputs]: Add r-knitr.
2021-08-24 12:28:08 +02:00
10b152ae15
gnu: r-cachem: Update to 1.0.6.
...
* gnu/packages/cran.scm (r-cachem): Update to 1.0.6.
2021-08-24 12:28:08 +02:00
dc18d10cbc
gnu: Add r-tfautograph.
...
* gnu/packages/cran.scm (r-tfautograph): New variable.
2021-08-24 12:28:08 +02:00
8239f1f8cf
gnu: Add r-posterior.
...
* gnu/packages/cran.scm (r-posterior): New variable.
2021-08-24 12:28:08 +02:00
6ff48c64f1
gnu: Add r-distributional.
...
* gnu/packages/cran.scm (r-distributional): New variable.
2021-08-24 12:28:08 +02:00
ffe8484d9d
gnu: Add r-ggfun.
...
* gnu/packages/cran.scm (r-ggfun): New variable.
2021-08-24 12:28:08 +02:00
cabaa73f70
gnu: Add r-yulab-utils.
...
* gnu/packages/cran.scm (r-yulab-utils): New variable.
2021-08-24 12:28:08 +02:00
14c3871720
gnu: r-with-tests: Update to 4.1.1.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.1.
2021-08-24 12:28:04 +02:00
5552104cd2
gnu: emacs-olivetti: Update to 2.0.2.
...
* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 2.0.2.
2021-08-24 11:14:27 +02:00
1a5c3f1af3
gnu: emacs-org-ref: Update to 2.0.0.
...
* gnu/packages/emacs-xyz.scm (emacs-org-ref): Update to 2.0.0.
2021-08-24 11:10:47 +02:00
f04883d0ba
gnu: bat: Update to 0.18.3.
...
* gnu/packages/rust-apps.scm (bat): Update to 0.18.3.
2021-08-23 15:13:52 +02:00
d6c2fc3729
gnu: python-pygmsh: Update to 7.1.11.
...
*gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.11.
[source](snippet): Re-phrase comment.
2021-08-23 12:39:43 +01:00
efde98a443
gnu: emacs-elfeed-score: Update to 0.8.4.
...
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 0.8.4.
2021-08-23 08:55:58 +02:00
0d3cf065ec
gnu: emacs-org-appear: Update to 0.2.4.
...
* gnu/packages/emacs-xyz.scm (emacs-org-appear): Update to 0.2.4.
2021-08-23 08:54:37 +02:00
Maxim Cournoyer
Oleg Pykhalov
Mathieu Othacehe
Nicolas Goaziou
Lars-Dominik Braun
Tobias Geerinckx-Rice
Clément Lassieur
Efraim Flashner
Ricardo Wurmus
jgart
Alexandr Vityazev
André A. Gomes
Sergei Trofimovich
Andrew Whatson
Simon South
Marius Bakke
Leo Famulari
Paul Garlick