2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27 11:21:13 +01:00
37732212a3
gnu: r-locfit: Update to 1.5-9.4.
...
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
2020-03-27 11:21:13 +01:00
c99880320d
gnu: r-class: Update to 7.3-16.
...
* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
2020-03-27 11:21:13 +01:00
3345157fa6
gnu: r-xgboost: Update to 1.0.0.2.
...
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
2020-03-27 11:21:13 +01:00
76d7ce4f45
gnu: r-rjava: Update to 0.9-12.
...
* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
2020-03-27 11:21:13 +01:00
84b7c4aa17
gnu: r-sf: Update to 0.9-0.
...
* gnu/packages/cran.scm (r-sf): Update to 0.9-0.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
498c887a96
gnu: r-bayestestr: Update to 0.5.3.
...
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
9c189913e9
gnu: r-hdf5r: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
6232a36291
gnu: r-ggally: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
2020-03-27 11:21:13 +01:00
0a76a4e073
gnu: guix-data-service: Update to 0.0.1-19.d1c243f.
...
These changes support the guix-data-service-backup-database and
guix-data-service-create-small-backup scripts. These are shell scripts, so
require coreutils from the build environment at runtime as well as binaries
from postgresql, ephemeralpg and optionally util-linux (for ionice and
renice).
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f.
[arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the
'install phase to wrap all bin files with some inputs as well.
[inputs]: Add util-linux, include ephemeralpg from native-inputs and switch
postgresql for postgresql-11.
[native-inputs]: Move ephemeralpg to inputs.
2020-03-26 22:51:36 +00:00
01d5f2c5cd
gnu: Add python-json5.
...
* gnu/packages/python-xyz.scm (python-json5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
aefcfecd84
gnu: Add python-pytest-check-links.
...
* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
be6520e6a5
vm: Distinguish between success and failure of the guest code.
...
Fixes <https://bugs.gnu.org/34276 >.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.
* gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]:
Produce '/xchg/.exit-status' file upon success.
* gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status'
once QEMU has completed and respond accordingly.
2020-03-26 23:45:41 +01:00
60eee3e6de
gnu: Add ROPgadget.
...
* gnu/packages/cybersecurity.scm: New file.
(ropgadget): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
2020-03-26 22:53:02 +01:00
eebaed2b76
gnu: java-tomcat: Update to 8.5.53.
...
This fixes CVE-2020-1938 ("Ghostcat").
* gnu/packages/web.scm (java-tomcat): Update to 8.5.53.
[properties]: Add cpe-name.
2020-03-26 21:39:49 +01:00
3089b70d76
gnu: icu4c: Explicitly add patch flags in replacement package.
...
This is to prevent a build failure when this gets merged to 'core-updates'
which does not have any patch-flags to inherit.
* gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
2020-03-26 21:15:08 +01:00
9ea9ff6b0f
gnu: help2man: Update to 1.47.13.
...
* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
2020-03-26 20:20:48 +01:00
9b0c95cc68
gnu: Add python-pywinrm.
...
* gnu/packages/python-xyz.scm (python-pywinrm): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
c596359729
gnu: Add python-requests_ntlm.
...
* gnu/packages/python-web.scm (python-requests_ntlm): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
163997c961
gnu: Add python-ntlm-auth.
...
* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
f8dcdf2b36
gnu: Add python-kerberos.
...
* gnu/packages/python-crypto.scm (python-kerberos): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
79c395dde3
gnu: Update sambamba to 0.7.1.
...
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1;
Remove unneeded undead input.
2020-03-26 18:08:27 +01:00
db47adb0c7
gnu: Add 7kaa.
...
* gnu/packages/games.scm (7kaa): New variable.
2020-03-26 15:55:02 +01:00
50e45d8629
gnu: boinc-client: Update to 7.16.5.
...
* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
2020-03-26 14:08:24 +02:00
f87d594238
gnu: boinc-server: Fix build.
...
* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl
with openssl-1.0, mariadb with mariadb:dev.
2020-03-26 14:08:24 +02:00
c7af9d0b5e
gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default.
...
Fixes <https://bugs.gnu.org/24076 >.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.
* gnu/packages/patches/gnupg-default-pinentry.patch: New file.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-03-26 13:07:19 +01:00
315b98b9eb
gnu: youtube-viewer: Don't build gtk3 front-end.
...
* gnu/packages/video.scm (youtube-viewer)[arguments]: Update
module-build-flags to only build gtk2 front-end.
2020-03-26 12:56:10 +02:00
b5a26299f7
gnu: youtube-viewer: Update to 3.7.5.
...
* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5.
[inputs]: Add perl-json-xs.
2020-03-26 12:56:07 +02:00
b03ebdbc7c
tests: install: Add %test-gui-installed-desktop-os-encrypted.
...
* gnu/tests/install.scm (gui-test-program): Add a desktop? argument, and pass it to choose-services,
(installation-target-os-for-gui-tests): new procedure,
(installation-target-desktop-os-for-gui-tests): new procedure,
(guided-installation-test): add target-os and desktop? arguments. Use
target-os instead of the previous os variable. Pass desktop? argument to
gui-test-program.
(%test-gui-installed-os): Adapt accordingly,
(%test-gui-installed-os-encrypted): ditto,
(%test-gui-installed-desktop-os-encrypted): new exported variable.
2020-03-26 11:53:50 +01:00
7a1a10dbd4
installer: tests: Use a filter to select desktop-environments.
...
* gnu/installer/tests.scm (choose-services): Turn desktop-environments list
into a choose-desktop-environment procedure. This way, it is easier to select
all desktop-environments or none, in the same way as choose-network-service?
and choose-network-management-tool? arguments.
2020-03-26 11:53:50 +01:00
62c27e09f0
gnu: emacs-helm-exwm: Update to 0.0.2.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
2020-03-26 09:00:46 +01:00
90fb592321
gnu: r-argon2: Fix case in synopsis and use full sentence in description.
...
* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case.
[description]: Use full sentence.
2020-03-26 08:28:53 +01:00
5c3902a762
gnu: r-getpass: Change case in synopsis and adjust indentation.
...
* gnu/packages/cran.scm (r-getpass): Adjust indentation.
[synopsis]: Do not capitalize all words.
2020-03-26 08:28:53 +01:00
f03e62c12d
gnu: r-remoter: Fix indentation.
...
* gnu/packages/cran.scm (r-remoter): Fix indentation.
2020-03-26 08:28:53 +01:00
9bde1b1348
gnu: r-remoter: Use lower case in the synopsis.
...
* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words.
2020-03-26 08:28:41 +01:00
730a4b10fa
gnu: linux-libre-5.4-source: Add patch to support pinebook pro.
...
* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/linux (linux-libre-5.4-source): Add patch.
2020-03-25 18:59:25 -07:00
2a57b72251
gnu: linux-libre: Update deblob scripts.
...
* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28.
2020-03-25 20:39:05 -04:00
5cc6271d22
gnu: linux-libre: Update to 5.4.28.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28.
(linux-libre-5.4-pristine-source): Update hash.
2020-03-25 20:37:38 -04:00
1d777c7837
gnu: linux-libre@4.19: Update to 4.19.113.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113.
(linux-libre-4.19-pristine-source): Update hash.
2020-03-25 20:36:25 -04:00
7d57a190f6
gnu: icu4c: Fix CVE-2020-10531.
...
* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c/fixed): New variable.
2020-03-25 17:53:59 -04:00
0c549393b9
gnu: Add r-remoter.
...
* gnu/packages/cran.scm (r-remoter): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:46:02 -04:00
6ad80b2a6b
gnu: Add r-getpass.
...
* gnu/packages/cran.scm (r-getpass): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:46:02 -04:00
49a8ef8ae1
gnu: Add r-argon2.
...
* gnu/packages/cran.scm (r-argon2): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:45:54 -04:00
0557618dbe
gnu: Add emacs-chronometrist.
...
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): New variable.
2020-03-25 17:34:38 +01:00
8b19fa51a4
gnu: abseil-cpp: Update to 20200225.1.
...
* gnu/packages/cpp.scm (abseil-cpp): Update to 20200225.1.
2020-03-25 16:29:26 +01:00
98e9ed8a3f
gnu: gnu-pw-mgr: Build reproducibly.
...
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr)[native-inputs]: Remove
AUTOGEN so that man pages are not regenerated with a fresh date.
2020-03-25 16:02:53 +01:00
eb019af8d8
tests/nfs: Fix use of WAIT-FOR-FILE.
...
* gnu/tests/nfs.scm ("nfs services are running"): Pass marionette to
WAIT-FOR-FILE.
2020-03-25 14:17:24 +01:00
b3c083b985
services/nfs: Mount nfsd pseudo file system.
...
* gnu/services/nfs.scm (nfs-shepherd-services): Add shepherd-service providing
/proc/fs/nfsd and make other shepherd services require it.
2020-03-25 14:17:24 +01:00
620c756443
gnu: electron-cash: Update to 4.0.14.
...
* gnu/packages/finance.scm (electron-cash): Update to 4.0.14.
2020-03-25 11:09:45 +01:00
2fcd2e1a5f
gnu: r-shiny: Add missing inputs.
...
* gnu/packages/cran.scm (r-shiny)[propagated-inputs]: Add r-later, r-promises,
r-rlang, and r-withr.
[native-inputs]: Add gfortran.
2020-03-25 09:40:05 +01:00
Ricardo Wurmus
Christopher Baines
Lars-Dominik Braun
Ludovic Courtès
Jakub Kądziołka
Björn Höfling
Marius Bakke
Alexandros Theodotou
Roel Janssen
Naga Malleswari
Efraim Flashner
Mathieu Othacehe
Pierre Neidhardt
Vagrant Cascadian
Mark H Weaver
Leo Famulari
Todor Kondić
Nicolas Goaziou
Guillaume Le Vaillant