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93772 Commits (2bff47092002ab2d6e4fd4961a79a25a4343ae45)

Author SHA1 Message Date
Guillaume Le Vaillant 1ea1fa96fe
gnu: Add ndppd.
* gnu/packages/admin.scm (ndppd): New variable.
2022-10-29 13:58:45 +02:00
Nicolas Goaziou db3c80e8ab
gnu: emacs-nano-modeline: Update to 0.7.2.
* gnu/packages/emacs-xyz.scm (emacs-nano-modeline): Update to 0.7.2.
2022-10-29 10:46:21 +02:00
Christopher Baines e4fcb6d1b3
gnu: guix-build-coordinator: Update to 0-68.3768aec.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-68.3768aec.
2022-10-29 09:37:43 +01:00
Christopher Baines 067deee14f
gnu: bzip2: Fix script interpreters when cross-compiling.
Add bash-minimal as an input fixes the interpreters for various scripts (like
bzdiff and bzgrep) when cross-compiling.

* gnu/packages/compression.scm (bzip2)[inputs]: Add bash-minimal when cross
compiling.
2022-10-29 09:29:32 +01:00
Christopher Baines a0c5f19dc6
gnu: xz: Fix script interpreters when cross-compiling.
Add bash-minimal as an input fixes the interpreters for various scripts (like
xzgrep and xzless) when cross-compiling.

* gnu/packages/compression.scm (xz)[inputs]: Add bash-minimal when cross
compiling.
2022-10-29 09:29:32 +01:00
Christopher Baines 01cfc22700
gnu: gzip: Fix script interpreters when cross-compiling.
Add bash-minimal as an input fixes the interpreters for various scripts (like
zcat and zless) when cross-compiling.

* gnu/packages/compression.scm (gzip)[inputs]: Add bash-minimal when cross
compiling.
2022-10-29 09:29:31 +01:00
Christopher Baines 42c8315316
gnu: gnome-control-center: Update to 42.4.
* gnu/packages/gnome.scm (gnome-control-center): Update to 42.4.
2022-10-29 09:28:11 +01:00
Danny Milosavljevic 0a604c16b3
gnu: Add seer-gdb.
* gnu/packages/debug.scm (seer-gdb): New variable.
2022-10-28 21:55:39 +02:00
Vagrant Cascadian ed70f80ccd
gnu: texlive-latex-atveryend: Fix typo.
* gnu/packages/tex.scm (texlive-latex-atveryend)[description]: Fix incorrectly
  pluralized use of "package".
2022-10-28 11:51:00 -07:00
Ricardo Wurmus b669735356
gnu: python-rpy2: Update to 3.5.5.
* gnu/packages/statistics.scm (python-rpy2): Update to 3.5.5.
[arguments]: Run all tests; run them conditionally.
2022-10-28 20:40:47 +02:00
Christopher Baines 7797570479
gnu: sed: Skip failing test on GNU/Hurd.
* gnu/packages/base.scm (sed)[arguments]: Add #:make-flags.
2022-10-28 15:16:54 +01:00
Christopher Baines 2a152e1a42
gnu: diffutils: Skip failing test on GNU/Hurd.
* gnu/packages/base.scm (diffutils)[arguments]: Add #:make-flags.
* gnu/packages/commencement.scm (diffutils-boot0)[arguments]: Adjust to always
use substitute-keyword-arguments.
2022-10-28 15:16:54 +01:00
Mădălin Ionel Patrașcu fe20121dc7
gnu: Add r-damefinder.
* gnu/packages/bioconductor.scm (r-damefinder): New variable.
2022-10-28 15:11:29 +02:00
Mădălin Ionel Patrașcu 812cbd9321
gnu: Add r-dama.
* gnu/packages/bioconductor.scm (r-dama): New variable.
2022-10-28 15:08:58 +02:00
Ricardo Wurmus 77a81280b2
gnu: Add ghc-6.6.
* gnu/packages/haskell.scm (ghc-6.6): New variable.
2022-10-28 15:00:21 +02:00
Ricardo Wurmus 171b729005
gnu: ghc-6.0: Adjust configuration.
* gnu/packages/haskell.scm (ghc-6.0)[arguments]: Pass --enable-src-tree-happy
option; remove --with-hc option because we use the same GHC for everything;
add --with-gcc option to embed absolute file name of GCC.
[native-inputs]: Remove unused python-2.
2022-10-28 15:00:21 +02:00
Ricardo Wurmus 65ad002ff1
gnu: ghc-4: Embed absolute file name of GCC in GHC.
* gnu/packages/haskell.scm (ghc-4)[arguments]: Pass "--with-gcc" option to
configure script.
2022-10-28 15:00:21 +02:00
Ricardo Wurmus 75b24abf09
gnu: flair: Update to 1.6.4.
* gnu/packages/bioinformatics.scm (flair): Update to 1.6.4.
[propagated-inputs]: Add python-numpy and python-scipy.
2022-10-28 15:00:21 +02:00
Ricardo Wurmus bb4f24b3ae
gnu: flair: Set R_HOME.
* gnu/packages/bioinformatics.scm (flair)[arguments]: Set R_HOME.
2022-10-28 15:00:21 +02:00
Ricardo Wurmus 28950ed561
gnu: flair: Add missing R package.
* gnu/packages/bioinformatics.scm (flair)[inputs]: Add r-apeglm.
2022-10-28 15:00:20 +02:00
Mădălin Ionel Patrașcu 917b96cef7
gnu: Add r-debcam.
* gnu/packages/bioconductor.scm (r-debcam): New variable.
2022-10-28 15:00:20 +02:00
Mădălin Ionel Patrașcu 0d713c865b
gnu: Add r-dmwr2.
* gnu/packages/cran.scm (r-dmwr2): New variable.
2022-10-28 15:00:16 +02:00
Nicolas Goaziou 7d92434326
gnu: emacs-modus-themes: Update to 3.0.0.
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 3.0.0.
2022-10-28 11:16:08 +02:00
Nicolas Goaziou 575790f5f5
gnu: emacs-ediprolog: Update to 2.2.
* gnu/packages/emacs-xyz.scm (emacs-ediprolog): Update to 2.2.
2022-10-28 11:16:07 +02:00
Nicolas Goaziou a31c653cb1
gnu: emacs-subed: Update to 1.0.16.
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.16.
2022-10-28 11:16:07 +02:00
Nicolas Goaziou 8b204f4e94
gnu: emacs-mmm-mode: Update to 0.5.9.
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.9.
2022-10-28 11:16:07 +02:00
Nicolas Goaziou 5b86417d91
gnu: emacs-ement: Update to 0.4.1.
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.4.1.
2022-10-28 11:16:06 +02:00
Lars-Dominik Braun 652c5d8a01
gnu: r-mixedpower: Fix faulty commit.
Fix previous commit, which did not contain the following changes:

* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r-mixedpower)[source]: Use it.
2022-10-28 10:17:55 +02:00
Jonathan Brielmaier 328fa8b290
gnu: icedove: Update to 102.4.1.
* gnu/packages/gnuzilla.scm (%icedove-build-id, %icedove-version) Update to 102.4.1.
2022-10-28 10:02:35 +02:00
Lars-Dominik Braun 332568d3e8
gnu: r-mixedpower: Improve compatibility with R>=4.2.
Upstream’s fix is incomplete and thus commit
7871447cf5 was insufficient.

* gnu/packages/patches/r-mixedpower-r2power.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r-mixedpower)[source]: Use it.
2022-10-28 09:59:11 +02:00
Maxim Cournoyer 3511ad2857
gnu: rottlog: Apply patch adding a Texinfo direntry.
Relates to <https://issues.guix.gnu.org/58821>.

* gnu/packages/patches/rottlog-direntry.patch: Add patch.
* gnu/packages/admin.scm (rottlog): Apply it.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-10-27 23:34:46 -04:00
Maxim Cournoyer ff097b450b
gnu: rottlog: Use gexps and bootstrap Autotools build system.
* gnu/packages/admin.scm (rottlog) [snippet]: Delete build system files.
Delete trailing #t.  Patch Makefile.am instead of Makefile.in.  Do not patch
INSTALL_RC and INSTALL_SCRIPT variables default values.
[arguments]: Use gexps.  Delete trailing #t.
[make-flags]: Override INSTALL_RC and INSTALL_SCRIPT.
[phases]{fix-configure}: Delete phase.
[native-inputs]: Add autoconf.  Sort inputs.
2022-10-27 23:34:46 -04:00
Leo Famulari e04baf43ab
gnu: linux-libre: Update to 5.19.17.
* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.17.
(linux-libre-5.19-pristine-source): Update hash.
2022-10-27 21:02:02 -04:00
Ludovic Courtès d520fdec3c
gnu: findutils: Skip failing test on GNU/Hurd.
* gnu/packages/base.scm (findutils)[arguments]: Add #:make-flags.
* gnu/packages/commencement.scm (findutils-boot0)[arguments]: Likewise.
2022-10-28 01:27:22 +02:00
Ludovic Courtès 6c16eb24d1
gnu: grep: Skip failing tests on GNU/Hurd.
* gnu/packages/base.scm (grep)[arguments]: Add #:make-flags.
2022-10-28 01:27:22 +02:00
Ludovic Courtès 842b73fd2b
gnu: coreutils: Skip failing tests on GNU/Hurd.
* gnu/packages/base.scm (coreutils)[arguments]: Add
"tests/df/unreadable.sh" and "test-perror2" to the 'XFAIL_TESTS' list.
2022-10-28 01:27:21 +02:00
Vagrant Cascadian ac51b9c86d
gnu: swftools: Fix typos.
* gnu/packages/animation.scm (swftools)[description]: Avoid uses of "allows
  to".
2022-10-27 14:13:17 -07:00
Marius Bakke f8ce707252
gnu: pypy: Remove unused module imports.
This is a follow-up to commit 6e7ed04033.

* gnu/packages/pypy.scm: Remove unused modules.
2022-10-27 21:38:56 +02:00
Marius Bakke e944734ef9
build-system/pyproject: Always run tests verbosely for supported backends.
* guix/build-system/pyproject.scm (pyproject-build): Default to '() instead of
 #false for TEST-FLAGS.
* guix/build/pyproject-build-system.scm (check): Unconditionally enable
verbose test flags.
* doc/guix.texi (Build Systems): Document this change.
* gnu/packages/fontutils.scm (python-glyphslib)[arguments]: Remove verbosity
from #:test-flags.
* gnu/packages/pdf.scm (python-pydyf, weasyprint)[arguments]: Likewise.
* gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]: Likewise.
* gnu/packages/python-xyz.scm (python-path, python-tempora)[arguments]: Likewise.
2022-10-27 21:30:03 +02:00
Marius Bakke f928abac36
gnu: python-deepmerge: Use pyproject-build-system.
* gnu/packages/python-xyz.scm (python-deepmerge)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:08 +02:00
Marius Bakke 7b83b3a77c
gnu: python-scikit-build: Switch to pyproject-build-system.
* gnu/packages/python-xyz.scm (python-scikit-build)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:08 +02:00
Marius Bakke 9ffbcb8a06
gnu: python-cattrs: Use pyproject-build-system.
* gnu/packages/python-xyz.scm (python-cattrs)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
Marius Bakke d2e88c383b
gnu: python-path: Use pyproject-build-system.
* gnu/packages/python-xyz.scm (python-path-bootstrap)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
(python-path): Remove #:phases.  Add #:test-flags.
2022-10-27 19:43:08 +02:00
Marius Bakke 5e17453f18
gnu: python-openapi-spec-validator: Use pyproject-build-system.
* gnu/packages/python-web.scm (python-openapi-spec-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags.  Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
Marius Bakke 3c685772de
gnu: python-openapi-schema-validator: Use pyproject-build-system.
* gnu/packages/python-web.scm (python-openapi-schema-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
Marius Bakke 7b499ef116
gnu: zabbix-cli: Switch to pyproject-build-system.
* gnu/packages/monitoring.scm (zabbix-cli)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove check phase.
2022-10-27 19:43:08 +02:00
Marius Bakke e05e2a7a75
gnu: python-pygmsh: Use pyproject-build-system.
* gnu/packages/simulation.scm (python-pygmsh)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
Marius Bakke b8efe89eb4
gnu: python-tempora: Switch to pyproject-build-system.
* gnu/packages/python-xyz.scm (python-tempora)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags.  Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
Marius Bakke 8bdc4c1547
gnu: python-mypy-protobuf: Switch to pyproject-build-system.
* gnu/packages/protobuf.scm (python-mypy-protobuf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
Marius Bakke eecc807ea4
gnu: python-ufolib2: Use pyproject-build-system.
* gnu/packages/fontutils.scm (python-ufolib2)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:07 +02:00
Marius Bakke 10f8534929
gnu: python-statmake: Use pyproject-build-system.
* gnu/packages/fontutils.scm (python-statmake)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
Marius Bakke 6f6257a6bc
gnu: python-glyphslib: Use pyproject-build-system.
* gnu/packages/fontutils.scm (python-glyphslib)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags.  Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:07 +02:00
Marius Bakke df095a1813
gnu: weasyprint: Use pyproject-build-system.
* gnu/packages/pdf.scm (weasyprint)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.  Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
Marius Bakke 4c8e0b3274
gnu: python-pydyf: Use pyproject-build-system.
* gnu/packages/pdf.scm (python-pydyf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases.  Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
Marius Bakke ee1f51011c
gnu: python-autopage: Use pyproject-build-system.
* gnu/packages/python-xyz.scm (python-autopage)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
2022-10-27 19:43:07 +02:00
Lars-Dominik Braun 400a7a4c80
build-system: Add pyproject-build-system.
This is an experimental build system based on python-build-system
that implements PEP 517-compliant builds.

* doc/guix.texi (Build Systems): Add pyproject-build-system section.
* doc/contributing.texi (Python Modules): Mention pyproject.toml and the
PYTHON-TOOLCHAIN package, as well as differences to python-build-system.
* guix/build-system/pyproject.scm,
guix/build/pyproject-build-system.scm,
gnu/packages/aux-files/python/sanity-check-next.py,
gnu/packages/python-commencement.scm: New files.
* Makefile.am (MODULES): Register the new build systems.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add python-commencement.scm.
* gnu/packages/python.scm (python-sans-pip, python-sans-pip-wrapper): New
variables.

Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
Marius Bakke b4e2effb30
gnu: python-pip: Move to (gnu packages python-build).
* gnu/packages/python-xyz.scm (python-pip): Move from here ...
* gnu/packages/python-build.scm (python-pip): ... to here.
2022-10-27 19:43:06 +02:00
Lars-Dominik Braun 6e7ed04033
gnu: pypy: Move to separate module.
This removes the need to import (gnu packages python-xyz) in (gnu packages
python), avoiding issues with circular imports.

* gnu/packages/python.scm (pypy): Move…
* gnu/packages/pypy.scm (pypy): …here
* gnu/local.mk: Register new file.

Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
Lars-Dominik Braun c485a9d8af
gnu: python-setuptools: Move to python-build.
* gnu/packages/python-xyz.scm (python-setuptools): Move…
* gnu/packages/python-build.scm: …here.
* gnu/packages/chemistry.scm,
gnu/packages/messaging.scm,
gnu/packages/sequoia.scm,
tests/lint.scm: Adjust module imports accordingly.

Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
Marius Bakke cae327a3b0
gnu: Zabbix: Update to 6.0.9.
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.9.
2022-10-27 19:43:06 +02:00
Marius Bakke 593548f063
gnu: zabbix-agentd: Enable TLS support.
* gnu/packages/monitoring.scm (zabbix-agentd)[arguments]: Pass "--with-gnutls"
in #:configure-flags.
[inputs]: Add GNUTLS.
(zabbix-server): Inherit these changes.
2022-10-27 19:43:06 +02:00
Ricardo Wurmus 176a501360
gnu: flair: Add missing R packages.
* gnu/packages/bioinformatics.scm (flair)[propagated-inputs]: Add python-rpy2.
[inputs]: Add r-minimal, r-deseq2, r-drimseq, r-ggplot2, r-lazyeval, r-qqman,
and r-rlang.
[arguments]: Add phase "wrap-executable".
2022-10-27 18:21:22 +02:00
Nicolas Goaziou 302eae2fc3
gnu: emacs-buttercup: Update to 1.28.
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.28.
2022-10-27 17:37:40 +02:00
Mădălin Ionel Patrașcu aef2425666
gnu: Add r-aseb.
* gnu/packages/bioconductor.scm (r-aseb): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu 695d7720ef
gnu: Add r-asgsca.
* gnu/packages/bioconductor.scm (r-asgsca): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu b8b91756ab
gnu: Add r-aspli.
* gnu/packages/bioconductor.scm (r-aspli): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu a8e0069f87
gnu: Add r-assessorf.
* gnu/packages/bioconductor.scm (r-assessorf): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu f1750236c1
gnu: Add r-asset.
* gnu/packages/bioconductor.scm (r-asset): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu c0278aa51e
gnu: Add r-atena.
* gnu/packages/bioconductor.scm (r-atena): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu 70d30096b3
gnu: Add r-atsnp.
* gnu/packages/bioconductor.scm (r-atsnp): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu 599655dc49
gnu: Add r-attract.
* gnu/packages/bioconductor.scm (r-attract): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu 3f755098cb
gnu: Add r-awfisher.
* gnu/packages/bioconductor.scm (r-awfisher): New variable.
2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu 930b1e0458
gnu: Add r-awst.
* gnu/packages/bioconductor.scm (r-awst): New variable.
2022-10-27 16:40:18 +02:00
Marius Bakke d9686315bd
gnu: ungoogled-chromium: Update to 107.0.5304.68-1.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M107.
(%chromium-version): Set to 107.0.5304.68.
(%ungoogled-origin): Update hash.
(%chromium-gcc-patchset, gcc-patch): Remove.
(%gcc-patches): Empty list.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Add clang_base_path and use_system_libwayland_server to
 #:configure-flags.  Adjust substitutions.
[inputs]: Add QTBASE-5.
2022-10-27 16:15:09 +02:00
Mădălin Ionel Patrașcu 38cc09493c
gnu: Add r-barcodetrackr.
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
2022-10-27 15:58:45 +02:00
Mădălin Ionel Patrașcu 01944e0eb8
gnu: Add r-banocc.
* gnu/packages/bioconductor.scm (r-banocc): New variable.
2022-10-27 15:57:30 +02:00
Mădălin Ionel Patrașcu fe2be9c0cf
gnu: Add r-bandits.
* gnu/packages/bioconductor.scm (r-bandits): New variable.
2022-10-27 15:56:40 +02:00
Mădălin Ionel Patrașcu 9b337c2735
gnu: Add r-bambu.
* gnu/packages/bioconductor.scm (r-bambu): New variable.
2022-10-27 15:51:55 +02:00
Mădălin Ionel Patrașcu f0d0b6a0c5
gnu: Add r-badregionfinder.
* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
2022-10-27 15:50:33 +02:00
Mădălin Ionel Patrașcu c969517cec
gnu: Add r-bader.
* gnu/packages/bioconductor.scm (r-bader): New variable.
2022-10-27 15:35:22 +02:00
Mădălin Ionel Patrașcu 0ad89a84c3
gnu: Add r-bac.
* gnu/packages/bioconductor.scm (r-bac): New variable.
2022-10-27 15:34:01 +02:00
Mădălin Ionel Patrașcu f31b494bb6
gnu: Add r-basespacer.
* gnu/packages/bioconductor.scm (r-basespacer): New variable.
2022-10-27 15:30:25 +02:00
Mădălin Ionel Patrașcu 3417a28080
gnu: Add r-eulerr.
* gnu/packages/cran.scm (r-eulerr): New variable.
2022-10-27 15:28:22 +02:00
Mădălin Ionel Patrașcu 9f8ab16fb5
gnu: Add r-tximportdata.
* gnu/packages/bioconductor.scm (r-tximportdata): New variable.
2022-10-27 15:24:06 +02:00
Mădălin Ionel Patrașcu f180a5990b
gnu: Add r-fishpond.
* gnu/packages/bioconductor.scm (r-fishpond): New variable.
2022-10-27 15:19:36 +02:00
Mădălin Ionel Patrașcu fe7b421d05
gnu: Add python-multivelo.
* gnu/packages/bioinformatics.scm (python-multivelo): New variable.
2022-10-27 15:15:19 +02:00
Hong.Li@mdc-berlin.de 358a1fdf7b
gnu: Add r-seuratwrappers.
* gnu/packages/bioinformatics.scm (r-seuratwrappers): New variable.
2022-10-27 15:03:21 +02:00
Ricardo Wurmus 87763421a9
gnu: r-seurat: Update to 4.2.0.
* gnu/packages/cran.scm (r-seurat): Update to 4.2.0.
2022-10-27 15:03:21 +02:00
Ricardo Wurmus 1cc12eace3
gnu: r-seuratobject: Update to 4.1.2.
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.2.
2022-10-27 15:03:21 +02:00
Mădălin Ionel Patrașcu 4b9fa56cad
gnu: Add r-baalchip.
* gnu/packages/bioconductor.scm (r-baalchip): New variable.
2022-10-27 13:54:18 +02:00
Mădălin Ionel Patrașcu 8e6a9b23d0
gnu: Add python-jupytext.
* gnu/packages/python-xyz.scm (python-jupytext): New variable.
2022-10-27 13:25:15 +02:00
Mădălin Ionel Patrașcu c28598db5b
gnu: Add python-mdit-py-plugins.
* gnu/packages/python-xyz.scm (python-mdit-py-plugins): New variable.
2022-10-27 13:25:15 +02:00
Mădălin Ionel Patrașcu 447400c853
gnu: Add python-markdown-it-py.
* gnu/packages/python-xyz.scm (python-markdown-it-py): New variable.
2022-10-27 13:25:15 +02:00
Mădălin Ionel Patrașcu d748d4fd6c
gnu: Add python-mdurl.
* gnu/packages/python-xyz.scm (python-mdurl): New variable.
2022-10-27 13:25:15 +02:00
Ricardo Wurmus be51ee7ced
gnu: Add ghc-6.0.
* gnu/packages/haskell.scm (ghc-6.0): New variable.
2022-10-27 13:25:15 +02:00
Ricardo Wurmus 82791af033
gnu: ghc-4: Build full compiler using provided *.hc files.
* gnu/packages/haskell.scm (ghc-4)[source]: Remove patch.
[arguments]: Change to build full compiler.
[native-inputs]: Remove default binutils and gcc; add tarball for hc files.
* gnu/packages/patches/ghc-4.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-10-27 13:25:15 +02:00
Efraim Flashner bbaf3bcb45
gnu: python-afdko: Skip a test.
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Adjust custom
'check phase to skip a test.
2022-10-27 14:13:52 +03:00
Andrew Tropin 95d44c0586
gnu: Add emacs-clj-refactor.
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): New variable.
2022-10-27 09:27:40 +04:00
Andrew Tropin 39dfa2947f
gnu: Add emacs-inflections.
* gnu/packages/emacs-xyz.scm (emacs-inflections): New variable.
2022-10-27 09:18:53 +04:00
Tobias Geerinckx-Rice 5dda4c69f0
gnu: xorriso: Update to 1.5.4.
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.4.
2022-10-23 02:00:07 +02:00