2fcd2e1a5f
gnu: r-shiny: Add missing inputs.
...
* gnu/packages/cran.scm (r-shiny)[propagated-inputs]: Add r-later, r-promises,
r-rlang, and r-withr.
[native-inputs]: Add gfortran.
2020-03-25 09:40:05 +01:00
51d1a7a2ef
gnu: r-mast: Add r-knitr to native inputs.
...
* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
2020-03-25 09:40:05 +01:00
97b1366d49
gnu: poetry: Update to 1.0.5.
...
* gnu/packages/python-xyz.scm (poetry): Update to 1.0.5.
[propagated-inputs] Add python-clikit, python-importlib-metadata,
python-keyring, and python-pexpect. Remove python-msgpack and python-glob2.
[home-page] Update URL.
[arguments] Remove 'patch-setup-py' phase, and adjust required versions of
keyring, pyrsistent and importlib-metadata.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:16:50 -04:00
c298118860
gnu: python-cachy: Update to 0.3.0.
...
* gnu/packages/python-xyz.scm (python-cachy): Update to 0.3.0.
[arguments]: Replace the 'check' phase.
[native-inputs]: Add memcached and python-pifpaf.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:22 -04:00
f5879f158c
gnu: Add python-pifpaf.
...
* gnu/packages/python-xyz.scm (python-pifpaf): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:22 -04:00
20c9df4e46
gnu: Add python-daiquiri.
...
* gnu/packages/python-xyz.scm (python-daiquiri): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
3b3edfa8e3
gnu: Add python-json-logger.
...
* gnu/packages/python-xyz.scm (python-json-logger): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
f6c784806e
gnu: Add python-xattr.
...
* gnu/packages/python-xyz.scm (python-xattr): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
1655e7be78
gnu: python-fakeredis: Update to 1.2.1.
...
* gnu/packages/databases.scm (python-fakeredis): Update to 1.2.1.
[propagated-inputs]: Add python-sortedcontainers.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
eac978eef8
gnu: python-clikit: Update to 0.4.2.
...
* gnu/packages/python-xyz.scm (python-clikit): Update to 0.4.2.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
01e3044200
gnu: python-sortedcontainers: Add missing propagated-inputs.
...
* gnu/packages/python-xyz.scm (python-sortedcontainers):
[propagated-inputs] Add python-appdirs, python-distlib, python-filelock,
python-importlib-metadata and python-six.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
6dcbd20afa
gnu: python-cachecontrol: Add missing propagated-input.
...
* gnu/packages/python-web.scm (python-cachecontrol):
[propagated-inputs]: Add python-msgpack.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
66ab2f5e3a
gnu: python-msgpack: Update to 1.0.0.
...
* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.0.0.
(python-msgpack-transitional)[version,source]: New fields to avoid updating this
package.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
67c8b6448e
gnu: python-pastel: Update to 0.2.0.
...
* gnu/packages/graphics.scm (python-pastel): Update to 0.2.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
a356d1b68d
gnu: python-jsonschema: Update to 3.2.0.
...
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0.
[propagated-inputs]: Add python-importlib-metadata.
[arguments]: Use add-installed-pythonpath to make a test pass.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
2c15cb5898
gnu: python-pexpect: Update to 4.8.0.
...
* gnu/packages/python-xyz.scm (python-pexpect): Update to 4.8.0.
[arguments]: Disable failing test.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
5e44011bfb
gnu: perl-mail-sendmail: Add line above definition.
...
* gnu/packages/perl.scm (perl-mail-sendmail): Add line.
2020-03-24 20:08:05 +00:00
25022bfd3a
gnu: Add perl-mail-sendmail.
...
* gnu/packages/perl.scm (perl-mail-sendmail): New variable.
2020-03-24 19:59:43 +00:00
57e12aad6d
scripts: lint: Handle store connections for lint checkers.
...
Rather than individual checkers opening up a connection to the store for each
package to check, if any checker requires a store connection, open a
connection and pass it to all checkers that would use it. This makes running
the derivation checker much faster for multiple packages.
* guix/scripts/lint.scm (run-checkers): Add a #:store argument, and pass the
store to checkers if they require a store connection.
(guix-lint): Establish a store connection if any checker requires one, and
pass it through to run-checkers.
2020-03-24 19:47:46 +00:00
7826fbc02b
lint: Add a #:store argument to check-derivation
...
This can then be used to avoid opening up a store connection each time a
package needs checking.
* guix/lint.scm (check-derivation): Add a #:store argument, and pull the
handling of the store connection out of the try function.
2020-03-24 19:47:46 +00:00
d84ad6a24e
lint: Mark the derivation checker as requiring a store connection.
...
* guix/lint.scm (%local-checkers): Mark the derivation checker as requiring a
store connection.
2020-03-24 19:47:46 +00:00
3874dc5ef2
lint: Add a requires-store? field to the checker record.
...
This can then be used to mark checkers that require a store connection, which
will enable passing a connection in, avoiding the overhead of establishing a
connection inside the check function when it's run for lots of different
packages.
* guix/lint.scm (<lint-checker>): Add requires-store? to the record type.
2020-03-24 19:47:43 +00:00
b14c234c0d
gnu: Add Docusign API Python client.
...
* gnu/packages/python-xyz.scm (python-docusign-esign): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 15:36:20 -04:00
be743fc0fd
doc: Document that a working environment for building Guix requires "--pure".
...
* doc/guix.texi (Invoking guix environment): Document that a working
environment for building Guix requires "--pure".
2020-03-24 19:25:25 +01:00
637db76d7a
guix system: Fix mistaken 'guix pull' warning upon 'reconfigure'.
...
Fixes <https://bugs.gnu.org/38196 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* guix/scripts/system.scm (maybe-suggest-running-guix-pull): Check
whether 'current-profile' returns true instead of checking for the
existence of ~root/.config/guix/current. That way, "sudo guix system
reconfigure" no longer emits a warning in that case.
2020-03-24 18:54:41 +01:00
72a5cc5358
gnu: automake: Add version 1.16.2.
...
* gnu/packages/autotools.scm (automake-1.16.2): New variable.
2020-03-24 18:03:18 +01:00
53c594cb3f
pack: Do not store extended attributes in squashfs images.
...
* guix/scripts/pack.scm (squashfs-image)[build](mksquashfs): Pass "-no-xattrs".
2020-03-24 16:56:19 +01:00
8465f1f680
ui: 'show-manifest-transaction' tabulates package lists for install/remove.
...
It also removes the store file name from the output.
* guix/ui.scm (show-manifest-transaction)[package-strings]: Rewrite to
use 'tabulate'. Remove 'item' parameter and adjust callers.
2020-03-24 15:44:45 +01:00
3e5ab0a7a9
ui: 'show-manifest-transaction' tabulates upgraded package lists.
...
This also changes "1.0.0 → 1.0.0" to "(dependencies changed)", which is
probably less confusing.
* guix/ui.scm (tabulate): New procedure.
(show-manifest-transaction)[upgrade-string]: Rewrite to take lists of
names, versions, and outputs instead of single elements. Use
'tabulate'. Adjust callers accordingly.
2020-03-24 15:44:45 +01:00
cf2b91aad0
import: crate: Deduplicate dependencies.
...
* guix/import/crate.scm (crate-version-dependencies): Deduplicate crate dependencies.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-24 15:44:45 +01:00
b488b64a3e
gnu: Add guile3.0-semver.
...
* gnu/packages/guile-xyz.scm (guile3.0-semver): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-24 15:44:45 +01:00
08d5341b1f
gnu: nano: Update to 4.9.
...
* gnu/packages/nano.scm (nano): Update to 4.9.
2020-03-24 15:47:58 +02:00
54a9fe3429
doc: Fix typo in example.
...
* doc/guix.texi (Base Services)[file->udev-rule]: Correct misspelt
"user-account".
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-24 13:10:43 +01:00
022767d7c1
doc: Fix typo.
...
* doc/guix.texi (Invoking guix time-machine): Fix typo.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-24 13:07:17 +01:00
151f3d416c
gnu: Add qgis.
...
* gnu/packages/geo.scm (qgis): New variable.
Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz>
Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
2020-03-24 11:42:41 +01:00
d13d28265f
licenses: Add QWT 1.0 license.
...
* guix/licenses.scm (qwt1.0): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-03-24 11:42:41 +01:00
5d33e789c2
licenses: Add Open Government Licence for Public Sector Information.
...
* guix/licenses.scm (ogl-psi1.0): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-03-24 11:42:40 +01:00
f7ac2fe1ce
gnu: Add saga.
...
* gnu/packages/geo.scm (saga): New variable.
2020-03-24 11:42:40 +01:00
9fce591479
gnu: Add grass.
...
* gnu/packages/geo.scm (grass): New variable.
2020-03-24 11:42:40 +01:00
efcb05083f
gnu: Add python-owslib.
...
* gnu/packages/python-xyz.scm (python-owslib): New variable.
2020-03-24 11:42:40 +01:00
b0d1da986b
gnu: r-harmony: Update to 0.1.
...
* gnu/packages/cran.scm (r-harmony): Update to 0.1.
[native-inputs]: Add autoconf.
2020-03-24 11:06:01 +01:00
8ff6386491
gnu: r-shiny: Update to 1.4.0.2.
...
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
2020-03-24 11:06:01 +01:00
5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
1f2f01aed5
gnu: r-bigpint: Update to 1.2.2.
...
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
4bcb38c801
gnu: r-biosigner: Update to 1.14.4.
...
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
2020-03-24 11:06:01 +01:00
d5951dc43a
gnu: r-gosemsim: Update to 2.12.1.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
c649d31957
gnu: r-tximport: Update to 1.14.2.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
c10bef9bd3
gnu: r-caret: Update to 6.0-86.
...
* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
1e40a27465
gnu: r-batchtools: Update to 0.9.13.
...
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
6005efa40f
gnu: r-mcmc: Update to 0.9-7.
...
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus
Tanguy Le Carrour
Paul Garlick
Christopher Baines
Josh Marshall
Danny Milosavljevic
Ludovic Courtès
Ludovic Courtès
Martin Becze
Efraim Flashner
Naga Malleswari
Guillaume Le Vaillant
Arun Isaac