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707 Commits (3059e12047a5074eb47da6ec69b08232fa737d9b)

Author SHA1 Message Date
Roel Janssen 06fc1a5142
gnu: Add r-cummerbund. 
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
 2020-04-27 11:46:08 +02:00
Roel Janssen 0c0ef9c5a6
gnu: Add r-coverageview. 
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
 2020-04-27 10:57:22 +02:00
Roel Janssen 8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
 2020-04-27 10:43:51 +02:00
Roel Janssen cb1ab0352b
gnu: Add r-karyoploter. 
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
 2020-04-27 10:37:42 +02:00
Roel Janssen e8d435f7a2
gnu: Add r-ideoviz. 
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
 2020-04-27 10:24:20 +02:00
Roel Janssen 1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description. 
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
 2020-04-26 21:47:19 +02:00
Roel Janssen 63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
 2020-04-26 21:34:49 +02:00
Roel Janssen 886125d791
gnu: Add r-motifbreakr. 
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
 2020-04-26 21:24:03 +02:00
Roel Janssen 3699bcf54a
gnu: Add r-motifdb. 
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
 2020-04-26 21:07:45 +02:00
Roel Janssen ec20858a6a
gnu: Add r-pasilla. 
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
 2020-04-26 21:02:00 +02:00
Ricardo Wurmus 3f782a6d95
gnu: r-destiny: Add missing input. 
* gnu/packages/bioconductor.scm (r-destiny)[native-inputs]: Add r-nbconvertr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 506cbeabaa
gnu: r-bacon: Add missing input. 
* gnu/packages/bioconductor.scm (r-bacon)[native-inputs]: Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus faaf2b3571
gnu: r-bioassayr: Add missing input. 
* gnu/packages/bioconductor.scm (r-bioassayr)[native-inputs]: Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 229736aa52
gnu: r-activepathways: Add missing input. 
* gnu/packages/bioconductor.scm (r-activepathways)[native-inputs]:
Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 5ef2b749b5
gnu: r-dose: Add missing input. 
* gnu/packages/bioconductor.scm (r-dose)[native-inputs]: Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus f4be4995d6
gnu: r-a4base: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 851081bf34
gnu: r-varianttools: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
 2020-04-14 16:41:00 +02:00
Vagrant Cascadian e40ecf8a2c
gnu: r-wavcluster: Fix grammar of "allows to integrate" to "integrates". 
* gnu/packages/bioconductor (r-wavcluster): Fix grammar.
 2020-04-12 14:59:45 -07:00
Vagrant Cascadian 8c4bf6c29c
gnu: r-aucell: Fix grammar of "allows to identify" to "identifies". 
* gnu/packages/bioconductor (r-aucell): Fix grammar.
 2020-04-12 14:59:43 -07:00
Vagrant Cascadian 23c8ef7124
gnu: r-fgsea: Various grammar and spelling fixes. 
* gnu/packages/bioconductor (r-fgsea): Fix spelling of "standard".
  Fix grammar of "allows to make" to "makes".
 2020-04-12 14:43:52 -07:00
Ricardo Wurmus 4ecba23091
gnu: r-biocworkflowtools: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.12.1.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:27 +02:00
Ricardo Wurmus 9669bc170a
gnu: r-mixomics: Update to 6.10.9. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.9.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:27 +02:00
Ricardo Wurmus d49e3f0190
gnu: r-cytoml: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to  1.12.1.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus 028fd6f786
gnu: r-gofuncr: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.1.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus 81a37891ec
gnu: r-genomicinteractions: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.2.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus 2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 51d1a7a2ef
gnu: r-mast: Add r-knitr to native inputs. 
* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
 2020-03-25 09:40:05 +01:00
Ricardo Wurmus 5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus 1f2f01aed5
gnu: r-bigpint: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus 4bcb38c801
gnu: r-biosigner: Update to 1.14.4. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus d5951dc43a
gnu: r-gosemsim: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus 2d6a7bca9e
gnu: r-biocpkgtools: Update to 1.4.6. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.4.6.
[propagated-inputs]: Add r-biocfilecache, r-rappdirs, r-rlang, and
r-tidyselect.
[native-inputs]: Add r-knitr.
 2020-03-19 10:06:27 +01:00
Ricardo Wurmus f7100edaf6
gnu: r-biosigner: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.2.
[native-inputs]: Remove r-rmarkdown, pandoc, and pandoc-citeproc.
 2020-03-19 10:06:27 +01:00
Tobias Geerinckx-Rice 486a080048
gnu: r-htqpcr: Update home page. 
* gnu/packages/bioconductor.scm (r-htqpcr)[home-page]: Use HTTPS link
to PDF paper.
 2020-03-17 23:09:24 +01:00
Ricardo Wurmus 6bd6097ed5
gnu: r-cicero: Update to 1.4.4. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0754fefb75
gnu: r-ggcyto: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus e0061f5125
gnu: r-mlinterfaces: Update to 1.66.5. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus 67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Tobias Geerinckx-Rice b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
 2020-03-02 21:46:27 +01:00
Ricardo Wurmus 5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
 2020-03-01 23:38:33 +01:00
Ricardo Wurmus e766ba9a52
gnu: r-cicero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
 2020-03-01 23:38:26 +01:00
Ricardo Wurmus 0a30342def
gnu: r-mlinterfaces: Update to 1.66.4. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
 2020-03-01 23:38:19 +01:00
Ricardo Wurmus aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
 2020-03-01 23:38:12 +01:00
Ricardo Wurmus 8351faae8a
gnu: r-chippeakanno: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
 2020-03-01 23:38:06 +01:00