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55921 Commits (3136fda73539f8cb78a219ba6ac4d0c6cd89c948)

Author SHA1 Message Date
Guillaume Le Vaillant 3136fda735
gnu: sbcl-trivial-backtrace: Fix deletion of test results.
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[arguments]: Fix
 'delete-test-results' phase.
2020-09-14 15:43:31 +02:00
Guillaume Le Vaillant 3d8c8d1542
gnu: Add cl-ppcre-unicode.
* gnu/packages/lisp-xyz.scm (cl-ppcre-unicode): New variable.
2020-09-13 11:27:19 +02:00
Guillaume Le Vaillant 135bc7e31b
gnu: sbcl-clsql: Activate postgresql support.
* gnu/packages/lisp-xyz.scm (sbcl-clsql)[arguments]: Remove 'clsql-cffi.asd'
  from 'asd-files'. Add 'clsql-postgresql' to 'asd-systems'. Add 'fix-build'
  phase.
2020-09-13 11:17:51 +02:00
Guillaume Le Vaillant 3b39207477
gnu: cl-uffi: Fix build.
* gnu/packages/lisp-xyz.scm (cl-uffi)[arguments]: Remove 'fix-permissions' and
  'reset-gzip-timestamp' phases.
2020-09-12 11:18:57 +02:00
Guillaume Le Vaillant cb92693ee2
gnu: sbcl-portable-threads: Update to 2.3-2.aa26bf3.
* gnu/packages/lisp-xyz.scm (sbcl-portable-threads): Update to 2.3-2.aa26bf3.
  [synopsis]: Shorten the synopsis.
2020-09-12 11:18:57 +02:00
Guillaume Le Vaillant f596b4768f
gnu: sbcl-cl-rdkafka: Fix build.
* gnu/packages/lisp-xyz.scm (sbcl-cl-rdkafka)[arguments]: Remove 'move-bundle'
  phase.
2020-09-12 11:18:57 +02:00
Guillaume Le Vaillant e44dd9a4e1
gnu: sbcl-osicat: Fix build.
* gnu/packages/lisp-xyz.scm (sbcl-osicat)[arguments]: Remove custom 'cleanup'
  phase.
2020-09-12 11:18:57 +02:00
Guillaume Le Vaillant 466bf553d7
gnu: sbcl-moptilities: Fix tests.
* gnu/packages/lisp-xyz.scm (sbcl-moptilities)[arguments]: Add 'fix-tests'
  phase.
2020-09-12 11:18:57 +02:00
Guillaume Le Vaillant 4136736b52
gnu: cl-asdf: Update to 3.3.4.
* gnu/packages/lisp.scm (cl-asdf): Update to 3.3.4.
  [arguments]: Add small patch for default ASDF configuration.
  (asdf-substitutions): Remove variable.
  (sbcl, ecl)[arguments]: Remove call to 'asdf-substitutions'.
2020-09-12 11:18:57 +02:00
Guillaume Le Vaillant 2ff8b5bafc
gnu: Adapt Lisp packages to changes in asdf-build-system.
* gnu/packages/patches/sbcl-graph-asdf-definitions.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/lisp-xyz.scm (sbcl-cl-ppcre)[arguments]: Add
  'disable-ppcre-unicode' phase.
  (sbcl-cl-unicode-base): Remove variable and merge its content in ...
  (sbcl-cl-unicode): ... here.
  (sbcl-cl-ppcre-unicode)[arguments]: Add 'disable-ppcre' phase.
  (sbcl-cl-aa, sbcl-cl-paths, sbcl-cl-paths-ttf): Remove variables and merge
  their contents in ...
  (sbcl-cl-vectors): ... here.
  (sbcl-spatial-trees)[arguments]: Remove 'asd-file' keyword.
  (sbcl-clx-truetype)[inputs]: Remove 'cl-paths-ttf'.
  (sbcl-slynk-boot0, sbcl-slynk-arglists, sbcl-slynk-util,
  sbcl-slynk-fancy-inspector, sbcl-slynk-package-fu, sbcl-slynk-mrepl,
  sbcl-slynk-trace-dialog, sbcl-slynk-profiler, sbcl-slynk-stickers,
  sbcl-slynk-indentation, sbcl-slynk-retro, slynk-systems): Remove variables
  and merge their contents in ...
  (sbcl-slynk): ... here.
  (uglify-js)[arguments]: Fix ASDF initialization in Lisp script.
  (sbcl-cl-yacc)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords
  and add 'asd-files' and 'asd-systems' keywords.
  (sbcl-3bmd-ext-code-blocks): Remove variable and merge its content in ...
  (sbcl-3bmd): ... here.
  (sbcl-slime-swank, ecl-slime-swank): New variables.
  (sbcl-mgl-pax)[propagated-inputs]: Remove and move the content in ...
  [inputs]: ... here. Remove '3bmd-ext-code-blocks'.
  (sbcl-prove-asdf): Remove variable and merge its content in ...
  (sbcl-prove): ... here.
  (sbcl-proc-parse)[native-inputs]: Remove 'prove-asdf'.
  (sbcl-ascii-strings, sbcl-simple-scanf): Remove variables and merge
  their contents in ...
  (sbcl-cl-string-match): ... here.
  (sbcl-queues.simple-queue, sbcl-queues.simple-cqueue,
  sbcl-queues.priority-queue, sbcl-queues.priority-cqueue): Remove variables
  and merge their contents in ...
  (sbcl-queues): ... here.
  (sbcl-cffi-bootstrap, sbcl-cffi-toolchain, sbcl-cffi-libffi,
  sbcl-cffi-grovel, sbcl-cffi-uffi-compat): Remove variables and merge their
  contents in ...
  (sbcl-cffi): ... here.
  (ecl-cffi): New variable.
  (sbcl-cl-sqlite)[arguments]: Remove 'asd-file' and 'asd-system-name'
  keywords and add 'asd-files' and 'asd-systems' keywords.
  (sbcl-cl-cffi-gtk-boot0, sbcl-cl-cffi-gtk-glib, sbcl-cl-cffi-gtk-gobject,
  sbcl-cl-cffi-gtk-gio, sbcl-cl-cffi-gtk-cairo, sbcl-cl-cffi-gtk-pango,
  sbcl-cl-cffi-gtk-gdk-pixbuf, sbcl-cl-cffi-gtk-gdk): Remove variables and
  merge their contents in ...
  (sbcl-cl-cffi-gtk): ... here.
  (sbcl-cl-webkit)[arguments]: Remove 'asd-file' and 'asd-system-name'
  keywords and add 'asd-files' and 'asd-systems' keywords.
  (sbcl-usocket-boot0, sbcl-usocket-server): Remove variables and merge their
  contents in ...
  (sbcl-usocket): ... here.
  (sbcl-cl-annot)[arguments]: Remove.
  (sbcl-cl-syntax-annot, sbcl-cl-syntax-interpol): Remove variables and merge
  their contents in ...
  (sbcl-cl-syntax): ... here.
  (sbcl-cl-utilities)[arguments]: Remove 'asd-file' and 'asd-system-name'
  keywords and add 'asd-files' and 'asd-systems' keywords.
  (sbcl-quri, sbcl-myway, sbcl-subseq, sbcl-smart-buffer)[native-inputs]:
  Remove 'prove-asdf'.
  (sbcl-fast-http)[native-inputs]: Remove 'prove-asdf' and
  'cl-syntax-interpol'. Add 'cl-syntax'.
  (sbcl-static-vectors)[native-inputs]: Remove 'cffi-grovel'. Add 'cffi'.
  (sbcl-jonathan)[native-inputs]: Remove 'prove-asdf'.
  [inputs]: Remove 'cl-syntax-annot'.
  (sbcl-http-body)[native-inputs]: Remove 'prove-asdf'.
  (sbcl-lack-request, sbcl-lack-response, sbcl-lack-component,
  sbcl-lack-util, sbcl-lack-middleware-backtrace,
  sbcl-lack-middleware-static): Remove variables and merge their contents
  in ...
  (sbcl-lack): ... here.
  (sbcl-ningle)[native-inputs]: Remove 'prove-asdf'.
  [inputs]: Remove 'cl-syntax-annot', 'lack-request', 'lack-response'
  and 'lack-component'. Add 'lack'.
  (clack-commit, clack-revision, sbcl-clack-handler-fcgi, sbcl-clack-socket,
  sbcl-clack-handler-hunchentoot): Remove variables and merge their contents
  in ...
  (sbcl-clack): ... here.
  (sbcl-parse-declarations)[arguments]: Remove 'asd-file' and
  'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords.
  (sbcl-burgled-batteries3)[inputs]: Remove 'cffi-grovel'.
  (sbcl-trivial-utf-8)[arguments]: Remove 'asd-file' and 'asd-system-name'
  keywords and add 'asd-files' and 'asd-systems' keywords.
  (sbcl-iolib.asdf, sbcl-iolib.conf, sbcl-iolib.common-lisp, sbcl-iolib.base,
  sbcl-iolib.grovel, sbcl-iolib+syscalls, sbcl-iolib+multiplex,
  sbcl-iolib+streams, sbcl-iolib+sockets): Remove variables and merge their
  contents in ...
  (sbcl-iolib): ... here.
  (sbcl-cxml+xml, sbcl-cxml+dom, sbcl-cxml+klacks, sbcl-cxml+test): Remove
  variables and merge their contents in ...
  (sbcl-cxml): ... here.
  (sbcl-cl-cookie)[native-inputs]: Remove 'prove-asdf'.
  (sbcl-dexador)[native-inputs]: Remove 'prove-asdf' and 'lack-request'. Add
  'lack".
  (sbcl-fare-quasiquote-optima, sbcl-fare-quasiquote-readtable,
  sbcl-fare-quasiquote-extras): Remove variables and merge their contents
  in ...
  (sbcl-fare-quasiquote): ... here.
  (sbcl-trivia.level0, sbcl-trivia.level1, sbcl-trivia.level2): Remove
  variables and merge their contents in ...
  (sbcl-trivia.trivial): ... here.
  (sbcl-trivia.balland2006, sbcl-trivia.ppcre, sbcl-trivia.quasiquote,
  sbcl-trivia.cffi): Remove variables and merge their contents in ...
  (sbcl-trivia): ... here.
  (sbcl-cl-str)[native-inputs]: Remove 'prove-asdf'.
  [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add
  'asd-files' and 'asd-systems' keywords.
  (sbcl-dbus): New variable.
  (sbcl-s-sysdeps)[inputs]: Remove 'usocket-server'.
  (sbcl-periods-series): Remove variable and merge its content in ...
  (sbcl-periods): ... here.
  (sbcl-fprog): Remove variable and merge its content in ...
  (sbcl-cambl): ... here.
  (sbcl-cl-ledger)[inputs]: Remove 'periods-series'. Add 'periods'.
  (sbcl-serapeum)[inputs]: Remove 'trivia.quasiquote' and
  'fare-quasiquote-extras'. Add 'fare-quasiquote'.
  (sbcl-stefil)[native-inputs]: Remove.
  [inputs]: Add swank.
  (sbcl-graph-dot, sbcl-graph-json): Remove variables and merge their contents
  in ...
  (sbcl-graph): ... here.
  (sbcl-foreign-array, sbcl-physical-dimension, sbcl-science-data): Remove
  variables and merge their contents in ...
  (sbcl-antik-base): ... here.
  (sbcl-gsll)[inputs]: Remove 'cffi-grovel', 'cffi-libffi' and
  'foreign-array'. Add 'antik-base' and 'cffi'.
  (sbcl-antik)[inputs]: Remove 'physical-dimension". Add 'antik-base'.
  [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add
  'asd-files' and 'asd-systems' keywords. Add 'fix-build' phase.
  (sbcl-symbol-munger-boot0): Remove variable and merge its content in ...
  (sbcl-symbol-munger): ... here.
  (sbcl-lisp-unit2-boot0): Remove variable and merge its content in ...
  (sbcl-lisp-unit2): ... here.
  (sbcl-cl-ana-boot0, sbcl-cl-ana.pathname-utils, sbcl-cl-ana.package-utils,
  sbcl-cl-ana.string-utils, sbcl-cl-ana.functional-utils,
  sbcl-cl-ana.list-utils, sbcl-cl-ana.generic-math,
  sbcl-cl-ana.math-functions, sbcl-cl-ana.calculus, sbcl-cl-ana.symbol-utils,
  sbcl-cl-ana.macro-utils, sbcl-cl-ana.binary-tree, sbcl-cl-ana.tensor,
  sbcl-cl-ana.error-propagation, sbcl-cl-ana.quantity, sbcl-cl-ana.table,
  sbcl-cl-ana.table-utils, sbcl-cl-ana.hdf-cffi, sbcl-cl-ana.int-char,
  sbcl-cl-ana.memoization, sbcl-cl-ana.typespec, sbcl-cl-ana.hdf-typespec,
  sbcl-cl-ana.hdf-utils, typed-table, sbcl-cl-ana.hdf-table,
  sbcl-cl-ana.gsl-cffi, sbcl-cl-ana.ntuple-table, sbcl-cl-ana.csv-table,
  sbcl-cl-ana.reusable-table, sbcl-cl-ana.linear-algebra, sbcl-cl-ana.lorentz,
  sbcl-cl-ana.clos-utils, sbcl-cl-ana.hash-table-utils, sbcl-cl-ana.map,
  sbcl-cl-ana.fitting, sbcl-cl-ana.histogram, sbcl-cl-ana.file-utils,
  sbcl-cl-ana.statistics, sbcl-cl-ana.gnuplot-interface, sbcl-cl-ana.plotting,
  sbcl-cl-ana.table-viewing, sbcl-cl-ana.serialization, sbcl-cl-ana.makeres,
  sbcl-cl-ana.makeres-macro, sbcl-cl-ana.makeres-block,
  sbcl-cl-ana.makeres-progress, sbcl-cl-ana.makeres-table,
  sbcl-cl-ana.makeres-graphviz, sbcl-cl-ana.makeres-branch, sbcl-cl-ana.utils,
  sbcl-cl-ana.statistical-learning): Remove variables and merge their contents
  in ...
  (sbcl-cl-ana): ... here.
  (sbcl-cl-libuv)[inputs]: Remove 'cffi-grovel'.
  (sbcl-cl-async-base, sbcl-cl-async-util, sbcl-cl-async-repl,
  sbcl-cl-async-ssl): Remove variables and merge their contents in ...
  (sbcl-cl-async): ... here.
  (sbcl-ltk-mw, sbcl-ltk-remote): Remove variables and merge their contents
  in ...
  (sbcl-ltk): ... here.
  [arguments]: Add 'fix-build' phase.
  (sbcl-hdf5-cffi)[inputs]: Remove 'cffi-grovel'.
  [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add
  'asd-files' and 'asd-systems' keywords.
  (sbcl-cl-randist, sbcl-float-features, sbcl-function-cache, sbcl-type-r,
  sbcl-trivialib-type-unify, sbcl-specialized-function, sbcl-constantfold,
  sbcl-gtype, sbcl-numcl)[arguments]: Remove 'asd-file' and 'asd-system-name'
  keywords and add 'asd-files' and 'asd-systems' keywords.
  (sbcl-pzmq)[inputs]: Remove 'cffi-grovel'.
  (sbcl-simple-date, sbcl-cl-postgres, sbcl-simple-date-postgrs-glue,
  sbcl-s-sql): Remove variables and merge their contents in ...
  (sbcl-postmodern): ... here.
  (sbcl-dbd-mysql, sbcl-dbd-postgres, sbcl-dbd-sqlite3): Remove variables and
  merge their contents in ...
  (sbcl-dbi): ... here.
  (sbcl-clsql-uffi, sbcl-clsql-sqlite3, sbcl-clsql-postgresql,
  sbcl-clsql-postgresql-socket3, sbcl-clsql-mysql): Remove variables and merge
  their contents in ...
  (sbcl-clsql): ... here.
  (sbcl-sycamore)[arguments]: Remove 'asd-file' keyword and add 'asd-files'
  keyword.
  (sbcl-osicat)[native-inputs]: Remove 'cffi-grovel'.
  (sbcl-clx-xembed, sbcl-quantile-estimator): Remove 'asd-system-name' keyword
  and add 'asd-systems' keyword.
  (sbcl-prometheus.collectors.sbcl, sbcl-prometheus.collectors.process,
  sbcl-prometheus.formats.test, sbcl-prometheus.exposers.hunchentoot,
  sbcl-prometheus.pushgateway): Remove variables and merge their contents
  in ...
  (sbcl-prometheus): ... here.
  (sbcl-sxql)[native-inputs]: Remove 'prove-asdf'.
  [inputs]: Remove 'cl-syntax-annot'. Add 'cl-syntax'.
  (sbcl-1am)[arguments]: Remove 'asd-system-name' keyword and add
  'asd-systems' keyword.
  (sbcl-cl-rdkafka)[inputs]: Remove 'cffi-grovel'.
  (sbcl-clump-2-3-tree, sbcl-clum-binary-tree): Remove variables and merge
  their contents in ...
  (sbcl-clump): ... here.
  (sbcl-cluffer-base, sbcl-cluffer-standard-line,
  sbcl-cluffer-standard-buffer, sbcl-cluffer-simple-line,
  sbcl-cluffer-simple-buffer): Remove variables and merge their contents
  in ...
  (sbcl-cluffer): ... here.
  (sbcl-cl-libsvm-format, sbcl-cl-online-learning,
  sbcl-cl-random-forest)[native-inputs]: Remove 'prove-asdf'.
  (sbcl-cl-freetype2)[inputs]: Remove 'cffi-grovel'.
  (sbcl-clim-lisp, sbcl-clim-basic, sbcl-clim-core, sbcl-esa-mcclim,
  sbcl-mcclim-fonts, sbcl-automaton, sbcl-persistent, sbcl-drei-mcclim,
  sbcl-clim, sbcl-mcclim-backend-common, sbcl-mcclim-clx,
  sbcl-mcclim-fonts-truetype, sbcl-mcclim-fonts-clx-truetype,
  sbcl-mcclim-clx-truetype, sbcl-mcclim-fontconfig, sbcl-mcclim-harfbuzz,
  sbcl-mcclim-fonts-clx-truetype, sbcl-mcclim-clx-freetype,
  sbcl-mcclim-render, sbcl-mcclim-clx-fb, xbcl-mcclim-null,
  sbcl-clim-postscript-font, sbcl-clim-postscript, sbcl-clim-pdf,
  sbcl-mcclim-looks, sbcl-mcclim-franz, sbcl-mcclim-bezier-core,
  sbcl-mcclim-bezier-clx, sbcl-mcclim-bezier, sbcl-mcclim-bitmaps,
  sbcl-conditional-commands, sbcl-mcclim-layouts-tab, sbcl-mcclim-extensions,
  sbcl-mcclim-test-util, sbcl-mcclim-raster-image, sbcl-clim-examples): Remove
  variables and merge their contents in ...
  (sbcl-mcclim): ... here.
  (sbcl-mito-core, sbcl-mito-migration, sbcl-lack-middleware-mito): Remove
  variables and merge their contents in ...
  (sbcl-mito): ... here.
  (sbcl-kebab)[native-inputs]: Remove 'prove-asdf'.
  (sbcl-datafly)[native-inputs]: Remove 'prove-asdf' and 'dbd-sqlite3'.
  [inputs]: Remove 'cl-syntax-annot'. Add 'cl-syntax'.
  (sbcl-caveman)[inputs]: Remove 'lack-request', 'lack-response' and
  'cl-syntax-annot'. Add 'lack' and 'cl-syntax'.
  [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add
  'asd-files' and 'asd-systems' keywords.
* gnu/packages/wm.scm (stumpwm, sbcl-stumpwm-ttf-fontsn, sbcl-stumpwm-pass,
  sbcl-stumpwm-globalwindows, sbcl-stumpwm-swm-gaps, sbcl-stumpwm-net,
  sbcl-stumpwm-wifi, sbcl-stumpwm-stumptray, sbcl-stumpwm-kbd-layouts): Remove
  'asd-system-name' keyword and add 'asd-systems' keyword.
  (stumpwm-with-slynk)[arguments]: Remove references to variables that don't
  exist anymore.
2020-09-12 11:18:56 +02:00
Guillaume Le Vaillant a13f45c150
build-system: asdf: Switch from bundles to regular compilation.
* gnu/packages/lisp.scm (sbcl, ecl)[native-search-paths]: Add
  'XDG_CONFIG_DIRS'.
* guix/build-system/asdf.scm (asdf-build): Replace 'asd-file' and
  'asd-system-name' keywords by 'asd-files' and 'asd-systems'.
* guix/build/asdf-build-system.scm (%object-prefix,
  %lisp-source-install-prefix): Update variables.
  (install): Update variable.
  (main-system-name): New variable.
  (copy-source): Replace 'asd-file' and 'asd-system-name' keywords by
  'asd-files' and 'asd-systems'.
  (configure): New variable.
  (build, check): Replace 'asd-file' and 'asd-system-name' keywords by
  'asd-files' and 'asd-systems'.
  (create-asd-file, symlink-asd-files): Remove variables.
  (create-asdf-configuration): New variable.
  (cleanup-files): Update variable.
  (%standard-phases): Remove 'create-asd-file' and 'symlink-asd-files' phases.
  Add 'configure' and 'create-asdf-configuration' phases.
* guix/build/lisp-utils.scm (%bundle-install-prefix, normalize-dependency,
  inputs->asd-file-map, asdf-load-all, compile-system): Remove variables.
  (compile-systems): New variable.
  (system-dependencies, compiled-system, generate-system-definition): Remove
  variable.
  (test-system): Replace 'asd-file' parameter by 'asd-files'.
  (generate-executable-for-system): Update variable.
  (generate-dependency-links, make-asd-file, bundle-asd-file): Remove
  variables.
  (make-asdf-configuration): New variable.
  (build-program, build-image): Set 'XDG_CONFIG_DIRS'.
  (generate-executable): Update variable.
2020-09-12 11:18:56 +02:00
Danny Milosavljevic 8ed0c56725
gnu: python-aiodns: Propagate python-pycares.
* gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares...
[propagated-inputs]: ...to here.
2020-09-12 02:33:06 +02:00
Raghav Gururajan dbcfefe5ec
gnu: Add poezio.
* gnu/packages/messaging.scm (poezio): New variable.
2020-09-12 02:25:31 +02:00
Raghav Gururajan c6e8d17b02
gnu: Add python-potr.
* gnu/packages/python-crypto.scm (python-potr): New variable.
2020-09-12 02:19:05 +02:00
Raghav Gururajan c519a5b5b6
gnu: Add python-slixmpp.
* gnu/packages/python-xyz.scm (python-slixmpp): New variable.
2020-09-12 02:16:57 +02:00
Danny Milosavljevic e88242cb75
gnu: ebusd: Enable MQTT support.
* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto.
2020-09-12 02:07:34 +02:00
Danny Milosavljevic c3bbaea727
gnu: Add mosquitto.
* gnu/packages/messaging.scm (mosquitto): New variable.
2020-09-12 02:07:30 +02:00
Tobias Geerinckx-Rice 52569eeb7f
gnu: lldpd: Update to 1.0.6.
* gnu/packages/networking.scm (lldpd): Update to 1.0.6.
2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice dd6eac3e47
gnu: enet: Update to 1.3.16.
* gnu/packages/networking.scm (enet): Update to 1.3.16.
2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice 0649c3cafa
gnu: batctl: Update to 2020.3.
* gnu/packages/networking.scm (batctl): Update to 2020.3.
2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice 54151d1af5
Revert "gnu: dovecot: Set moduledir to global directory."
This reverts commit db0109be42.
Same reason as commit d9d88c2ff0.
2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice ef500f9be4
gnu: padthv1: Update to 0.9.17.
* gnu/packages/music.scm (padthv1): Update to 0.9.17.
[inputs]: Replace fftw with fftwf.
2020-09-11 22:38:07 +02:00
Tobias Geerinckx-Rice a43fcc720e
gnu: libetpan: Update to 1.9.4.
* gnu/packages/mail.scm (libetpan): Update to 1.9.4.
2020-09-11 22:38:07 +02:00
Ricardo Wurmus a1ea0585d0
gnu: bsequencer: Update to 1.6.0.
* gnu/packages/music.scm (bsequencer): Update to 1.6.0.
2020-09-11 22:19:26 +02:00
Ricardo Wurmus 8458490bc2
gnu: r-adaptivesparsity: End build phase on #T.
* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase
"link-against-armadillo" with Boolean.
2020-09-11 22:04:41 +02:00
Ricardo Wurmus fd498532ab
gnu: r-adaptivesparsity: Fix case of "Gaussian".
* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo.
2020-09-11 22:04:12 +02:00
Ricardo Wurmus dbef55b7aa
gnu: r-qtl: Use CRAN-URI.
* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit
mirror URL.
2020-09-11 22:02:22 +02:00
Ricardo Wurmus 1e8bfc4cf9
gnu: r-qtl: Correct indentation.
* gnu/packages/cran.scm (r-qtl): Reindent.
[description]: Reflow paragraphs.
2020-09-11 22:00:30 +02:00
zimoun d4e2ec1b8a
gnu: r-absfiltergsea: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here...
* gnu/packages/cran.scm (r-absfiltergsea): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:23 +02:00
zimoun 77c7394086
gnu: r-diversitree: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:23 +02:00
zimoun 415aa8a583
gnu: r-phangorn: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:21 +02:00
zimoun f9c0b2e05a
gnu: r-seurat: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:17 +02:00
zimoun b31c364467
gnu: r-maldiquant: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here...
* gnu/packages/cran.scm (r-maldiquant): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:12 +02:00
zimoun 30aaee3306
gnu: r-seqminer: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:07 +02:00
zimoun 66a8e62070
gnu: r-qtl2: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:59:03 +02:00
zimoun 496a52dc41
gnu: r-qtl: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-qtl): Move from here...
* gnu/packages/cran.scm (r-qtl): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:58 +02:00
zimoun c23ff34423
gnu: r-igraph: Move to (gnu packages cran).
* gnu/packages/graph.scm (r-igraph): Move from here...
* gnu/packages/cran.scm (r-igraph): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:55 +02:00
zimoun 1dc50e4190
gnu: r-diffusionmap: Move to (gnu packages cran).
* gnu/packages/graph.scm (r-diffusionmap): Move from here...
* gnu/packages/cran.scm (r-diffusionmap): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:49 +02:00
zimoun d3d38bd8f1
gnu: r-adaptivesparsity: Move to (gnu packages cran).
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:48:38 +02:00
zimoun b17ace24ca
gnu: r-codedepends: Comment why it is in bioconductor.scm.
* gnu/packages/bioconductor.scm (r-codedepends): Add comment.
2020-09-11 21:46:51 +02:00
Peter Lo 7e88ee9f02
gnu: Add r-fhtest.
* gnu/packages/bioconductor.scm (r-fhtest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:33:02 +02:00
Peter Lo 655c4bb25c
gnu: Add r-interval.
* gnu/packages/bioconductor.scm (r-interval): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:01:30 +02:00
Peter Lo 962c7ceff5
gnu: Add r-perm.
* gnu/packages/cran.scm (r-perm): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 19:18:46 +02:00
Peter Lo 4a13770003
gnu: Add r-mlecens.
* gnu/packages/cran.scm (r-mlecens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 19:16:51 +02:00
Peter Lo 488001eb3f
gnu: Add r-icens.
* gnu/packages/bioconductor.scm (r-icens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 19:13:58 +02:00
Ricardo Wurmus 19748ea380
gnu: r-tidymodels: Update to 0.1.1.
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1.
[propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and
r-tidytext; add r-modeldata and r-tidyr.
[native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc.
2020-09-11 19:06:47 +02:00
Ricardo Wurmus cecb700853
gnu: r-infer: Update to 0.5.3.
* gnu/packages/cran.scm (r-infer): Update to 0.5.3.
2020-09-11 19:06:47 +02:00
Ricardo Wurmus 6edf558fd0
gnu: Add r-modeldata.
* gnu/packages/cran.scm (r-modeldata): New variable.
2020-09-11 19:06:47 +02:00
Ricardo Wurmus 37e9a7fabf
gnu: r-parsnip: Update to 0.1.3.
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3.
2020-09-11 19:04:10 +02:00
Ricardo Wurmus f5d7f42ae2
gnu: r-tidytext: Update to 0.2.5.
* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5.
[propagated-inputs]: Remove r-stopwords; add r-tibble.
2020-09-11 19:04:06 +02:00