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105264 Commits (32afcf9b90b2b34720db14dc3fa232d1cd193072)

Author SHA1 Message Date
zimoun fc60b9dfe7
gnu: r-aggregatebiovar: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.8.0.
 2022-11-24 12:31:12 +01:00
zimoun f74c670c7f
gnu: r-agdex: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.46.0.
 2022-11-24 12:31:12 +01:00
zimoun 014fc145f8
gnu: r-affyrnadegradation: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.44.0.
 2022-11-24 12:31:12 +01:00
zimoun 69ecae7801
gnu: r-affixcan: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.16.0.
 2022-11-24 12:31:12 +01:00
zimoun b772bc7f75
gnu: r-adsplit: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.68.0.
 2022-11-24 12:31:12 +01:00
zimoun daf0729533
gnu: r-adimpute: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.8.0.
 2022-11-24 12:31:12 +01:00
zimoun a62284ad13
gnu: r-adamgui: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.14.0.
 2022-11-24 12:31:12 +01:00
zimoun 38fc0acf4d
gnu: r-adam: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.14.0.
 2022-11-24 12:31:11 +01:00
zimoun f24085bfb3
gnu: r-absseq: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.52.0.
 2022-11-24 12:31:11 +01:00
zimoun 349804b602
gnu: r-abarray: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.66.0.
 2022-11-24 12:31:11 +01:00
zimoun 8f67799a1b
gnu: Add r-gson. 
* gnu/packages/cran.scm (r-gson): New variable.
 2022-11-24 12:31:11 +01:00
zimoun 176fd3b052
gnu: Add r-rorcid. 
* gnu/packages/cran.scm (r-rorcid): New variable.
 2022-11-24 12:31:11 +01:00
zimoun 3d073b86d3
gnu: Add r-biocbaseutils. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): New variable.
 2022-11-24 12:31:11 +01:00
zimoun e273f52358
gnu: r-ggprism: Update to 1.0.4. 
* gnu/packages/cran.scm (r-ggprism): Update to 1.0.4.
 2022-11-24 12:31:11 +01:00
zimoun c70207ae3b
gnu: r-ggplot2: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.0.
[propagated-inputs]: Add r-cli, r-lifecycle, and r-vctrs.
 2022-11-24 12:31:11 +01:00
zimoun 8105b3c09f
gnu: Add r-hdo-db. 
* gnu/packages/bioconductor.scm (r-hdo-db): New variable.
 2022-11-24 12:31:11 +01:00
zimoun f4a7ccc976
guix: Upgrade to Bioconductor 3.16. 
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.16.
* guix/import/cran.scm (%bioconductor-version): Same.
 2022-11-24 12:31:11 +01:00
conses 68113dc249
gnu: Add whoogle-search. 
* gnu/packages/python-web.scm (whoogle-search): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Bruno Victal 42898ae8ca
gnu: Add mympd. 
* gnu/packages/mpd.scm (mympd): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner 963e86af87
gnu: Add hebcal. 
* gnu/packages/calendar.scm (hebcal): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner 4ca2159bab
gnu: Add go-github-com-hebcal-hebcal-go. 
* gnu/packages/golang.scm (go-github-com-hebcal-hebcal-go): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner b0307b7c12
gnu: Add go-github-com-hebcal-gematriya. 
* gnu/packages/golang.scm (go-github-com-hebcal-gematriya): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner 58eef1a258
gnu: Add go-github-com-nathan-osman-go-sunrise. 
* gnu/packages/golang.scm (go-github-com-nathan-osman-go-sunrise): New
variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:24 +00:00
Paul A. Patience 8bde62d174
gnu: Add cl-tar. 
* gnu/packages/lisp-xyz.scm (sbcl-tar, cl-tar, ecl-tar): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:16:50 +01:00
Paul A. Patience b0c392ffcf
gnu: Add cl-tar-file. 
* gnu/packages/lisp-xyz.scm (sbcl-tar-file, cl-tar-file, ecl-tar-file):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:11:18 +01:00
Paul A. Patience 8a620036d7
gnu: Add cl-40ants-doc. 
* gnu/packages/lisp-xyz.scm (sbcl-40ants-doc, cl-40ants-doc,
  ecl-40ants-doc): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:06:21 +01:00
kiasoc5 4a97591d0a
gnu: btrfs-progs: Update to 6.0.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 6.0.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:15:58 +08:00
kiasoc5 6e142c69bd
gnu: xfsprogs: Update to 6.0.0. 
* gnu/packages/linux.scm (xfsprogs): Update to 6.0.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:13:01 +08:00
jgart 148c75e75e
gnu: clasp: Update to 3.3.9. 
* gnu/packages/maths.scm (clasp): Update to 3.3.9.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:08:54 +08:00
Simen Endsjø c4bbdaf2db
gnu: font-iosevka: Update to 16.4.0. 
* gnu/packages/fonts.scm (font-iosevka): Update to 16.4.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:07:11 +08:00
Tobias Geerinckx-Rice 22d44f8776
doc: Note that ‘guix package’ accepts file names. 
* doc/guix.texi (Package Management)[Invoking guix package]:
Mention support for operating on store file names.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2022-11-20 01:00:00 +01:00
Ludovic Courtès d33ed58169
offload: Increase default 'overload-threshold' value. 
When offloading to a single machine, the previous default value would
lead 'guix offload' to wait possibly for several minutes between
subsequent builds until normalized load would finally go below 0.6.
Increasing it mitigates that.

* guix/scripts/offload.scm (<build-machine>)[overload-threshold]: Bump
to 0.8.
* doc/guix.texi (Daemon Offload Setup): Likewise.
 2022-11-23 19:34:42 +01:00
Ludovic Courtès 02a4e54250
gnu: grep: Skip 'triple-backref' test. 
* gnu/packages/base.scm (grep)[arguments]: Add
'skip-triple-backref-test' phase for GNU/Hurd.
 2022-11-23 19:34:42 +01:00
Ludovic Courtès 2b151eb286
gnu: gettext: Skip Gnulib tests that fail on GNU/Hurd. 
* gnu/packages/gettext.scm (gettext-minimal)[arguments]: In
'patch-tests' phase, arrange to not run 'test-tls'.  Adjust
'XFAIL_TESTS' flag passed to #:make-flags.
 2022-11-23 19:34:42 +01:00
Jonathan Brielmaier 7a2082023a
NEWS: Update it. 
* NEWS: Shepherd is already at 0.9.3 now.
 2022-11-23 17:22:11 +01:00
Tobias Geerinckx-Rice f7cb2b22a2
gnu: guile-torrent: Fix build. 
* gnu/packages/guile-xyz.scm (guile-torrent)[propagated-inputs]:
Replace (3.0) guile-gcrypt with guile2.2-gcrypt.

Reported by mirai on #guix.
 2022-11-20 01:00:00 +01:00
Pierre Neidhardt 22a788d085
gnu: sbcl-cl-prevalence: Update to 20221122. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-prevalence): Update to 20221122.
This update contains a critical bugfix, hence the conssecutive version bump.
 2022-11-23 13:59:57 +01:00
Ricardo Wurmus 4b23e2d868
gnu: python-py7zr: Update to 0.20.2. 
* gnu/packages/python-compression.scm (python-py7zr): Update to 0.20.2.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-brotli, python-brotlicffi,
python-importlib-metadata, python-inflate64, python-psutil, python-pybcj,
python-pycryptodomex, and python-pyppmd; remove python-bcj-cffi,
python-ppmd-cffi, python-pycryptodome, and python-zstandard.
 2022-11-23 13:57:48 +01:00
Ricardo Wurmus 101a4e2718
gnu: Add python-pybcj. 
* gnu/packages/python-compression.scm (python-pybcj): New variable.
 2022-11-23 13:57:48 +01:00
Ricardo Wurmus 6ea2229f89
gnu: Add python-inflate64. 
* gnu/packages/python-compression.scm (python-inflate64): New variable.
 2022-11-23 13:57:48 +01:00
Ricardo Wurmus 136760c3a9
gnu: python-multivolumefile: Update to 0.2.3. 
* gnu/packages/python-compression.scm (python-multivolumefile): Update to
0.2.3.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-pep517 and python-setuptools; add
python-hypothesis.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus fb2d4aa088
gnu: Add python-brotlicffi. 
* gnu/packages/python-compression.scm (python-brotlicffi): New variable.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus d2a7bd50a9
gnu: Add python-pyppmd. 
* gnu/packages/python-compression.scm (python-pyppmd): New variable.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus 0d9b69795d
gnu: python-zstandard: Update to 0.19.0. 
* gnu/packages/python-compression.scm (python-zstandard): Update to 0.19.0.
[propagated-inputs]: Add python-cffi.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus 32fa848611
gnu: python-pyzstd: Update to 0.15.3. 
* gnu/packages/python-compression.scm (python-pyzstd): Update to 0.15.3.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus 48a5dc0ffb
gnu: python-ppmd-cffi: Update to 0.5.0. 
* gnu/packages/python-compression.scm (python-ppmd-cffi): Update to 0.5.0.
[native-inputs]: Remove python-setuptools and python-pep517; add
python-hypothesis.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus 3ab9adba57
gnu: python-munkres: Conditionally disable failing test. 
* gnu/packages/python-xyz.scm (python-munkres)[arguments]: Add phase
"disable-test" to patch test suite.
 2022-11-23 13:57:47 +01:00
Mădălin Ionel Patrașcu 093bf20cdc
gnu: Add r-alpine. 
* gnu/packages/bioconductor.scm (r-alpine): New variable.
 2022-11-23 13:57:43 +01:00
Sharlatan Hellseher 7fa8c05753
gnu: python-cdflib: Update to 0.4.9. 
* gnu/packages/astronomy.scm (python-cdflib): Update to 0.4.9.
[build-system]: Use pyproject-build-system to simplify package.
[description]: Expand acronym for CDF.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-23 09:53:11 +00:00
Sharlatan Hellseher 6ffe15bda7
gnu: Add cl-cacau. 
* gnu/packages/lisp-check.scm (cl-cacau, ecl-cacau, sbcl-cacau): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-23 09:53:11 +00:00