e7921d5ecb
gnu: guile: Add 3.0.0.
...
* gnu/packages/guile.scm (guile-3.0): New variable.
(guile-next): Turn into an alias for GUILE-3.0.
2020-01-16 18:30:57 +01:00
47212fc763
records: Improve reporting of "invalid field specifier" errors.
...
Previously users would just see:
error: invalid field specifier
without source location or hints.
* guix/records.scm (expand): Add optional 'parent-form' parameter and
pass it to 'syntax-violation' when it is true.
(make-syntactic-constructor): Pass S as a third argument to
'report-invalid-field-specifier'.
* guix/ui.scm (report-load-error): For 'syntax-error', show SUBFORM or
FORM in the message.
* tests/records.scm ("define-record-type* & wrong field specifier"): Add
a 'subform' parameter and adjust test accordingly.
("define-record-type* & wrong field specifier, identifier"): New test.
* tests/guix-system.sh: Add test.
2020-01-16 18:30:57 +01:00
84c5da08dd
guix package: Export 'transaction-upgrade-entry'.
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* guix/scripts/package.scm (transaction-upgrade-entry): Add 'store'
parameter and use it instead of (%store). Export.
* tests/packages.scm ("transaction-upgrade-entry, zero upgrades")
("transaction-upgrade-entry, one upgrade")
("transaction-upgrade-entry, superseded package"): Adjust accordingly.
2020-01-16 18:30:57 +01:00
4fe01b09ea
publish: Export 'signed-string'.
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* guix/scripts/publish.scm (signed-string): Export and improve docstring.
* tests/publish.scm ("/*.narinfo")
("/*.narinfo with properly encoded '+' sign"): Adjust accordingly.
2020-01-16 18:30:57 +01:00
a2548a3b5e
gnu: Update copyright header.
...
* gnu/packages/python-xyz.scm: Update copyright header.
2020-01-16 18:06:36 +01:00
d7df48fad4
gnu: neomutt: Update to 20191207.
...
* gnu/packages/mail.scm (neomutt): Update to 20191207.
2020-01-16 17:32:35 +01:00
a8fa39cd08
gnu: lmdb: Update to 0.9.24.
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* gnu/packages/databases.scm (lmdb): Update to 0.9.24.
2020-01-16 17:32:35 +01:00
1b4c5af29c
gnu: asymptote: Fix GUI.
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Fixes bug#39147.
* gnu/packages/plotutils.scm (asymptote)[inputs]: Add missing inputs.
[arguments]: Wrap GUI executable "xasy".
2020-01-16 17:09:48 +01:00
07c8177b88
gnu: Add python-cson.
...
* gnu/packages/python-xyz.scm (python-cson): New variable.
2020-01-16 17:09:48 +01:00
602f3b6793
gnu: Add python-speg.
...
* gnu/packages/python-xyz.scm (python-speg): New variable.
2020-01-16 17:09:48 +01:00
d14e4745b3
repl: Fix '--help' message.
...
* guix/scripts/repl.scm: (show-help): Add '--listen' option message.
2020-01-16 15:27:24 +01:00
e8728862a1
repl: Add '--load-path' option.
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* guix/scripts/repl.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
2020-01-16 15:27:24 +01:00
3c8396b578
edit: Add '--load-path' option.
...
* guix/scripts/edit.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
2020-01-16 15:27:24 +01:00
21f4fbdd84
refresh: Add '--load-path' option.
...
* guix/scripts/refresh.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
2020-01-16 15:27:24 +01:00
2d4688c1ea
size: Add '--load-path' option.
...
* guix/scripts/size.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
2020-01-16 15:27:24 +01:00
ee9a735bc8
graph: Add '--load-path' option.
...
* guix/scripts/graph.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
* tests/guix-graph.sh: Test it.
2020-01-16 15:27:20 +01:00
ba07842c34
gnu: cuirass: Update to 0.0.1-27.46f73b6.
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* gnu/packages/ci.scm (cuirass): Update to 0.0.1-27.46f73b6.
2020-01-16 08:42:59 +00:00
d1ac643062
gnu: r-variancepartition: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
2020-01-16 06:53:31 +01:00
e8ccb98a08
gnu: r-flowworkspace: Update to 3.34.1.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
2020-01-16 06:53:31 +01:00
3f42bd81a5
gnu: r-ropls: Update to 1.18.6.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
2020-01-16 06:53:31 +01:00
516fa945b3
gnu: r-mlinterfaces: Update to 1.66.2.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
2020-01-16 06:53:31 +01:00
ac9a9c374c
gnu: r-clusterprofiler: Update to 3.14.3.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
2020-01-16 06:53:31 +01:00
99e2a24978
gnu: r-inspect: Update to 1.16.2.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
2020-01-16 06:53:31 +01:00
7a8fcdaccc
gnu: r-regioner: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
2020-01-16 06:53:31 +01:00
f8f181ae41
gnu: r-affycoretools: Update to 1.58.4.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
2020-01-16 06:53:31 +01:00
d64124df89
gnu: r-delayedarray: Update to 0.12.2.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.2.
2020-01-16 06:53:31 +01:00
f7b5c1a02f
gnu: r-iranges: Update to 2.20.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.2.
2020-01-16 06:53:31 +01:00
fdf69f1ee0
gnu: r-s4vectors: Update to 0.24.2.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.2.
2020-01-16 06:53:31 +01:00
7241b44ad4
gnu: r-biocstyle: Update to 2.14.4.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.4.
2020-01-16 06:53:30 +01:00
8ef91aeb25
gnu: r-poibin: Update to 1.5.
...
* gnu/packages/cran.scm (r-poibin): Update to 1.5.
2020-01-16 06:53:30 +01:00
4fac081a49
gnu: r-gdina: Update to 2.7.8.
...
* gnu/packages/cran.scm (r-gdina): Update to 2.7.8.
2020-01-16 06:53:30 +01:00
951e1d4be7
gnu: r-desolve: Update to 1.27.1.
...
* gnu/packages/cran.scm (r-desolve): Update to 1.27.1.
2020-01-16 06:53:30 +01:00
dedbacdc75
gnu: r-parameters: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-parameters): Update to 0.4.0.
2020-01-16 06:53:30 +01:00
82ab1f4ca8
gnu: r-umap: Update to 0.2.4.1.
...
* gnu/packages/cran.scm (r-umap): Update to 0.2.4.1.
2020-01-16 06:53:30 +01:00
697e103ad0
gnu: r-batchtools: Update to 0.9.12.
...
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.12.
2020-01-16 06:53:30 +01:00
a0bb0df325
gnu: r-rttf2pt1: Update to 1.3.8.
...
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.8.
2020-01-16 06:53:30 +01:00
4db8ee8b9a
gnu: r-bookdown: Update to 0.17.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.17.
2020-01-16 06:53:30 +01:00
f324747843
gnu: r-shinyjs: Update to 1.1.
...
* gnu/packages/cran.scm (r-shinyjs): Update to 1.1.
2020-01-16 06:53:30 +01:00
35bbec27cb
gnu: r-future-apply: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-future-apply): Update to 1.4.0.
2020-01-16 06:53:30 +01:00
c7040fe4ad
gnu: r-tmb: Update to 1.7.16.
...
* gnu/packages/cran.scm (r-tmb): Update to 1.7.16.
2020-01-16 06:53:30 +01:00
c8cf595a31
gnu: r-multcomp: Update to 1.4-12.
...
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-12.
2020-01-16 06:53:30 +01:00
707608fdc4
gnu: r-proc: Update to 1.16.1.
...
* gnu/packages/cran.scm (r-proc): Update to 1.16.1.
2020-01-16 06:53:29 +01:00
5ec991e6f3
gnu: r-sjmisc: Update to 2.8.3.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.3.
2020-01-16 06:53:29 +01:00
4a3351e3cd
gnu: r-insight: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-insight): Update to 0.8.0.
2020-01-16 06:53:29 +01:00
4afe271458
gnu: r-hdf5r: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.1.
2020-01-16 06:53:29 +01:00
220875e123
gnu: r-fansi: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-fansi): Update to 0.4.1.
2020-01-16 06:53:29 +01:00
b329d5f0b2
gnu: r-bibtex: Update to 0.4.2.2.
...
* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.2.
2020-01-16 06:53:29 +01:00
dc196dfd44
gnu: r-trend: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-trend): Update to 1.1.2.
2020-01-16 06:53:29 +01:00
b3f02e1af5
gnu: r-tinytex: Update to 0.19.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.19.
2020-01-16 06:53:29 +01:00
b468f073fa
gnu: r-xfun: Update to 0.12.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.12.
2020-01-16 06:53:29 +01:00
Ludovic Courtès
Nicolas Goaziou
Tobias Geerinckx-Rice
zimoun
Pierre Neidhardt
Christopher Baines
Ricardo Wurmus