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Author SHA1 Message Date
Guillaume Le Vaillant
7c829150ed
gnu: python-stem: Fix tests wth python 3.9. 
* gnu/packages/python-xyz.scm (python-stem)[arguments]: Add 'fix-tests' phase.
 2021-09-11 14:39:41 +02:00
Guillaume Le Vaillant
c605aa254c
gnu: python-faker: Update to 8.12.1. 
* gnu/packages/python-xyz.scm (python-faker): Update to 8.12.1.
 2021-09-11 14:31:26 +02:00
Guillaume Le Vaillant
9cfa0078e6
gnu: python-random2: Fix building with python 3.9. 
* gnu/packages/patches/python-random2-getrandbits-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-random2)[source]: Use it.
 2021-09-11 14:16:46 +02:00
Ludovic Courtès
d9dfbf886d
Merge branch 'master' into core-updates-frozen 2021-09-07 14:19:08 +02:00
Ludovic Courtès
b949f34f31
gnu: Use the non-deprecated TeX packages. 
This commit leaves 'dblatex' and 'texlive-hyperref' as users of
deprecated packages, but these have many dependents.

* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Use
non-deprecated TeX Live packages.
(velvet)[native-inputs]: Likewise.
* gnu/packages/chez.scm (chez-scheme)[native-inputs]: Likewise.
(chez-web)[native-inputs]: Likewise.
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Likewise.
* gnu/packages/guile-xyz.scm (emacsy)[native-inputs]: Likewise.
* gnu/packages/maths.scm (hypre)[native-inputs]: Likewise.
* gnu/packages/music.scm (lilypond)[native-inputs]: Likewise.
* gnu/packages/ocaml.scm (ocaml-bibtex2html)[native-inputs]: Likewise.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]:
Likewise.
(python-matplotlib-documentation)[native-inputs]: Likewise.
(python-ipython-documentation)[native-inputs]: Likewise.
(python-nbconvert)[native-inputs]: Likewise.
(python-pypandoc)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Likewise.
* gnu/packages/tex.scm (texlive-pstool)[propagated-inputs]: Likewise.
(teximpatient)[native-inputs]: Likewise.
(texlive-latex-pgf)[propagated-inputs]: Likewise.
(texlive-beamer)[propagated-inputs]: Likewise.
 2021-09-06 22:02:15 +02:00
Felix Gruber
8bb7cb7bef
gnu: python-gast: Update to 0.5.2. 
* gnu/packages/python-xyz.scm (python-gast): Update to 0.5.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-09-05 10:02:18 +02:00
Lars-Dominik Braun
e82b103a77
gnu: python-rarfile: Update to 4.0. 
This package is close to useless, because we lack the non-free unrar
utility and the libarchive backend does not support most operations.

* gnu/packages/python-xyz.scm (python-rarfile)[version]: Update to 4.0.
[arguments]: Disable tests.
[propagated-inputs]: Move…
[inputs]: …here.
[native-inputs]: Add pytest.
[#:phases]: Use pytest for 'check and Add 'patch phase.
(python2-rarfile): Remove, unsupported by upstream.
 2021-09-04 14:53:36 +02:00
Lars-Dominik Braun
26fe4d77bf
gnu: python-jellyfish: Update to 0.8.8. 
* gnu/packages/python-xyz.scm (python-jellyfish)[version]: Update to 0.8.8.
[arguments]: Use pytest.
[properties]: Remove python2-variant.
(python2-jellyfish): Remove, unsupported by upstream.
 2021-09-04 14:53:36 +02:00
Lars-Dominik Braun
ddb8852a9b
gnu: python-munkres: Update to 1.1.4. 
* gnu/packages/python-xyz.scm (python-munkres) [version]: Update to 1.1.4.
[arguments]: Re-enable test suite.
[native-inputs]: Add pytest.
 2021-09-04 14:53:36 +02:00
Lars-Dominik Braun
8ceb7651c2
gnu: python-confuse: Update to 1.5.0. 
* gnu/packages/python-xyz.scm (python-confuse)[version]: Update to 1.5.0.
[propagated-inputs]: Remove python-pathlib.
[synopsis]: Remove trailing dot.
 2021-09-04 14:53:32 +02:00
Pierre Langlois
f6e80d4e16
gnu: Remove python2-selectors2. 
* gnu/packages/python-xyz.scm (python2-selectors2): Remove variable.
 2021-09-02 20:47:12 +01:00
Pierre Langlois
99735609fc
gnu: Remove python2-rfc6555. 
* gnu/packages/python-xyz.scm (python2-rfc6555): Remove variable.
(python-rfc6555)[properties]: Remove field.
 2021-09-02 20:47:00 +01:00
phodina
406f726cfb
gnu: Add date2name. 
* gnu/packages/python-xyz.scm (date2name): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-09-01 23:41:42 +02:00
Ricardo Wurmus
c4f500d032
gnu: python-anyio: Avoid failing tests. 
* gnu/packages/python-xyz.scm (python-anyio)[arguments]: Disable asyncio
plugin, and explicitly disable network tests.
 2021-08-31 23:11:05 +02:00
Ricardo Wurmus
73995969b1
gnu: Remove python-pytest-mock-3. 
* gnu/packages/check.scm (python-pytest-mock-3): Remove variable.
* gnu/packages/python-xyz.scm (python-anyio)[native-inputs]: Replace
python-pytest-mock-3 with python-pytest-mock.
 2021-08-31 23:11:05 +02:00
Guillaume Le Vaillant
651e1f17cc
gnu: python-bsddb3: Update to 6.2.9. 
* gnu/packages/python-xyz.scm (python-bsddb3): Update to 6.2.9.
 2021-08-30 11:48:20 +02:00
Guillaume Le Vaillant
d011429b42
gnu: python-chai: Remove Python2 code. 
* gnu/packages/patches/python-chai-drop-python2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-chai)[source]: Use it.
 2021-08-28 23:33:08 +02:00
Guillaume Le Vaillant
16ae9ebd21
gnu: python2-chai: Remove package. 
Nothing depends on it.

* gnu/packages/python-xyz.scm (python2-chai): Remove variable.
 2021-08-28 23:24:19 +02:00
Guillaume Le Vaillant
f7e69b53d6
gnu: python-owslib: Fix build. 
* gnu/packages/python-xyz.scm (python-owslib)[arguments]: Disable
  'sanity-check' phase until dependencies for tests are packaged.
 2021-08-28 21:44:36 +02:00
Guillaume Le Vaillant
89d862493f
gnu: python2-pillow: Disable tests. 
* gnu/packages/python-xyz.scm (python2-pillow)[arguments]: Disable tests.
 2021-08-23 17:51:24 +02:00
Guillaume Le Vaillant
25adb1b6cd
gnu: python2-gamera: Disable wxpython support. 
The package doesn't build when wxpython support is activated, and the only
dependent (didjvu) doesn't need it.

* gnu/packages/python-xyz.scm (python2-gamera)[inputs]: Remove
  python2-wxpython.
  [arguments]: Add 'disable-wx-support' phase.
 2021-08-23 17:41:15 +02:00
Efraim Flashner
06e258c3c0
gnu: python-jupyter-core: Use GUIX_PYTHONPATH. 
* gnu/packages/python-xyz.scm (python-jupyter-core)[arguments]: Adjust
custom 'patch-testsuite phase to use GUIX_PYTHONPATH as the PYTHONPATH.
 2021-08-22 14:08:54 +03:00
Efraim Flashner
c37bd286ea
gnu: python-jsonschema: Update inputs. 
* gnu/packages/python-xyz.scm (python-jsonschema)[propagated-inputs]:
Remove python-importlib-metadata.
(python2-jsonschema)[propagated-inputs]: Add python2-importlib-metadata.
 2021-08-22 14:08:54 +03:00
Efraim Flashner
5987855f21
gnu: python-jsonschema: Fix test suite. 
* gnu/packages/python-xyz.scm (python-jsonschema)[arguments]: Adjust
custom 'check phase to honor #:tests and to set the
JSON_SCHEMA_TEST_SUTE environment variable.
 2021-08-22 14:08:54 +03:00
Mathieu Othacehe
a4da8b83a0
gnu: python-matplotlib: Update to 3.4.3. 
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.4.3.
[source]: Remove patch that is applied upstream.
[propagated-inputs]: Add python-certifi.
[inputs]: Add qhull.
[native-inputs]: Add python-wheel.
[arguments]: Extend regexp to match more image comparison tests.
Wrap long lines.
Use system freetype and qhull libraries.
 2021-08-16 13:19:27 +02:00
Mathieu Othacehe
591a3f5714
gnu: bpython: Update to 0.21. 
* gnu/packages/python-xyz.scm (bpython): Update to 0.21.
[propagated-inputs]: Use python-cwcwidth instead of python-wcwidth.
Add python-pyxdg.
[native-inputs]: Add python-tox and python-wheel.
 2021-08-16 09:04:21 +02:00
Mathieu Othacehe
011862f5ff
gnu: Add python-cwcwidth. 
* gnu/packages/python-xyz.scm (python-cwcwidth): New variable.
 2021-08-16 09:04:21 +02:00
Mathieu Othacehe
c39470b115
gnu: python-jedi: Update to 0.18.0-1.1d94494. 
* gnu/packages/python-xyz (python-jedi): Update to 0.18.0-1.1d94494.
[source]: Switch to git-fetch.
[native-inputs]: Add python-django-stubs and python-typeshed.
[arguments]: New unpack-submodule-sources phase. Also do not run pytest tests
that fail with pytest 6 revision.
 2021-08-15 10:47:04 +02:00
Mathieu Othacehe
e24691dce6
gnu: python-parso: Update to 0.8.2. 
* gnu/packages/python-xyz.scm (python-parso): Update to 0.8.2.
 2021-08-15 10:47:04 +02:00
Mathieu Othacehe
1516fd8a4e
gnu: Add python-sgmllib3k. 
* gnu/packages/python-xyz.scm (python-sgmllib3k): New variable.
 2021-08-14 16:36:05 +02:00
Marius Bakke
c4133c43c7
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/algebra.scm
	gnu/packages/games.scm
	gnu/packages/golang.scm
	gnu/packages/kerberos.scm
	gnu/packages/mail.scm
	gnu/packages/python.scm
	gnu/packages/ruby.scm
	gnu/packages/scheme.scm
	gnu/packages/tex.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
 2021-08-12 00:30:27 +02:00
Efraim Flashner
6a29b83423
gnu: python-identify: Honor #:tests in check phase. 
* gnu/packages/python-xyz.scm (python-identify)[arguments]: Honor tests?.
 2021-08-09 20:19:05 +03:00
Efraim Flashner
81698e5099
gnu: python-identify: Fix building. 
* gnu/packages/python-xyz.scm (python-identify)[arguments]: Skip the
'ensure-no-mtimes-pre-1980 phase.
 2021-08-09 20:19:05 +03:00
Efraim Flashner
1d5d115e76
gnu: Remove python-distutils/next. 
* gnu/packages/python-xyz.scm (python-distutils/next): Remove variable.
(python-virtualenv)[propagated-inputs]: Switch from
python-distutils/next to python-distutils.
* gnu/packages/version-control.scm (pre-commit)[inputs]: Same.
 2021-08-09 20:19:05 +03:00
Efraim Flashner
5b6ac91ee4
gnu: Remove python-setuptools-scm/next. 
* gnu/packages/python-xyz.scm (python-setuptools-scm/next): Remove
variable.
(python-pikepdf) [native-inputs]: Swap for python-setuptools-scm.
* gnu/packages/python-compression.scm (python-multivolumefile,
python-bcj-cffi, python-ppmd-cffi, python-p77zr)[native-inputs]: Same.
* gnu/packages/pep.scm (python-pep-adapter)[native-inputs]: Same.
 2021-08-09 17:48:05 +03:00
Efraim Flashner
23d0007e9a
gnu: python-astroid: Update to 2.6.6. 
* gnu/packages/python-xyz.scm (python-astroid): Update to 2.6.6.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-dateutil.
 2021-08-09 15:11:02 +03:00
Efraim Flashner
b8295d2529
gnu: python-jinja2: Update to 3.0.1. 
* gnu/packages/python-xyz.scm (python-jinja2): Update to 3.0.1.
 2021-08-09 13:51:48 +03:00
Efraim Flashner
967999f096
gnu: python-markupsafe: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-markupsafe): Update to 2.0.1.
 2021-08-09 13:51:48 +03:00
Efraim Flashner
1122663e4f
gnu: python-itsdangerous: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-itsdangerous): Update to 2.0.1.
 2021-08-09 13:51:48 +03:00
Efraim Flashner
70833c2ec8
gnu: python-markupsafe: Honor #:tests in check phase. 
* gnu/pacakges/python-xyz.scm (python-markupsafe)[arguments]: Honor #:tests flag.
 2021-08-09 13:51:30 +03:00
Efraim Flashner
3fe23854eb
gnu: python-soupsieve: Fix building. 
* gnu/packages/python-xyz.scm (python-soupsieve)[arguments]: Skip sanity
check. Convert to gexp.
 2021-08-09 12:14:16 +03:00
Efraim Flashner
79ca85d2ff
gnu: python-pyicu: Update to 2.7.4. 
* gnu/packages/python-xyz.scm (python-pyicu): Update to 2.7.4.
 2021-08-09 12:04:21 +03:00
Efraim Flashner
d418784dbd
gnu: python-docopt: Honor #:tests? in check phase. 
* gnu/packages/python-xyz.scm (python-docopt)[arguments]: In custom
'check phase honor #:tests?.
 2021-08-09 10:02:02 +03:00
Efraim Flashner
23b9dadc1d
gnu: python-docopt: Fix test suite for pytest-6. 
* gnu/packages/python-xyz.scm (python-docopt)[source]: Add patch.
* gnu/packages/patches/python-docopt-pytest6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2021-08-09 10:00:38 +03:00
Marius Bakke
d2e102d4e4
Merge branch 'master' into core-updates-frozen 2021-08-01 23:23:32 +02:00
Marius Bakke
b029be2ee0
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
 2021-07-29 22:34:57 +02:00
Nicolas Goaziou
74dad2c75a
gnu: python-pikepdf: Update to 2.16.1. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.1.
 2021-07-29 10:28:08 +02:00
Ricardo Wurmus
41431282e2
gnu: Add python-zict. 
* gnu/packages/python-xyz.scm (python-zict): New variable.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
45ee09dc96
gnu: Add python-heapdict. 
* gnu/packages/python-xyz.scm (python-heapdict): New variable.
 2021-07-28 20:31:06 +02:00
Ricardo Wurmus
242221e380
gnu: python-dask: Update to 2021.7.1. 
* gnu/packages/python-xyz.scm (python-dask): Update to 2021.7.1.
[arguments]: Do not skip test_shuffle.
 2021-07-28 20:31:05 +02:00