17fa0953a8
gnu: r-ggalluvial: Update to 0.12.3.
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* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.3.
2020-12-09 22:03:28 +01:00
d856813829
gnu: r-v8: Update to 3.4.0.
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* gnu/packages/cran.scm (r-v8): Update to 3.4.0.
2020-12-09 22:03:28 +01:00
3e337d9bb7
gnu: r-rticles: Update to 0.17.
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* gnu/packages/cran.scm (r-rticles): Update to 0.17.
2020-12-09 22:03:28 +01:00
00a275fbf4
gnu: r-magrittr: Update to 2.0.1.
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* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.1.
2020-12-09 22:03:28 +01:00
6c148eaae7
import/utils: Fix conditional.
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This is a follow-up to commit 45584061a9
2020-12-09 22:03:28 +01:00
18ddbd474b
gnu: r-d3r: Update to 0.9.1.
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* gnu/packages/cran.scm (r-d3r): Update to 0.9.1.
[arguments]: Use esbuild for minification.
[native-inputs]: Add source for D3 version 6; replace uglify-js with esbuild.
2020-12-09 22:03:28 +01:00
d106e3e7f6
gnu: Add r-projpred.
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* gnu/packages/cran.scm (r-projpred): New variable.
2020-12-09 22:03:28 +01:00
fab49665bb
gnu: Add r-optimx.
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* gnu/packages/cran.scm (r-optimx): New variable.
2020-12-09 22:03:28 +01:00
8d15940f3c
gnu: Add r-gamm4.
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* gnu/packages/cran.scm (r-gamm4): New variable.
2020-12-09 22:03:28 +01:00
f0862a3578
gnu: Add r-fds.
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* gnu/packages/cran.scm (r-fds): New variable.
2020-12-09 22:03:27 +01:00
6279d2b6dd
gnu: Add r-rainbow.
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* gnu/packages/cran.scm (r-rainbow): New variable.
2020-12-09 22:03:27 +01:00
14caba7eeb
gnu: Add r-hdrcde.
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* gnu/packages/cran.scm (r-hdrcde): New variable.
2020-12-09 22:03:27 +01:00
feb7c4f6ca
gnu: Add r-ash.
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* gnu/packages/cran.scm (r-ash): New variable.
2020-12-09 22:03:27 +01:00
73545fde42
gnu: Add r-parallelly.
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* gnu/packages/cran.scm (r-parallelly): New variable.
2020-12-09 22:03:27 +01:00
9c3f5b2fa0
gnu: Add r-gitcreds.
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* gnu/packages/cran.scm (r-gitcreds): New variable.
2020-12-09 22:03:27 +01:00
71a732c35d
gnu: Add r-waldo.
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* gnu/packages/cran.scm (r-waldo): New variable.
2020-12-09 22:03:27 +01:00
24cf213edb
gnu: Add r-diffobj.
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* gnu/packages/cran.scm (r-diffobj): New variable.
2020-12-09 22:03:27 +01:00
bd5f751259
gnu: Add r-brio.
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* gnu/packages/cran.scm (r-brio): New variable.
2020-12-09 22:03:26 +01:00
eaca440b65
gnu: python-llfuse: Update to 1.3.8.
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* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8.
2020-12-09 15:41:25 -05:00
2a23e3f582
gnu: dealii: Update to 9.2.0.
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* gnu/packages/maths.scm (dealii): Update to 9.2.0.
2020-12-09 13:42:05 -06:00
e36291ef52
gnu: Add r-restrserve.
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* gnu/packages/cran.scm (r-restrserve): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09 19:33:35 +00:00
5f6a001933
gnu: Add kiwix-desktop.
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* gnu/packages/web.scm (kiwix-desktop): New variable.
2020-12-09 18:25:32 +01:00
acbf47a067
gnu: Add kiwix-lib.
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* gnu/packages/web.scm (kiwix-lib): New variable.
2020-12-09 18:25:32 +01:00
44308c8c5f
gnu: Add libzim.
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* gnu/packages/web.scm (libzim): New variable.
2020-12-09 18:24:46 +01:00
a294eecd98
gnu: Add emacs-helm-switch-to-repl.
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* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
2020-12-09 17:27:51 +01:00
5103459664
gnu: emacs-debbugs: Update to 0.27.
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* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
2020-12-09 14:54:27 +01:00
3d85c3ec65
gnu: pciutils: Fix compilation error on GNU/Hurd.
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* gnu/packages/patches/pciutils-hurd-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pciutils.scm (pciutils)[arguments]: Add
'apply-hurd-patch' phase when (hurd-target?) is true.
[inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
2020-12-09 14:13:33 +01:00
69a0440a02
doc: Document 'advertise?' for 'guix-publish-configuration'.
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* doc/guix.texi (Base Services): Document the 'advertise?' field of
'guix-publish-configuration'.
2020-12-09 14:13:33 +01:00
f066e65713
services: guix-publish: Depend on 'avahi-daemon' when needed.
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* gnu/services/base.scm (guix-publish-shepherd-service): Add
'user-processes' to 'requirement'. When ADVERTISE? is true, also add
'avahi-daemon'.
2020-12-09 14:13:32 +01:00
59a6780f70
services: avahi: Depend on 'user-processes'.
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* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes'
to 'requirement'.
2020-12-09 14:13:32 +01:00
ebf11de4e3
gnu: r-diffbind: Update to 3.0.8.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
2020-12-09 12:12:48 +01:00
4617cc7fd5
gnu: r-rhtslib: Propagate zlib.
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* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
2020-12-09 12:12:48 +01:00
7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:48 +01:00
cde035e67f
gnu: r-gqtlstats: Update to 1.21.3.
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* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
2020-12-09 12:12:48 +01:00
6a4818716d
gnu: r-gqtlbase: Update to 1.21.1.
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Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
2020-12-09 12:12:48 +01:00
64f9fb308f
gnu: r-bigmelon: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
2020-12-09 12:12:48 +01:00
9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
2020-12-09 12:12:47 +01:00
8db36c1f68
gnu: r-yarn: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
2020-12-09 12:12:47 +01:00
adf6edc750
gnu: r-quantro: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
2020-12-09 12:12:47 +01:00
4eeaa159d2
gnu: r-lumi: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
2020-12-09 12:12:47 +01:00
0b7dd44706
gnu: r-methylumi: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
2020-12-09 12:12:47 +01:00
e5a4198bc3
gnu: r-minfi: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
2020-12-09 12:12:47 +01:00
45dfb75166
gnu: Add r-catalyst.
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* gnu/packages/bioconductor.scm (r-catalyst): New variable.
2020-12-09 12:12:47 +01:00
43bf50ecae
gnu: r-ggcyto: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09 12:12:47 +01:00
b856a48768
gnu: r-scdd: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09 12:12:47 +01:00
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09 12:12:47 +01:00
1174317e03
gnu: r-pcatools: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
2020-12-09 12:12:47 +01:00
970984237a
gnu: r-biocviews: Update to 1.58.1.
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* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.1.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
b03c955c6f
gnu: r-scran: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
d4b5d18684
gnu: r-scater: Update to 1.18.3.
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* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
Ricardo Wurmus
Leo Famulari
Eric Bavier
Eric Brown
Pierre Neidhardt
Nicolas Goaziou
Ludovic Courtès
zimoun