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114142 Commits (3a2a833691526368b5ea36e67e6aa8430e0e252c)

Author SHA1 Message Date
Ricardo Wurmus c9794ffe59
gnu: r-decipher: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 52e738d346
gnu: r-debcam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.18.0.
[source]: Delete bundled Java archives.
[arguments]: Add phase 'build-jar; add phase 'strip-jar-timestamps; do a fake
installation and disable tests due to a regression in R 4.3.0.
[inputs]: Replace openjdk with icedtea:jdk; add java-pj.
[native-inputs]: Add zip.
 2023-04-29 20:27:17 +02:00
Ricardo Wurmus 2bf6f659c4
gnu: Add java-pj. 
* gnu/packages/java.scm (java-pj): New variable.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 4837210129
gnu: r-dearseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 8f93a53a4c
gnu: r-damefinder: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 01ba2a24d2
gnu: r-dama: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-dama): Update to 1.72.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 9b305554a3
gnu: r-cummerbund: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.42.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 6233b26d1d
gnu: r-coverageview: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus f869abfae3
gnu: r-cardelino: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 084e990d2f
gnu: r-breakpointr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.18.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus cb191936d8
gnu: r-biocgenerics: Update to 0.46.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.46.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 3b302bdf35
gnu: r-biocversion: Update to 3.17.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.17.1.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus ae85652e4b
gnu: r-barcodetrackr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.8.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 41bff44b32
gnu: r-banocc: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.24.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus c6d14bd6fb
gnu: r-bandits: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 7bce4cdacb
gnu: r-bambu: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 4f4d38cc4d
gnu: r-badregionfinder: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.28.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus e10c8fe41a
gnu: r-bader: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bader): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus ff5191816e
gnu: r-basespacer: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.44.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus bc466e59b8
gnu: r-baalchip: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.26.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 14191d89a7
gnu: r-awst: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-awst): Update to 1.8.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus d12336de7d
gnu: r-awfisher: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.14.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus ed2578b585
gnu: r-attract: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-attract): Update to 1.52.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 36aa29a62f
gnu: r-atsnp: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.16.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 9f61c365a4
gnu: r-atena: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-atena): Update to 1.6.0.
[propagated-inputs]: Remove r-scales.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 7751b88692
gnu: r-asset: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-asset): Update to 2.18.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 32b0da7762
gnu: r-assessorf: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.18.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 0968cf8f55
gnu: r-aspli: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.10.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus ba469d4674
gnu: r-asics: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-asics): Update to 2.16.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus d3ae3e616e
gnu: r-asgsca: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.34.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus e1e75eec31
gnu: r-aseb: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.44.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 4a5f8cede6
gnu: r-asafe: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.26.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 5329b80aa1
gnu: r-arrayexpress: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.60.0.
[propagated-inputs]: Remove r-xml; add r-httr, r-jsonlite, and r-rlang.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 0e88aa5b07
gnu: r-antiprofiles: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.40.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus b77e71f07c
gnu: r-annmap: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.42.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 18ad546d0a
gnu: r-anf: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-anf): Update to 1.22.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 099340458b
gnu: r-aneufinder: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.28.0.
[propagated-inputs]: Remove r-reordercluster.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 8e5e97293d
gnu: r-altcdfenvs: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.62.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 55f6d75cdb
gnu: r-alpsnmr: Update to 4.2.0. 
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.2.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus dec3658f6b
gnu: r-alpine: Update to 1.25.0. 
* gnu/packages/bioconductor.scm (r-alpine): Update to 1.25.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 19636f0341
gnu: r-alphabeta: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.14.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 76ffa191be
gnu: r-alevinqc: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 769af4fda7
gnu: r-aldex2: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.32.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 87932885ea
gnu: r-anvil: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.12.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus fd5e94f6df
gnu: r-annotationhubdata: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.30.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 6027d657bd
gnu: r-animalcules: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.16.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 71b23bf5e1
gnu: r-ancombc: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 1f753b82c1
gnu: r-anaquin: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.24.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus ab79d3a4b8
gnu: r-amaretto: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.16.0.
 2023-04-29 20:09:31 +02:00
Ricardo Wurmus 4b2295bd4f
gnu: r-amplican: Update to 1.21.0. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.21.0.
 2023-04-29 20:09:31 +02:00