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Author SHA1 Message Date
Ricardo Wurmus 2a7532cca8
gnu: r-clusterexperiment: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.12.0.
[propagated-inputs]: Remove r-rspectra; add r-biocsingular.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 2b4c784b2b
gnu: r-clusterprofiler: Update to 4.0.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 8b0dc8e39c
gnu: r-enrichplot: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.0.
[propagated-inputs]: Add r-ggtree.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus ca136dd70a
gnu: r-dose: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus c8bec0d962
gnu: r-fgsea: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.18.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 1bfe5c274f
gnu: r-sigpathway: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.60.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus dda291540b
gnu: r-anota: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.40.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 376d9dd825
gnu: r-gosemsim: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.18.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus faf60162a3
gnu: r-heatplus: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.0.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 1ade726fdf
gnu: r-varianttools: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.34.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 2c5bba1392
gnu: r-tradeseq: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.6.0.
[propagated-inputs]: Remove r-clusterexperiment and r-dplyr; add r-matrix, r-matrixstats,
and r-viridis.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 0c35cde14f
gnu: r-ioniser: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.16.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus ac150da152
gnu: r-linnorm: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.16.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus f1635d65e7
gnu: r-lumi: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.44.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 973d33484b
gnu: r-methylumi: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.38.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus a387e1d89c
gnu: r-minfi: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.38.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 136adea01b
gnu: r-bumphunter: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.34.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 18c81e5615
gnu: r-siggenes: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.66.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 7e29fb98e1
gnu: r-illuminaio: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.34.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 23d3d7af06
gnu: r-geoquery: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.60.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 6db7802b5b
gnu: r-scone: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.0.
[propagated-inputs]: Add r-matrixgenerics and r-singlecellexperiment.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 611024367b
gnu: r-scdd: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.16.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus d7390d7c63
gnu: r-noiseq: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.36.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 716ac28a58
gnu: r-monocle: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 12ec22ca50
gnu: r-mast: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.18.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 79928c5e58
gnu: r-icobra: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 2ed5a0844e
gnu: r-ihw: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 0c15284ad0
gnu: r-lpsymphony: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus c63c44190d
gnu: r-karyoploter: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.18.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 9a67123210
gnu: r-ebseq: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.32.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 729f6adcf4
gnu: r-dnacopy: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.66.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus ac27feed69
gnu: r-copynumber: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.32.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 749cf40ecc
gnu: r-chipexoqual: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.16.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus a10f236ca3
gnu: r-savr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.30.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 8aef574b84
gnu: r-biocsingular: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.8.0.
[propagated-inputs]: Add r-scaledmatrix.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus f5ae14832c
gnu: r-biocneighbors: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.10.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 618f98c022
gnu: r-ruvseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.26.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus cac2839447
gnu: r-dnabarcodes: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.22.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus c6078d915d
gnu: r-inspect: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.22.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 79c1e0335f
gnu: r-plgem: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.64.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 481c3222e6
gnu: r-rots: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.20.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 089f64657b
gnu: r-glimma: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.2.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 4485bc7183
gnu: r-goseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.44.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 87d6e68015
gnu: r-ctc: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.66.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 675f1a9144
gnu: r-genomicinteractions: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus ba7757cf1f
gnu: r-interactionset: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.20.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 43a0a48a69
gnu: r-riboseqr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 0443b3c180
gnu: r-riboprofiling: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.22.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus afc59d2e2c
gnu: r-chipcomp: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.22.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 38f2e3979f
gnu: r-bayseq: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 11c7a044bd
gnu: r-qdnaseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.28.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 1c3e239270
gnu: r-cghcall: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.54.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 09c90d8fb4
gnu: r-cghbase: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.52.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 0045d21f67
gnu: r-marray: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.70.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 202202c8ad
gnu: r-matrixgenerics: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 538605493c
gnu: r-chippeakanno: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.0.
[propagated-inputs]: Add r-interactionset.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus fceca5cd82
gnu: r-graph: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.70.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus bed64f7be6
gnu: r-multtest: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.48.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus ff7a86f0ca
gnu: r-mbkmeans: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.8.0.
[propagated-inputs]: Remove r-bluster; add r-rcpparmadillo.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 27abca93b1
gnu: r-diffbind: Update to 3.2.1. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.1.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 737a228702
gnu: r-greylistchip: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.24.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 941a868515
gnu: r-apeglm: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.14.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 371149da6f
gnu: r-qvalue: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.24.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 359c350c7d
gnu: r-oligo: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.56.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 2c9c656f47
gnu: r-oligoclasses: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.54.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus c68607725b
gnu: r-geneplotter: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.70.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 473371dfc1
gnu: r-zlibbioc: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.38.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 092d2a8d85
gnu: r-xvector: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.32.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus e4a34df239
gnu: r-vsn: Update to 3.60.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.60.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus c73b9d6c66
gnu: r-variantannotation: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.38.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 2817a8f292
gnu: r-tximport: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus ad6ba3de65
gnu: r-topgo: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 7728c5909f
gnu: r-systempiper: Update to 1.26.2. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2.
[propagated-inputs]: Add r-testthat.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 81c55df9a8
gnu: r-sva: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 6eaa9221d9
gnu: r-summarizedexperiment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 8c0f2d9e0a
gnu: r-structuralvariantannotation: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 8e0dac09c4
gnu: r-slingshot: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.0.0.
[propagated-inputs]: Remove r-ape; add r-s4vectors and r-trajectoryutils.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 15f371cc89
gnu: r-shortread: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.50.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 76edc5ae98
gnu: r-seqpattern: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.24.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 58ae27d46c
gnu: r-seqlogo: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.58.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 5ce21e7153
gnu: r-rtracklayer: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.0.
[propagated-inputs]: Add r-biocio and r-restfulr.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus e22d743aa6
gnu: r-rsamtools: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.8.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus f2f4ca7456
gnu: r-rhdf5filters: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.4.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 51bee5c40f
gnu: r-reportingtools: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 2da4ee4c77
gnu: r-regioner: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.24.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 38fa99c1d0
gnu: r-rcas: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.18.0.
[propagated-inputs]: Add r-knitr.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 7c45bc9391
gnu: r-rbgl: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.68.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus dc67525ae6
gnu: r-protgenerics: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.24.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 0ec6177cc1
gnu: r-pcamethods: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.84.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 5d37cee6c1
gnu: r-organismdbi: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.34.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 00b2174930
gnu: r-mzid: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.30.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus d647eb090b
gnu: r-msnbase: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.18.0.
[propagated-inputs]: Remove r-preprocesscore; add r-mscoreutils.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus c966cef2b4
gnu: r-mutationalpatterns: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.2.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 0b3fd7e89a
gnu: r-methylkit: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.18.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 595b75e05c
gnu: r-limma: Update to 3.48.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 60b598ee16
gnu: r-keggrest: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.32.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 2cbb8e19af
gnu: r-interactivedisplaybase: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.30.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 94b4e64fd0
gnu: r-impute: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.66.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 76fc8a53b2
gnu: r-rhtslib: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.24.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 78eb1fdf3e
gnu: r-hpar: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.34.0.
 2021-06-05 09:12:43 +02:00