11c7a044bd
gnu: r-qdnaseq: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.28.0.
2021-06-05 09:12:46 +02:00
1c3e239270
gnu: r-cghcall: Update to 2.54.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.54.0.
2021-06-05 09:12:46 +02:00
09c90d8fb4
gnu: r-cghbase: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.52.0.
2021-06-05 09:12:46 +02:00
0045d21f67
gnu: r-marray: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.70.0.
2021-06-05 09:12:46 +02:00
202202c8ad
gnu: r-matrixgenerics: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.0.
2021-06-05 09:12:46 +02:00
538605493c
gnu: r-chippeakanno: Update to 3.26.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.0.
[propagated-inputs]: Add r-interactionset.
2021-06-05 09:12:46 +02:00
fceca5cd82
gnu: r-graph: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.70.0.
2021-06-05 09:12:46 +02:00
bed64f7be6
gnu: r-multtest: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.48.0.
2021-06-05 09:12:45 +02:00
ff7a86f0ca
gnu: r-mbkmeans: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.8.0.
[propagated-inputs]: Remove r-bluster; add r-rcpparmadillo.
2021-06-05 09:12:45 +02:00
27abca93b1
gnu: r-diffbind: Update to 3.2.1.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.1.
2021-06-05 09:12:45 +02:00
737a228702
gnu: r-greylistchip: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.24.0.
2021-06-05 09:12:45 +02:00
941a868515
gnu: r-apeglm: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.14.0.
2021-06-05 09:12:45 +02:00
371149da6f
gnu: r-qvalue: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.24.0.
2021-06-05 09:12:45 +02:00
359c350c7d
gnu: r-oligo: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-oligo): Update to 1.56.0.
2021-06-05 09:12:45 +02:00
2c9c656f47
gnu: r-oligoclasses: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.54.0.
2021-06-05 09:12:45 +02:00
c68607725b
gnu: r-geneplotter: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.70.0.
2021-06-05 09:12:45 +02:00
473371dfc1
gnu: r-zlibbioc: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
092d2a8d85
gnu: r-xvector: Update to 0.32.0.
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* gnu/packages/bioconductor.scm (r-xvector): Update to 0.32.0.
2021-06-05 09:12:45 +02:00
e4a34df239
gnu: r-vsn: Update to 3.60.0.
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* gnu/packages/bioconductor.scm (r-vsn): Update to 3.60.0.
2021-06-05 09:12:45 +02:00
c73b9d6c66
gnu: r-variantannotation: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
2817a8f292
gnu: r-tximport: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
2021-06-05 09:12:45 +02:00
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gnu: r-topgo: Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
2021-06-05 09:12:45 +02:00
7728c5909f
gnu: r-systempiper: Update to 1.26.2.
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* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2.
[propagated-inputs]: Add r-testthat.
2021-06-05 09:12:45 +02:00
81c55df9a8
gnu: r-sva: Update to 3.40.0.
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* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
2021-06-05 09:12:45 +02:00
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gnu: r-summarizedexperiment: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
2021-06-05 09:12:44 +02:00
8c0f2d9e0a
gnu: r-structuralvariantannotation: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
8e0dac09c4
gnu: r-slingshot: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.0.0.
[propagated-inputs]: Remove r-ape; add r-s4vectors and r-trajectoryutils.
2021-06-05 09:12:44 +02:00
15f371cc89
gnu: r-shortread: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-shortread): Update to 1.50.0.
2021-06-05 09:12:44 +02:00
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gnu: r-seqpattern: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
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gnu: r-seqlogo: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.58.0.
2021-06-05 09:12:44 +02:00
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gnu: r-rtracklayer: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.0.
[propagated-inputs]: Add r-biocio and r-restfulr.
2021-06-05 09:12:44 +02:00
e22d743aa6
gnu: r-rsamtools: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.8.0.
2021-06-05 09:12:44 +02:00
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gnu: r-rhdf5filters: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.4.0.
2021-06-05 09:12:44 +02:00
51bee5c40f
gnu: r-reportingtools: Update to 2.32.0.
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* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.0.
2021-06-05 09:12:44 +02:00
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gnu: r-regioner: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
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gnu: r-rcas: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-rcas): Update to 1.18.0.
[propagated-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
7c45bc9391
gnu: r-rbgl: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.68.0.
2021-06-05 09:12:44 +02:00
dc67525ae6
gnu: r-protgenerics: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
0ec6177cc1
gnu: r-pcamethods: Update to 1.84.0.
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* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.84.0.
2021-06-05 09:12:44 +02:00
5d37cee6c1
gnu: r-organismdbi: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.34.0.
2021-06-05 09:12:44 +02:00
00b2174930
gnu: r-mzid: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-mzid): Update to 1.30.0.
2021-06-05 09:12:44 +02:00
d647eb090b
gnu: r-msnbase: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.18.0.
[propagated-inputs]: Remove r-preprocesscore; add r-mscoreutils.
2021-06-05 09:12:43 +02:00
c966cef2b4
gnu: r-mutationalpatterns: Update to 3.2.0.
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* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.2.0.
2021-06-05 09:12:43 +02:00
0b3fd7e89a
gnu: r-methylkit: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.18.0.
2021-06-05 09:12:43 +02:00
595b75e05c
gnu: r-limma: Update to 3.48.0.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.0.
2021-06-05 09:12:43 +02:00
60b598ee16
gnu: r-keggrest: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.32.0.
2021-06-05 09:12:43 +02:00
2cbb8e19af
gnu: r-interactivedisplaybase: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.30.0.
2021-06-05 09:12:43 +02:00
94b4e64fd0
gnu: r-impute: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-impute): Update to 1.66.0.
2021-06-05 09:12:43 +02:00
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gnu: r-rhtslib: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.24.0.
2021-06-05 09:12:43 +02:00
78eb1fdf3e
gnu: r-hpar: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.34.0.
2021-06-05 09:12:43 +02:00
330a7fe3b1
gnu: r-gseabase: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.54.0.
2021-06-05 09:12:43 +02:00
214e784b57
gnu: r-gostats: Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-gostats): Update to 2.58.0.
2021-06-05 09:12:43 +02:00
1b44202e20
gnu: r-genomicranges: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.44.0.
2021-06-05 09:12:43 +02:00
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gnu: r-genomicfiles: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
62889b9915
gnu: r-genomicfeatures: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.0.
[propagated-inputs]: Add r-biocio.
2021-06-05 09:12:43 +02:00
570e80d62f
gnu: r-genomicalignments: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
f88ab81fc7
gnu: r-genomeinfodb: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
ef7bbc40de
gnu: r-genomation: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-genomation): Update to 1.24.0.
[propagated-inputs]: Remove r-runit.
2021-06-05 09:12:43 +02:00
3c024e9e96
gnu: r-geneoverlap: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.28.0.
2021-06-05 09:12:42 +02:00
389ce4e42b
gnu: r-genefilter: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.0.
2021-06-05 09:12:42 +02:00
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gnu: r-gage: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-gage): Update to 2.42.0.
2021-06-05 09:12:42 +02:00
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gnu: r-fastseg: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.38.0.
2021-06-05 09:12:42 +02:00
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gnu: r-ensembldb: Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.0.
2021-06-05 09:12:42 +02:00
bdc1b908d3
gnu: r-edger: Update to 3.34.0.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.0.
2021-06-05 09:12:42 +02:00
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gnu: r-edaseq: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.0.
2021-06-05 09:12:42 +02:00
30ce1f9b66
gnu: r-dirichletmultinomial: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.34.0.
2021-06-05 09:12:42 +02:00
e9445cdd78
gnu: r-dexseq: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.38.0.
2021-06-05 09:12:42 +02:00
45225c60cc
gnu: r-deseq2: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.32.0.
2021-06-05 09:12:42 +02:00
2835e7c0be
gnu: r-copywriter: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.24.0.
2021-06-05 09:12:42 +02:00
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gnu: r-complexheatmap: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.8.0.
[propagated-inputs]: Remove r-s4vectors; add r-doparallel and r-foreach.
2021-06-05 09:12:42 +02:00
d296ac9cde
gnu: r-chipseq: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.42.0.
2021-06-05 09:12:42 +02:00
ca10bafc65
gnu: r-chipseeker: Update to 1.28.3.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.28.3.
[inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:42 +02:00
336107c13d
gnu: r-category: Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-category): Update to 2.58.0.
2021-06-05 09:12:42 +02:00
e039d07bf8
gnu: r-bsgenome: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.60.0.
2021-06-05 09:12:42 +02:00
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gnu: r-biovizbase: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.40.0.
2021-06-05 09:12:42 +02:00
16fe6abd27
gnu: r-biostrings: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.0.
[propagated-inputs]: Add r-genomeinfodb.
2021-06-05 09:12:42 +02:00
3eedef80e4
gnu: r-biocparallel: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.0.
2021-06-05 09:12:41 +02:00
f9ae0a4102
gnu: r-biomart: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.0.
[propagated-inputs]: Remove r-openssl and r-xml2; add r-digest.
2021-06-05 09:12:41 +02:00
8be5d4f6fc
gnu: r-biobase: Update to 2.52.0.
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* gnu/packages/bioconductor.scm (r-biobase): Update to 2.52.0.
2021-06-05 09:12:41 +02:00
baaed6fd68
gnu: r-bamsignals: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.24.0.
2021-06-05 09:12:41 +02:00
3e290768c6
gnu: r-aroma-light: Update to 3.22.0.
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* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.22.0.
2021-06-05 09:12:41 +02:00
2071ed58d5
gnu: r-annotationhub: Update to 3.0.0.
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* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.0.
2021-06-05 09:12:41 +02:00
4d13cf066d
gnu: r-annotationforge: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.0.
2021-06-05 09:12:41 +02:00
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gnu: r-annotationfilter: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.16.0.
2021-06-05 09:12:41 +02:00
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gnu: r-annotationdbi: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.0.
[propagated-inputs]: Add r-keggrest.
2021-06-05 09:12:41 +02:00
1bb87755b8
gnu: r-annotate: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-annotate): Update to 1.70.0.
2021-06-05 09:12:41 +02:00
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gnu: r-affxparser: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.0.
2021-06-05 09:12:41 +02:00
dfeb135ef0
gnu: r-affyio: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-affyio): Update to 1.62.0.
2021-06-05 09:12:41 +02:00
a9083169c6
gnu: r-affycoretools: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.64.0.
2021-06-05 09:12:41 +02:00
3abb0b6523
gnu: r-affycontam: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.50.0.
2021-06-05 09:12:41 +02:00
bd17befeb1
gnu: r-affycompatible: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.52.0.
2021-06-05 09:12:41 +02:00
b045bf2d6f
gnu: r-affycomp: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.68.0.
2021-06-05 09:12:41 +02:00
af04e2cc12
gnu: r-affy: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-affy): Update to 1.70.0.
2021-06-05 09:12:41 +02:00
60b9546472
gnu: r-iranges: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-iranges): Update to 2.26.0.
2021-06-05 09:12:41 +02:00
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gnu: r-ideoviz: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.28.0.
2021-06-05 09:12:40 +02:00
4075ac7287
gnu: r-bluster: Update to 1.2.1.
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* gnu/packages/bioconductor.scm (r-bluster): Update to 1.2.1.
[propagated-inputs]: Add r-cluster.
2021-06-05 09:12:40 +02:00
8eb0c715e3
gnu: r-delayedarray: Update to 0.18.0.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.18.0.
2021-06-05 09:12:40 +02:00
f0f839c124
gnu: r-deepsnv: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:40 +02:00
dec096f827
gnu: r-decipher: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-decipher): Update to 2.20.0.
[propagated-inputs]: Add r-dbi, r-iranges, r-s4vectors, and r-xvector.
2021-06-05 09:12:40 +02:00
116df58449
gnu: r-cummerbund: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.34.0.
2021-06-05 09:12:40 +02:00
e6c5d8ce2c
gnu: r-coverageview: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.30.0.
2021-06-05 09:12:40 +02:00
7bac473d06
gnu: r-biocgenerics: Update to 0.38.0.
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* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.38.0.
2021-06-05 09:12:40 +02:00
b05761a5a9
gnu: r-biocversion: Update to 3.13.1.
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* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.13.1.
2021-06-05 09:12:40 +02:00
405b386656
gnu: r-aneufinder: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.20.0.
2021-06-05 09:12:40 +02:00
75817956c1
gnu: r-hdf5array: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.20.0.
[arguments]: Remove.
[propagated-inputs]: Add r-rhdf5filters.
2021-06-05 09:12:40 +02:00
bfa23ec526
gnu: r-cytoml: Update to 2.4.0.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.4.0.
[arguments]: Remove.
2021-06-05 09:12:40 +02:00
764e2dba20
gnu: r-flowworkspace: Update to 4.4.0.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.4.0.
[arguments]: Remove.
[propagated-inputs]: Add r-delayedarray and r-s4vectors.
2021-06-05 09:12:40 +02:00
b9751b629c
gnu: r-ncdfflow: Update to 2.38.0.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.38.0.
[arguments]: Remove.
2021-06-05 09:12:40 +02:00
5c37a048bb
gnu: r-cytolib: Update to 2.4.0.
...
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.4.0.
[arguments]: Remove.
[native-inputs]: Remove pkg-config.
2021-06-05 09:12:40 +02:00
782d27f77d
gnu: r-rhdf5: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.36.0.
[arguments]: Remove.
2021-06-05 09:12:40 +02:00
87d06a725f
gnu: r-mzr: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
2021-06-05 09:12:40 +02:00
5d13aab6ca
gnu: r-msnid: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.26.0.
[arguments]: Set HOME variable.
2021-06-05 09:12:40 +02:00
d0a7dc0cb6
gnu: r-bioccheck: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.28.0.
[arguments]: Remove.
2021-06-05 09:12:39 +02:00
1b0338d76b
gnu: r-rhdf5lib: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.0.
[source]: Update deletions.
[arguments]: Update substitutions.
[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
2021-06-05 09:12:39 +02:00
53ec97713a
gnu: Add r-metapod.
...
* gnu/packages/bioconductor.scm (r-metapod): New variable.
2021-06-05 09:12:39 +02:00
8caab75883
gnu: Add r-ggtree.
...
* gnu/packages/bioconductor.scm (r-ggtree): New variable.
2021-06-05 09:12:39 +02:00
ab4a91b252
gnu: Add r-treeio.
...
* gnu/packages/bioconductor.scm (r-treeio): New variable.
2021-06-05 09:12:39 +02:00
fd4fa40ac4
gnu: Add r-scaledmatrix.
...
* gnu/packages/bioconductor.scm (r-scaledmatrix): New variable.
2021-06-05 09:12:39 +02:00
efefb2be3a
gnu: Add r-trajectoryutils.
...
* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
2021-06-05 09:12:39 +02:00
ce99b4da63
gnu: Add r-restfulr.
...
* gnu/packages/bioconductor.scm (r-restfulr): New variable.
2021-06-05 09:12:39 +02:00
ab66c9a2cd
gnu: Add r-arrow.
...
* gnu/packages/cran.scm (r-arrow): New variable.
2021-06-05 09:12:39 +02:00
b71f21339f
gnu: Add r-ggpointdensity.
...
* gnu/packages/cran.scm (r-ggpointdensity): New variable.
2021-06-05 09:12:39 +02:00
41ea9bed97
gnu: Add r-ggnewscale.
...
* gnu/packages/cran.scm (r-ggnewscale): New variable.
2021-06-05 09:12:39 +02:00
d5c08f11e1
gnu: Add r-aplot.
...
* gnu/packages/cran.scm (r-aplot): New variable.
2021-06-05 09:12:39 +02:00
f98837a6ba
gnu: pigx-rnaseq: Update to 0.0.13.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
[arguments]: Remove obsolete substitutions.
[inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
2021-06-05 09:12:39 +02:00
7382aa00b8
gnu: python-scanpy: Update to 1.7.2.
...
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.7.2.
2021-06-04 23:51:35 +02:00
e639da604f
gnu: python-anndata: Update to 0.7.6.
...
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6.
2021-06-04 23:51:24 +02:00
29745d23b8
gnu: Use define-public in (gnu packages xiph).
...
* gnu/pakages/xiph.scm: Replace all manual package #:exports with
define-public.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 15:08:35 +02:00
bb934ab79d
gnu: python-pydantic: Update to 1.8.2.
...
* gnu/packages/python-xyz.scm (python-pydantic): Update to 1.8.2.
[arguments]: Disable some new tests.
[native-inputs]: Add PYTHON-PYTEST-MOCK.
[propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS.
2021-06-04 14:57:39 +02:00
1ea00cceef
gnu: wfview: Update to 1.0.
...
* gnu/packages/radio.scm (wfview): Update to 1.0.
2021-06-04 13:50:52 +02:00
f50a88c1fa
gnu: smalltalk: Find glibc even when cross-compiling.
...
glibc is named "cross-libc" instead of "libc" when cross-compiling. Smalltalk
still fails to cross-compile though.
* gnu/packages/smalltalk.scm
(smalltalk)[arguments]{phases}<#:fix-libc>: Also search for
"cross-libc" instead of only "libc" in 'inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:40:02 +02:00
961a8f1302
gnu: smalltalk: Move 'zip' from 'inputs' to 'native-inputs'.
...
The 'zip' package is not in the references of 'smalltalk'.
As such, it probably should be a native input, not a regular
input. This can be confirmed by trying to cross-compile
the 'smalltalk' package, without this commit. The configure
script will ask to install InfoZIP.
* gnu/packages/smalltalk.scm
(smalltalk)[inputs]{zip}: Move to ...
(smalltalk)[native-inputs]{zip} ... here.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:58 +02:00
4a600ada5a
gnu: ding: Use 'inputs' in build phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/dictionaries.scm
(ding)[arguments]<#:phases>{install}: Use 'inputs' argument instead
of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:54 +02:00
156b8f9cd2
gnu: qemacs: Use 'native-inputs' instead of '%build-inputs'.
...
In build phases, the former (or 'inputs', as appropriate) is preferred.
* gnu/packages/text-editors.scm
(qemacs)[arguments]<#:phases>{install-extra-documentation}: Use
'native-inputs' argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:49 +02:00
09be86744f
gnu: neovim: Use 'inputs' in phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/vim.scm
(neovim)[arguments]<#:phases>{set-lua-path}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:46 +02:00
f5f78d0d02
gnu: smalltalk: Use 'inputs' in phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/smalltalk.scm
(smalltalk)[arguments]<#:phases>{fix-libc}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:42 +02:00
8190f5bb97
gnu: ci: Use 'inputs' in build phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/ci.scm
(cuirass)[arguments]<#:phases>{wrap-program}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:37 +02:00
d06ae05808
gnu: Add pigx-sars-cov2-ww.
...
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): New variable.
2021-06-04 12:57:08 +02:00
4f773bc22d
gnu: sbcl-nibbles: Update to 0.14-2.dad2524.
...
* gnu/packages/lisp-xyz.scm (sbcl-nibbles): Update to 0.14-2.dad2524.
2021-06-04 10:59:50 +02:00
f1bfd9f194
gnu: remmina: Update to 1.4.18.
...
* gnu/packages/vnc.scm (remmina)[version]: Update to 1.4.18.
2021-06-03 23:46:04 -04:00
6148172c3e
gnu: gajim-omemo: Update to 2.7.14.
...
* gnu/packages/messaging.scm (gajim-omemo)[version]: Update to 2.7.14.
2021-06-03 23:35:12 -04:00
6b6b87f1c3
gnu: linux-libre 4.4: Update to 4.4.271.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.271.
(linux-libre-4.4-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
6fa18e48a7
gnu: linux-libre 4.9: Update to 4.9.271.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.271.
(linux-libre-4.9-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
ba85dff344
gnu: linux-libre 4.14: Update to 4.14.235.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.235.
(linux-libre-4.14-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
37ec3f3bec
gnu: linux-libre 4.19: Update to 4.19.193.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.193.
(linux-libre-4.19-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
a75aa36e0a
gnu: linux-libre 5.4: Update to 5.4.124.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.124.
(linux-libre-5.4-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
f23d5340c2
gnu: linux-libre 5.10: Update to 5.10.42.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.42.
(linux-libre-5.10-pristine-source): Update hash.
(deblob-scripts-5.10): Update hash.
2021-06-03 22:41:00 -04:00
41d73dfba1
gnu: linux-libre: Update to 5.12.9.
...
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.9.
(linux-libre-5.12-pristine-source): Update hash.
(deblob-scripts-5.12): Update hash.
2021-06-03 22:40:51 -04:00
bb414c9352
gnu: komikku: Update to 0.29.0.
...
* gnu/packages/gnome.scm (komikku): Update to 0.29.0.
2021-06-03 21:46:48 +02:00
97b4a7e37c
gnu: emacs-calibredb: Update to 2.10.0.
...
* gnu/packages/emacs-xyz.scm (emacs-calibredb): Update to 2.10.0.
2021-06-03 21:13:23 +02:00
Ricardo Wurmus
Roel Janssen
Brendan Tildesley
Marius Bakke
Guillaume Le Vaillant
Maxime Devos
Raghav Gururajan
Leo Famulari
Leo Prikler
Nicolas Goaziou