04ec2a15b9
gnu: dehydrated: ‘Build’ reproducibly.
...
* gnu/packages/tls.scm (dehydrated)[arguments]: Invoke gzip with ‘-n’.
2022-10-23 02:00:15 +02:00
4f5e87f751
gnu: dehydrated: Use G-expressions.
...
* gnu/packages/tls.scm (dehydrated)[arguments]:
Rewrite as G-expressions.
2022-10-23 02:00:15 +02:00
019be3f652
gnu: dehydrated: Update to 0.7.0-0.6fb8eba.
...
* gnu/packages/tls.scm (dehydrated): Update to 0.7.0-0.6fb8eba.
[source]: Use GIT-FETCH & GIT-FILE-NAME.
[arguments]: Adjust accordingly. Don't explicitly return #t from phases.
[native-inputs]: Remove tar.
2022-10-23 02:00:15 +02:00
6e7102c5f7
gnu: pinentry-tty: Update to 1.2.1.
...
* gnu/packages/gnupg.scm (pinentry-tty): Update to 1.2.1.
2022-10-23 02:00:15 +02:00
69521e7adc
gnu: goffice: Update to 0.10.53.
...
* gnu/packages/gnome.scm (goffice): Update to 0.10.53.
2022-10-23 02:00:15 +02:00
4674eb5718
gnu: memtest86+: Build reproducibly.
...
* gnu/packages/hardware.scm (memtest86+)[source]: Add patch.
* gnu/packages/patches/memtest86+-build-reproducibly.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-10-23 02:00:15 +02:00
1ea1fa96fe
gnu: Add ndppd.
...
* gnu/packages/admin.scm (ndppd): New variable.
2022-10-29 13:58:45 +02:00
db3c80e8ab
gnu: emacs-nano-modeline: Update to 0.7.2.
...
* gnu/packages/emacs-xyz.scm (emacs-nano-modeline): Update to 0.7.2.
2022-10-29 10:46:21 +02:00
e4fcb6d1b3
gnu: guix-build-coordinator: Update to 0-68.3768aec.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-68.3768aec.
2022-10-29 09:37:43 +01:00
067deee14f
gnu: bzip2: Fix script interpreters when cross-compiling.
...
Add bash-minimal as an input fixes the interpreters for various scripts (like
bzdiff and bzgrep) when cross-compiling.
* gnu/packages/compression.scm (bzip2)[inputs]: Add bash-minimal when cross
compiling.
2022-10-29 09:29:32 +01:00
a0c5f19dc6
gnu: xz: Fix script interpreters when cross-compiling.
...
Add bash-minimal as an input fixes the interpreters for various scripts (like
xzgrep and xzless) when cross-compiling.
* gnu/packages/compression.scm (xz)[inputs]: Add bash-minimal when cross
compiling.
2022-10-29 09:29:32 +01:00
01cfc22700
gnu: gzip: Fix script interpreters when cross-compiling.
...
Add bash-minimal as an input fixes the interpreters for various scripts (like
zcat and zless) when cross-compiling.
* gnu/packages/compression.scm (gzip)[inputs]: Add bash-minimal when cross
compiling.
2022-10-29 09:29:31 +01:00
42c8315316
gnu: gnome-control-center: Update to 42.4.
...
* gnu/packages/gnome.scm (gnome-control-center): Update to 42.4.
2022-10-29 09:28:11 +01:00
0a604c16b3
gnu: Add seer-gdb.
...
* gnu/packages/debug.scm (seer-gdb): New variable.
2022-10-28 21:55:39 +02:00
ed70f80ccd
gnu: texlive-latex-atveryend: Fix typo.
...
* gnu/packages/tex.scm (texlive-latex-atveryend)[description]: Fix incorrectly
pluralized use of "package".
2022-10-28 11:51:00 -07:00
b669735356
gnu: python-rpy2: Update to 3.5.5.
...
* gnu/packages/statistics.scm (python-rpy2): Update to 3.5.5.
[arguments]: Run all tests; run them conditionally.
2022-10-28 20:40:47 +02:00
7797570479
gnu: sed: Skip failing test on GNU/Hurd.
...
* gnu/packages/base.scm (sed)[arguments]: Add #:make-flags.
2022-10-28 15:16:54 +01:00
2a152e1a42
gnu: diffutils: Skip failing test on GNU/Hurd.
...
* gnu/packages/base.scm (diffutils)[arguments]: Add #:make-flags.
* gnu/packages/commencement.scm (diffutils-boot0)[arguments]: Adjust to always
use substitute-keyword-arguments.
2022-10-28 15:16:54 +01:00
fe20121dc7
gnu: Add r-damefinder.
...
* gnu/packages/bioconductor.scm (r-damefinder): New variable.
2022-10-28 15:11:29 +02:00
812cbd9321
gnu: Add r-dama.
...
* gnu/packages/bioconductor.scm (r-dama): New variable.
2022-10-28 15:08:58 +02:00
77a81280b2
gnu: Add ghc-6.6.
...
* gnu/packages/haskell.scm (ghc-6.6): New variable.
2022-10-28 15:00:21 +02:00
171b729005
gnu: ghc-6.0: Adjust configuration.
...
* gnu/packages/haskell.scm (ghc-6.0)[arguments]: Pass --enable-src-tree-happy
option; remove --with-hc option because we use the same GHC for everything;
add --with-gcc option to embed absolute file name of GCC.
[native-inputs]: Remove unused python-2.
2022-10-28 15:00:21 +02:00
65ad002ff1
gnu: ghc-4: Embed absolute file name of GCC in GHC.
...
* gnu/packages/haskell.scm (ghc-4)[arguments]: Pass "--with-gcc" option to
configure script.
2022-10-28 15:00:21 +02:00
75b24abf09
gnu: flair: Update to 1.6.4.
...
* gnu/packages/bioinformatics.scm (flair): Update to 1.6.4.
[propagated-inputs]: Add python-numpy and python-scipy.
2022-10-28 15:00:21 +02:00
bb4f24b3ae
gnu: flair: Set R_HOME.
...
* gnu/packages/bioinformatics.scm (flair)[arguments]: Set R_HOME.
2022-10-28 15:00:21 +02:00
28950ed561
gnu: flair: Add missing R package.
...
* gnu/packages/bioinformatics.scm (flair)[inputs]: Add r-apeglm.
2022-10-28 15:00:20 +02:00
917b96cef7
gnu: Add r-debcam.
...
* gnu/packages/bioconductor.scm (r-debcam): New variable.
2022-10-28 15:00:20 +02:00
0d713c865b
gnu: Add r-dmwr2.
...
* gnu/packages/cran.scm (r-dmwr2): New variable.
2022-10-28 15:00:16 +02:00
7d92434326
gnu: emacs-modus-themes: Update to 3.0.0.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 3.0.0.
2022-10-28 11:16:08 +02:00
575790f5f5
gnu: emacs-ediprolog: Update to 2.2.
...
* gnu/packages/emacs-xyz.scm (emacs-ediprolog): Update to 2.2.
2022-10-28 11:16:07 +02:00
a31c653cb1
gnu: emacs-subed: Update to 1.0.16.
...
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.16.
2022-10-28 11:16:07 +02:00
8b204f4e94
gnu: emacs-mmm-mode: Update to 0.5.9.
...
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.9.
2022-10-28 11:16:07 +02:00
5b86417d91
gnu: emacs-ement: Update to 0.4.1.
...
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.4.1.
2022-10-28 11:16:06 +02:00
652c5d8a01
gnu: r-mixedpower: Fix faulty commit.
...
Fix previous commit, which did not contain the following changes:
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r-mixedpower)[source]: Use it.
2022-10-28 10:17:55 +02:00
328fa8b290
gnu: icedove: Update to 102.4.1.
...
* gnu/packages/gnuzilla.scm (%icedove-build-id, %icedove-version) Update to 102.4.1.
2022-10-28 10:02:35 +02:00
332568d3e8
gnu: r-mixedpower: Improve compatibility with R>=4.2.
...
Upstream’s fix is incomplete and thus commit
7871447cf5
2022-10-28 09:59:11 +02:00
3511ad2857
gnu: rottlog: Apply patch adding a Texinfo direntry.
...
Relates to <https://issues.guix.gnu.org/58821 >.
* gnu/packages/patches/rottlog-direntry.patch: Add patch.
* gnu/packages/admin.scm (rottlog): Apply it.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-10-27 23:34:46 -04:00
ff097b450b
gnu: rottlog: Use gexps and bootstrap Autotools build system.
...
* gnu/packages/admin.scm (rottlog) [snippet]: Delete build system files.
Delete trailing #t. Patch Makefile.am instead of Makefile.in. Do not patch
INSTALL_RC and INSTALL_SCRIPT variables default values.
[arguments]: Use gexps. Delete trailing #t.
[make-flags]: Override INSTALL_RC and INSTALL_SCRIPT.
[phases]{fix-configure}: Delete phase.
[native-inputs]: Add autoconf. Sort inputs.
2022-10-27 23:34:46 -04:00
e04baf43ab
gnu: linux-libre: Update to 5.19.17.
...
* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.17.
(linux-libre-5.19-pristine-source): Update hash.
2022-10-27 21:02:02 -04:00
d520fdec3c
gnu: findutils: Skip failing test on GNU/Hurd.
...
* gnu/packages/base.scm (findutils)[arguments]: Add #:make-flags.
* gnu/packages/commencement.scm (findutils-boot0)[arguments]: Likewise.
2022-10-28 01:27:22 +02:00
6c16eb24d1
gnu: grep: Skip failing tests on GNU/Hurd.
...
* gnu/packages/base.scm (grep)[arguments]: Add #:make-flags.
2022-10-28 01:27:22 +02:00
842b73fd2b
gnu: coreutils: Skip failing tests on GNU/Hurd.
...
* gnu/packages/base.scm (coreutils)[arguments]: Add
"tests/df/unreadable.sh" and "test-perror2" to the 'XFAIL_TESTS' list.
2022-10-28 01:27:21 +02:00
ac51b9c86d
gnu: swftools: Fix typos.
...
* gnu/packages/animation.scm (swftools)[description]: Avoid uses of "allows
to".
2022-10-27 14:13:17 -07:00
f8ce707252
gnu: pypy: Remove unused module imports.
...
This is a follow-up to commit 6e7ed04033
2022-10-27 21:38:56 +02:00
e944734ef9
build-system/pyproject: Always run tests verbosely for supported backends.
...
* guix/build-system/pyproject.scm (pyproject-build): Default to '() instead of
#false for TEST-FLAGS.
* guix/build/pyproject-build-system.scm (check): Unconditionally enable
verbose test flags.
* doc/guix.texi (Build Systems): Document this change.
* gnu/packages/fontutils.scm (python-glyphslib)[arguments]: Remove verbosity
from #:test-flags.
* gnu/packages/pdf.scm (python-pydyf, weasyprint)[arguments]: Likewise.
* gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]: Likewise.
* gnu/packages/python-xyz.scm (python-path, python-tempora)[arguments]: Likewise.
2022-10-27 21:30:03 +02:00
f928abac36
gnu: python-deepmerge: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-deepmerge)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:08 +02:00
7b83b3a77c
gnu: python-scikit-build: Switch to pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-scikit-build)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:08 +02:00
9ffbcb8a06
gnu: python-cattrs: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-cattrs)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
d2e88c383b
gnu: python-path: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-path-bootstrap)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
(python-path): Remove #:phases. Add #:test-flags.
2022-10-27 19:43:08 +02:00
5e17453f18
gnu: python-openapi-spec-validator: Use pyproject-build-system.
...
* gnu/packages/python-web.scm (python-openapi-spec-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
3c685772de
gnu: python-openapi-schema-validator: Use pyproject-build-system.
...
* gnu/packages/python-web.scm (python-openapi-schema-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
7b499ef116
gnu: zabbix-cli: Switch to pyproject-build-system.
...
* gnu/packages/monitoring.scm (zabbix-cli)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove check phase.
2022-10-27 19:43:08 +02:00
e05e2a7a75
gnu: python-pygmsh: Use pyproject-build-system.
...
* gnu/packages/simulation.scm (python-pygmsh)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
b8efe89eb4
gnu: python-tempora: Switch to pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-tempora)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
8bdc4c1547
gnu: python-mypy-protobuf: Switch to pyproject-build-system.
...
* gnu/packages/protobuf.scm (python-mypy-protobuf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
eecc807ea4
gnu: python-ufolib2: Use pyproject-build-system.
...
* gnu/packages/fontutils.scm (python-ufolib2)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:07 +02:00
10f8534929
gnu: python-statmake: Use pyproject-build-system.
...
* gnu/packages/fontutils.scm (python-statmake)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
6f6257a6bc
gnu: python-glyphslib: Use pyproject-build-system.
...
* gnu/packages/fontutils.scm (python-glyphslib)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:07 +02:00
df095a1813
gnu: weasyprint: Use pyproject-build-system.
...
* gnu/packages/pdf.scm (weasyprint)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases. Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
4c8e0b3274
gnu: python-pydyf: Use pyproject-build-system.
...
* gnu/packages/pdf.scm (python-pydyf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases. Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
ee1f51011c
gnu: python-autopage: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-autopage)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
2022-10-27 19:43:07 +02:00
400a7a4c80
build-system: Add pyproject-build-system.
...
This is an experimental build system based on python-build-system
that implements PEP 517-compliant builds.
* doc/guix.texi (Build Systems): Add pyproject-build-system section.
* doc/contributing.texi (Python Modules): Mention pyproject.toml and the
PYTHON-TOOLCHAIN package, as well as differences to python-build-system.
* guix/build-system/pyproject.scm,
guix/build/pyproject-build-system.scm,
gnu/packages/aux-files/python/sanity-check-next.py,
gnu/packages/python-commencement.scm: New files.
* Makefile.am (MODULES): Register the new build systems.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add python-commencement.scm.
* gnu/packages/python.scm (python-sans-pip, python-sans-pip-wrapper): New
variables.
Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
b4e2effb30
gnu: python-pip: Move to (gnu packages python-build).
...
* gnu/packages/python-xyz.scm (python-pip): Move from here ...
* gnu/packages/python-build.scm (python-pip): ... to here.
2022-10-27 19:43:06 +02:00
6e7ed04033
gnu: pypy: Move to separate module.
...
This removes the need to import (gnu packages python-xyz) in (gnu packages
python), avoiding issues with circular imports.
* gnu/packages/python.scm (pypy): Move…
* gnu/packages/pypy.scm (pypy): …here
* gnu/local.mk: Register new file.
Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
c485a9d8af
gnu: python-setuptools: Move to python-build.
...
* gnu/packages/python-xyz.scm (python-setuptools): Move…
* gnu/packages/python-build.scm: …here.
* gnu/packages/chemistry.scm,
gnu/packages/messaging.scm,
gnu/packages/sequoia.scm,
tests/lint.scm: Adjust module imports accordingly.
Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
cae327a3b0
gnu: Zabbix: Update to 6.0.9.
...
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.9.
2022-10-27 19:43:06 +02:00
593548f063
gnu: zabbix-agentd: Enable TLS support.
...
* gnu/packages/monitoring.scm (zabbix-agentd)[arguments]: Pass "--with-gnutls"
in #:configure-flags.
[inputs]: Add GNUTLS.
(zabbix-server): Inherit these changes.
2022-10-27 19:43:06 +02:00
176a501360
gnu: flair: Add missing R packages.
...
* gnu/packages/bioinformatics.scm (flair)[propagated-inputs]: Add python-rpy2.
[inputs]: Add r-minimal, r-deseq2, r-drimseq, r-ggplot2, r-lazyeval, r-qqman,
and r-rlang.
[arguments]: Add phase "wrap-executable".
2022-10-27 18:21:22 +02:00
302eae2fc3
gnu: emacs-buttercup: Update to 1.28.
...
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.28.
2022-10-27 17:37:40 +02:00
aef2425666
gnu: Add r-aseb.
...
* gnu/packages/bioconductor.scm (r-aseb): New variable.
2022-10-27 16:40:18 +02:00
695d7720ef
gnu: Add r-asgsca.
...
* gnu/packages/bioconductor.scm (r-asgsca): New variable.
2022-10-27 16:40:18 +02:00
b8b91756ab
gnu: Add r-aspli.
...
* gnu/packages/bioconductor.scm (r-aspli): New variable.
2022-10-27 16:40:18 +02:00
a8e0069f87
gnu: Add r-assessorf.
...
* gnu/packages/bioconductor.scm (r-assessorf): New variable.
2022-10-27 16:40:18 +02:00
f1750236c1
gnu: Add r-asset.
...
* gnu/packages/bioconductor.scm (r-asset): New variable.
2022-10-27 16:40:18 +02:00
c0278aa51e
gnu: Add r-atena.
...
* gnu/packages/bioconductor.scm (r-atena): New variable.
2022-10-27 16:40:18 +02:00
70d30096b3
gnu: Add r-atsnp.
...
* gnu/packages/bioconductor.scm (r-atsnp): New variable.
2022-10-27 16:40:18 +02:00
599655dc49
gnu: Add r-attract.
...
* gnu/packages/bioconductor.scm (r-attract): New variable.
2022-10-27 16:40:18 +02:00
3f755098cb
gnu: Add r-awfisher.
...
* gnu/packages/bioconductor.scm (r-awfisher): New variable.
2022-10-27 16:40:18 +02:00
930b1e0458
gnu: Add r-awst.
...
* gnu/packages/bioconductor.scm (r-awst): New variable.
2022-10-27 16:40:18 +02:00
d9686315bd
gnu: ungoogled-chromium: Update to 107.0.5304.68-1.
...
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M107.
(%chromium-version): Set to 107.0.5304.68.
(%ungoogled-origin): Update hash.
(%chromium-gcc-patchset, gcc-patch): Remove.
(%gcc-patches): Empty list.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Add clang_base_path and use_system_libwayland_server to
#:configure-flags. Adjust substitutions.
[inputs]: Add QTBASE-5.
2022-10-27 16:15:09 +02:00
38cc09493c
gnu: Add r-barcodetrackr.
...
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
2022-10-27 15:58:45 +02:00
01944e0eb8
gnu: Add r-banocc.
...
* gnu/packages/bioconductor.scm (r-banocc): New variable.
2022-10-27 15:57:30 +02:00
fe2be9c0cf
gnu: Add r-bandits.
...
* gnu/packages/bioconductor.scm (r-bandits): New variable.
2022-10-27 15:56:40 +02:00
9b337c2735
gnu: Add r-bambu.
...
* gnu/packages/bioconductor.scm (r-bambu): New variable.
2022-10-27 15:51:55 +02:00
f0d0b6a0c5
gnu: Add r-badregionfinder.
...
* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
2022-10-27 15:50:33 +02:00
c969517cec
gnu: Add r-bader.
...
* gnu/packages/bioconductor.scm (r-bader): New variable.
2022-10-27 15:35:22 +02:00
0ad89a84c3
gnu: Add r-bac.
...
* gnu/packages/bioconductor.scm (r-bac): New variable.
2022-10-27 15:34:01 +02:00
f31b494bb6
gnu: Add r-basespacer.
...
* gnu/packages/bioconductor.scm (r-basespacer): New variable.
2022-10-27 15:30:25 +02:00
3417a28080
gnu: Add r-eulerr.
...
* gnu/packages/cran.scm (r-eulerr): New variable.
2022-10-27 15:28:22 +02:00
9f8ab16fb5
gnu: Add r-tximportdata.
...
* gnu/packages/bioconductor.scm (r-tximportdata): New variable.
2022-10-27 15:24:06 +02:00
f180a5990b
gnu: Add r-fishpond.
...
* gnu/packages/bioconductor.scm (r-fishpond): New variable.
2022-10-27 15:19:36 +02:00
fe7b421d05
gnu: Add python-multivelo.
...
* gnu/packages/bioinformatics.scm (python-multivelo): New variable.
2022-10-27 15:15:19 +02:00
358a1fdf7b
gnu: Add r-seuratwrappers.
...
* gnu/packages/bioinformatics.scm (r-seuratwrappers): New variable.
2022-10-27 15:03:21 +02:00
87763421a9
gnu: r-seurat: Update to 4.2.0.
...
* gnu/packages/cran.scm (r-seurat): Update to 4.2.0.
2022-10-27 15:03:21 +02:00
1cc12eace3
gnu: r-seuratobject: Update to 4.1.2.
...
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.2.
2022-10-27 15:03:21 +02:00
4b9fa56cad
gnu: Add r-baalchip.
...
* gnu/packages/bioconductor.scm (r-baalchip): New variable.
2022-10-27 13:54:18 +02:00
8e6a9b23d0
gnu: Add python-jupytext.
...
* gnu/packages/python-xyz.scm (python-jupytext): New variable.
2022-10-27 13:25:15 +02:00
c28598db5b
gnu: Add python-mdit-py-plugins.
...
* gnu/packages/python-xyz.scm (python-mdit-py-plugins): New variable.
2022-10-27 13:25:15 +02:00
447400c853
gnu: Add python-markdown-it-py.
...
* gnu/packages/python-xyz.scm (python-markdown-it-py): New variable.
2022-10-27 13:25:15 +02:00
d748d4fd6c
gnu: Add python-mdurl.
...
* gnu/packages/python-xyz.scm (python-mdurl): New variable.
2022-10-27 13:25:15 +02:00
be51ee7ced
gnu: Add ghc-6.0.
...
* gnu/packages/haskell.scm (ghc-6.0): New variable.
2022-10-27 13:25:15 +02:00
82791af033
gnu: ghc-4: Build full compiler using provided *.hc files.
...
* gnu/packages/haskell.scm (ghc-4)[source]: Remove patch.
[arguments]: Change to build full compiler.
[native-inputs]: Remove default binutils and gcc; add tarball for hc files.
* gnu/packages/patches/ghc-4.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-10-27 13:25:15 +02:00
bbaf3bcb45
gnu: python-afdko: Skip a test.
...
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Adjust custom
'check phase to skip a test.
2022-10-27 14:13:52 +03:00
95d44c0586
gnu: Add emacs-clj-refactor.
...
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): New variable.
2022-10-27 09:27:40 +04:00
39dfa2947f
gnu: Add emacs-inflections.
...
* gnu/packages/emacs-xyz.scm (emacs-inflections): New variable.
2022-10-27 09:18:53 +04:00
5dda4c69f0
gnu: xorriso: Update to 1.5.4.
...
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.4.
2022-10-23 02:00:07 +02:00
df5cbe529b
gnu: sudo: Update to 1.9.12.
...
* gnu/packages/admin.scm (sudo): Update to 1.9.12.
2022-10-23 02:00:07 +02:00
188acd0aac
gnu: mpv: Prepare for cross-compilation.
...
* gnu/packages/video.scm (mpv)[arguments]: Use CC-FOR-TARGET.
2022-10-23 02:00:07 +02:00
9eea2db6ae
gnu: mpv: Use G-expressions.
...
* gnu/packages/video.scm (mpv)[arguments]:
Rewrite as G-expressions.
2022-10-23 02:00:06 +02:00
51aac125f0
gnu: mpv: Remove input labels.
...
* gnu/packages/video.scm (mpv)[inputs]: Remove input labels.
[arguments]: Use SEARCH-INPUT-FILE instead.
2022-10-23 02:00:06 +02:00
32be0431ff
gnu: mpv: Remove trailing #t from phases.
...
* gnu/packages/video.scm (mpv)[arguments]: Don't explicitly return #t
from phases.
2022-10-23 02:00:06 +02:00
19f3dbcb4d
system: Support bare-bones serial console.
...
* gnu/system/examples/bare-bones.tmpl (operating-system):
Add a ttyS0 console to kernel-arguments.
2022-10-23 02:00:06 +02:00
68f4b7a158
gnu: memtest86+: Include a GRUB-based ISO image.
...
* gnu/packages/hardware.scm (memtest86+)[arguments]: Add a new 'patch-broken-Makefiles and custom 'build phase.
Add "grub-memtest.iso" to the list of files to 'install.
[native-inputs]: Add dosfstools, grub-hybrid, mtools, and xorriso.
2022-10-23 02:00:06 +02:00
634f7cd7df
gnu: memtest86+: Use G-expressions.
...
* gnu/packages/hardware.scm (memtest86+)[arguments]:
Rewrite as G-expressions.
2022-10-23 02:00:06 +02:00
e940828ccf
gnu: memtest86+: Update to 6.00.
...
* gnu/packages/hardware.scm (memtest86+): Update to 6.00.
[source]: Use GIT-FETCH & GIT-FILE-NAME.
[arguments]: Stop forcing #:system i686-linux. Instead, honour the
target word size in a new 'enter-build-directory phase.
Remove custom 'build phase: ‘memtest’ was replaced by ‘memtest.efi’.
Adjust the 'install phase accordingly, and install only ‘README.md’.
[native-inputs]: Remove gcc-4.9.
[description]: Remove obsolete BIOS limitation.
2022-10-23 02:00:06 +02:00
75bf5dac2e
gnu: mu: Update to 1.8.11.
...
* gnu/packages/mail.scm (mu): Update to 1.8.11.
2022-10-23 02:00:05 +02:00
c07b55eb94
gnu: oil: Update to 0.12.7.
...
* gnu/packages/shells.scm (oil): Update to 0.12.7.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26 18:09:10 +03:00
7ffb31d270
gnu: git-remote-gcrypt: Update to 1.5.
...
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.5.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26 18:09:09 +03:00
abec1f8b29
gnu: git-crypt: Update to 0.7.0.
...
* gnu/packages/version-control.scm (git-crypt): Update to 0.7.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26 18:09:09 +03:00
594a243f1d
gnu: qpwgragh: Update to 0.3.7.
...
* gnu/packages/audio.scm (qpwgragh): Update to 0.3.7.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26 18:09:05 +03:00
748684237c
gnu: komikku: Update to 1.2.0.
...
* gnu/packages/gnome.scm (komikku): Update to 1.2.0.
[inputs]: Add ‘python-rarfile’.
2022-10-26 14:18:38 +02:00
ec74eef890
gnu: tinmop: Update to 0.9.9.
...
* gnu/packages/web-browsers.scm (tinmop): Update to 0.9.9.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-10-26 11:12:46 +02:00
d816693a23
gnu: five-or-more: Fix build.
...
* gnu/packages/gnome.scm (five-or-more)[inputs]: Replace
libgnome-games-support with libgnome-games-support-1.
2022-10-26 11:35:15 +03:00
cbc1f75418
gnu: xpad: Fix build.
...
* gnu/packages/gnome.scm (xpad)[inputs]: Add gtk+. Replace gtksourceview
with gtksourceview-4.
2022-10-26 11:33:32 +03:00
d409a83e7c
gnu: rust-git2: Adjust inputs.
...
* gnu/packages/crates-io.scm (rust-git2-0.15)[inputs]: Replace
libgit2-1.3 with libgit2.
(rust-git2-0.13)[inputs]: Continue with libgit2-1.3.
2022-10-26 11:25:40 +03:00
166da5b2b6
Merge remote-tracking branch 'origin/staging'
2022-10-26 11:15:22 +03:00
ab7f79dfc3
gnu: emacs-projectile: Update to 2.6.0.
...
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.6.0.
2022-10-26 09:07:54 +02:00
6ff203663e
Merge remote-tracking branch 'origin/master' into staging
2022-10-25 21:50:59 +03:00
6c5c464d55
gnu: emacs-git-gutter: Update to 0.92-0.ec28e85.
...
0.92 fails on recent emacs versions because of missing global-linum-mode.
* gnu/packages/emacs-xyz.scm (emacs-git-gutter): Update to 0.92-0.ec28e85.
2022-10-25 22:39:15 +04:00
a0751e3250
gnu: guile-chickadee: Update to 0.9.0.
...
* gnu/packages/game-development.scm (guile-chickadee): Update to 0.9.0.
2022-10-25 09:36:44 -04:00
348f70b9f4
gnu: plover: Update to 4.0.0.dev12.
...
* gnu/packages/stenography.scm (plover): Update to 4.0.0.dev12.
[arguments]<#:phases>: Add phase to properly run tests, and skip failing one.
[native-inputs]: Add PYTHON-BABEL, PYTHON-MOCK, PYTHON-PYTEST-QT,
PYTHON,PYTEST-XVFB.
[inputs]: Remove PYTHON-PYQT, PYTHON-BABEL. Add PYTHON-PLOVER-STROKE,
PYTHON-PYQT, PYTHON-RTF-TOKENIZE, QTSVG-5.
(python-plover-stroke): New variable.
2022-10-25 13:57:33 +02:00
743e5adf47
gnu: Add python-rtf-tokenize.
...
* gnu/packages/python-xyz.scm (python-rtf-tokenize): New variable.
2022-10-25 13:57:32 +02:00
822166ac31
gnu: emacs-git-gutter-fringe: Update to 0.23-2.648cb5b.
...
* gnu/packages/emacs-xyz.scm (emacs-git-gutter-fringe): Update to
0.23-2.648cb5b.
2022-10-25 14:20:36 +04:00
d7b8c03a70
gnu: emacs-subed: Update to 1.0.12.
...
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.12.
2022-10-25 12:01:42 +02:00
2f6cc86f40
gnu: emacs-csound-mode: Improve package style.
...
* gnu/packages/emacs-xyz.scm (emacs-csound-mode)[arguments]: Use
G-expressions.
<phases>: Use MAKE-FILE-WRITABLE instead of CHMOD. Remove trailing #T.
[description]: Use complete sentences.
2022-10-25 12:01:42 +02:00
861a6f7f46
gnu: emacs-csound-mode: Update to 0.2.3.
...
* gnu/packages/emacs-xyz.scm (emacs-csound-mode): Update to 0.2.3.
[inputs]: Remove EMACS-HIGHLIGHT, EMACS-MULTI, EMACS-SHUT-UP.
[propagated-inputs]: Add EMACS-DASH, EMACS-HIGHLIGHT, EMACS-MULTI,
EMACS-SHUT-UP.
2022-10-25 12:01:42 +02:00
9b086a1cd7
gnu: emacs-highlight: Update to 0-2.24366df.
...
* gnu/packages/emacs-xyz.scm (emacs-highlight): Update to 0-2.24366df.
[version]: Use GIT-VERSION.
2022-10-25 12:01:41 +02:00
a2f6900761
gnu: gron: Update to 0.7.1
...
* gnu/packages/golang.scm (gron): Update to 0.7.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-25 10:29:10 +01:00
92d2cb0f2b
gnu: go-github-com-sabhiram-go-gitignore: 1.0.2-1.525f6e1.
...
* gnu/packages/golang.scm (go-github-com-sabhiram-go-gitignore): Update to
1.0.2-1.525f6e1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-25 10:19:45 +01:00
793491db0f
gnu: guix: Update to 682639c.
...
This should fix the guix package building on powerpc64le-linux.
* gnu/packages/package-management.scm (guix): Update to 682639c
2022-10-25 10:17:55 +01:00
682639c107
installer: welcome: Warn when uvesafb gets used.
...
There will be false positives: Because the Guix installer uses the
kernel argument modprobe.blacklist=radeon,amdgpu and some AMD graphics
actually work okay according to h-node, these users will get a
false alarm.
* gnu/installer/newt/welcome.scm (run-welcome-page): Warn before showing
the welcome page.
2022-10-25 10:55:33 +02:00
3f0ea68177
gnu: font-gnu-unifont: Build from source.
...
* gnu/packages/fonts.scm (font-gnu-unifont)[source]: Add snippet to
remove precompiled fonts.
[arguments]: Add make-flag to build fonts. Add custom phase to adjust
shell invocations.
[native-inputs]: Add bdftopcf, console-setup, fontforge.
[inputs]: Add perl-gd.
2022-10-25 09:26:12 +03:00
81c6a28eb0
gnu: font-gnu-unifont: Update to 15.0.01.
...
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 15.0.01.
[arguments]: Adjust custom 'install phase to set install directory for
OTF fonts.
2022-10-25 09:26:11 +03:00
75d4abf2eb
gnu: console-font: Install bdf2psf.
...
* gnu/packages/xorg.scm (console-font)[arguments]: Add custom
'install-bdf2psf phase to install bdf2psf and its manpage.
2022-10-25 09:26:11 +03:00
dec9cb985c
gnu: gama: Update to 2.23.
...
* gnu/packages/gps.scm (gama): Update to 2.23.
2022-10-25 09:26:11 +03:00
0224aa2a71
gnu: freeipmi: Update to 1.6.10.
...
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.10.
2022-10-25 09:26:11 +03:00
d6f11bec0f
gnu: gnuastro: Update to 0.19.
...
* gnu/packages/astronomy.scm (gnuastro): Update to 0.19.
2022-10-25 09:26:07 +03:00
a2e4e3489b
gnu: Various typo fixes.
...
* gnu/packages/emacs-xyz.scm (emacs-popup-kill-ring)[description]: Fix very
sneaky "This packages" variant. Thanks to nckhexen!
* gnu/packages/bioinformatics.scm (r-icellnet)[description]: Fix use of
"allows to".
* gnu/packages/check.scm (python-pytest-freezegun)[description]: Ditto.
* gnu/packages/linux.scm (tp-smapi-module)[description]: Ditto.
* gnu/packages/mail.scm (procmail): Ditto.
* gnu/packages/maths.scm (maxima): Ditto.
* gnu/packages/samba.scm (wsdd)[description]: Ditto.
* gnu/packages/ssh.scm (openssh): Ditto.
2022-10-24 17:35:19 -07:00
966118da71
gnu: version-control: Add make-gitolite procedure.
...
* gnu/packages/version-control.scm (make-gitolite): New procedure.
(gitolite): Use make-gitolite.
* doc/guix.texi (Gitolite service): Document how to use make-gitolite.
2022-10-24 16:37:22 -04:00
8663be6da7
gnu: Add sumo.
...
* gnu/packages/simulation.scm (sumo): New variable.
2022-10-24 20:31:34 +02:00
Tobias Geerinckx-Rice
Guillaume Le Vaillant
Nicolas Goaziou
Christopher Baines
Danny Milosavljevic
Vagrant Cascadian
Ricardo Wurmus
Mădălin Ionel Patrașcu
Lars-Dominik Braun
Jonathan Brielmaier
Maxim Cournoyer
Leo Famulari
Ludovic Courtès
Marius Bakke
Hong.Li@mdc-berlin.de
Efraim Flashner
Andrew Tropin
Felix Gruber
Michael Rohleder
ギャラ
Liliana Marie Prikler
cage
David Thompson
Greg Hogan
Felix Lechner
pelzflorian (Florian Pelz)