3f717354d4
gnu: Git: Update to 2.26.1 [fixes CVE-2020-5260].
...
* gnu/packages/version-control.scm (git): Update to 2.26.1.
[native-inputs]: Update git-manpages.
2020-04-15 01:54:49 -04:00
8aa752ba22
services: shepherd: Increase the PID file timeout to 30s.
...
When running the installation image off a DVD, early I/O operations are
extremely slow, to the point that something like dbus-daemon would need
~20s to start. This change works around the issue.
Fixes <https://bugs.gnu.org/40572 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/services/shepherd.scm (shepherd-configuration-file): Set
%pid-file-timeout to 30.
2020-04-15 00:02:23 +02:00
06e48de57e
gnu: emacs-helm-ag: Update to 0.59.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Update to 0.59.
2020-04-14 22:54:34 +02:00
2e3d5fdf05
gnu: cook: Fix test failure.
...
* gnu/packages/cook.scm (cook)[arguments]: Override LC_ALL for one test.
2020-04-14 22:48:52 +02:00
671dba6566
gnu: python-pyrsistent: Update to 0.16.0.
...
* gnu/packages/python-xyz.scm (python-pyrsistent): Update to 0.16.0.
2020-04-14 22:48:51 +02:00
83031dee87
gnu: python-gssapi: Update to 1.6.5.
...
* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.6.5.
2020-04-14 22:48:51 +02:00
c0b6bb23c1
gnu: python-parso: Update to 0.7.0.
...
* gnu/packages/python-xyz.scm (python-parso): Update to 0.7.0.
2020-04-14 22:48:51 +02:00
a4dd5955b3
gnu: mksh: Update to 58.
...
* gnu/packages/shells.scm (mksh): Update to 58.
2020-04-14 20:23:22 +02:00
eaa668ddda
gnu: txr: Update to 235.
...
* gnu/packages/lisp.scm (txr): Update to 235.
[arguments]: Cosmetic shortening.
2020-04-14 20:23:22 +02:00
92e52d25ad
gnu: txr: Call ./configure manually instead of patching.
...
* gnu/packages/lisp.scm (txr)[source]: Remove patch.
[arguments]: Add ‘--prefix’ to #:configure-flags.
Use a custom ‘configure’ phase.
* gnu/packages/patches/txr-shell.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-04-14 20:23:21 +02:00
c3f88d4f34
gnu: txr: Declare test target.
...
* gnu/packages/lisp.scm (txr)[arguments]: Use #:test-target instead of
a trivial custom ‘check’ phase.
2020-04-14 20:23:21 +02:00
8aa0d29d3e
gnu: i2pd: Update to 2.31.0.
...
* gnu/packages/i2p.scm (i2pd): Update to 2.31.0.
2020-04-14 20:23:21 +02:00
d9b9989a5b
gnu: strongswan: Update to 5.8.4.
...
* gnu/packages/networking.scm (strongswan): Update to 5.8.4.
2020-04-14 20:23:21 +02:00
d94271f9ca
gnu: python-podcastparser: Update to 0.6.5.
...
* gnu/packages/gpodder.scm (python-podcastparser): Update to 0.6.5.
2020-04-14 17:33:12 +02:00
49f8912bca
gnu: man-pages: Update to 5.06.
...
* gnu/packages/man.scm (man-pages): Update to 5.06.
2020-04-14 17:33:11 +02:00
0fc1feec2e
gnu: x265: Update to 3.3.
...
* gnu/packages/video.scm (x265): Update to 3.3.
2020-04-14 17:33:11 +02:00
9536367ca0
gnu: r-glue: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.4.0.
[native-inputs]: Add commment explaining why r-knitr is not an input.
2020-04-14 16:41:01 +02:00
3707efe4e1
gnu: r-rcpparmadillo: Update to 0.9.860.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.860.2.0.
[native-inputs]: Remove r-knitr, r-rmarkdown, ghc-pandoc, and
ghc-pandoc-citeproc.
2020-04-14 16:41:01 +02:00
9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
2020-04-14 16:41:01 +02:00
f4be4995d6
gnu: r-a4base: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
2020-04-14 16:41:01 +02:00
851081bf34
gnu: r-varianttools: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
2020-04-14 16:41:01 +02:00
64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
2020-04-14 16:41:00 +02:00
1971d11db9
gnu: r-delayedarray: Update to 0.12.3.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.3.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
679609e179
gnu: r-s4vectors: Update to 0.24.4.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4.
2020-04-14 16:41:00 +02:00
79759bc427
gnu: r-httpcode: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-httpcode): Update to 0.3.0.
2020-04-14 16:41:00 +02:00
e9962d8a6b
gnu: r-isoband: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-isoband): Update to 0.2.1.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
5c819cd214
gnu: r-anthropometry: Update to 1.14.
...
* gnu/packages/cran.scm (r-anthropometry): Update to 1.14.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
172fea2c0a
gnu: r-lhs: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-lhs): Update to 1.0.2.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
cee6e12acf
gnu: r-txtplot: Update to 1.0-4.
...
* gnu/packages/cran.scm (r-txtplot): Update to 1.0-4.
2020-04-14 16:41:00 +02:00
72db4e234d
gnu: r-parameters: Update to 0.6.1.
...
* gnu/packages/cran.scm (r-parameters): Update to 0.6.1.
2020-04-14 16:41:00 +02:00
2274df5ae7
gnu: r-sf: Update to 0.9-1.
...
* gnu/packages/cran.scm (r-sf): Update to 0.9-1.
2020-04-14 16:41:00 +02:00
e515dd6068
gnu: r-spdata: Update to 0.3.5.
...
* gnu/packages/cran.scm (r-spdata): Update to 0.3.5.
2020-04-14 16:41:00 +02:00
b05caf7080
gnu: r-classint: Update to 0.4-3.
...
* gnu/packages/cran.scm (r-classint): Update to 0.4-3.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
43594ac04a
gnu: r-lemon: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-lemon): Update to 0.4.4.
[propagated-inputs]: Add r-rlang.
2020-04-14 16:40:59 +02:00
e1e73f6b0e
gnu: r-compositions: Update to 1.40-5.
...
* gnu/packages/cran.scm (r-compositions): Update to 1.40-5.
2020-04-14 16:40:59 +02:00
96cda4517d
gnu: r-lmertest: Update to 3.1-2.
...
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-2.
2020-04-14 16:40:59 +02:00
708ef6247f
gnu: r-usethis: Update to 1.6.0.
...
* gnu/packages/cran.scm (r-usethis): Update to 1.6.0.
[propagated-inputs]: Remove r-clisymbols; add r-cli and r-rematch2.
2020-04-14 16:40:59 +02:00
10ce5ca824
gnu: r-fs: Update to 1.4.1.
...
* gnu/packages/cran.scm (r-fs): Update to 1.4.1.
2020-04-14 16:40:59 +02:00
dceb9a702b
gnu: r-effectsize: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.0.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
50df1d7b37
gnu: r-multcomp: Update to 1.4-13.
...
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-13.
2020-04-14 16:40:59 +02:00
4bfa2b2536
gnu: r-survey: Update to 4.0.
...
* gnu/packages/cran.scm (r-survey): Update to 4.0.
2020-04-14 16:40:59 +02:00
7ab2b36ffb
gnu: r-sjmisc: Update to 2.8.4.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.4.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
3552a8dfe4
gnu: r-arules: Update to 1.6-5.
...
* gnu/packages/cran.scm (r-arules): Update to 1.6-5.
2020-04-14 16:40:59 +02:00
3343ec5262
gnu: r-xfun: Update to 0.13.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.13.
[native-inputs]: Add comment about not adding r-knitr.
2020-04-14 16:40:59 +02:00
f14664aa5f
gnu: r-rcpp: Update to 1.0.4.6.
...
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.4.6.
2020-04-14 16:40:59 +02:00
2e47488c72
gnu: r-lubridate: Update to 1.7.8.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8.
[propagated-inputs]: Remove r-stringr; add r-generics.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
b493e5aba8
gnu: r-cairo: Update to 1.5-12.
...
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.
2020-04-14 16:40:58 +02:00
ec2b99c1f0
gnu: r-lme4: Update to 1.1-23.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-23.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-statmod.
2020-04-14 16:40:58 +02:00
91108903bc
gnu: r-mclust: Update to 5.4.6.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.6.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:58 +02:00
e470b9fa99
gnu: r-sfsmisc: Update to 1.1-6.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-6.
2020-04-14 16:40:58 +02:00
28e1e573cb
gnu: r-plotly: Update to 4.9.2.1.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.2.1.
2020-04-14 16:40:58 +02:00
5269899aac
gnu: r-devtools: Update to 2.3.0.
...
* gnu/packages/statistics.scm (r-devtools): Update to 2.3.0.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:58 +02:00
f3310342ac
gnu: r-backports: Update to 1.1.6.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.6.
2020-04-14 16:40:58 +02:00
1f08818752
gnu: r-xml2: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.1.
2020-04-14 16:40:58 +02:00
e872949f0d
gnu: r-gdtools: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.2.
2020-04-14 16:40:58 +02:00
3805ce3dba
gnu: r-reshape2: Update to 1.4.4.
...
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.4.
2020-04-14 16:40:58 +02:00
e78c54e7c6
gnu: r-survival: Update to 3.1-12.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.1-12.
2020-04-14 16:40:58 +02:00
14fd16ff83
gnu: r-nlme: Update to 3.1-147.
...
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-147.
2020-04-14 16:40:58 +02:00
22a98cda38
gnu: Add rkdeveloptool.
...
* gnu/packages/hardware.scm (rkdeveloptool): New variable.
2020-04-14 16:21:36 +02:00
53c05faf18
gnu: Add moptilities.
...
* gnu/packages/lisp-xyz.scm (cl-moptilities, sbcl-moptilities): New variables.
2020-04-14 15:49:58 +02:00
c0b158dff7
gnu: Add perl-authen-passphrase.
...
* gnu/packages/perl.scm (perl-authen-passphrase): New variable.
2020-04-14 14:41:40 +01:00
602fc1e5fa
gnu: Add perl-digest-md4.
...
* gnu/packages/perl.scm (perl-digest-md4): New variable.
2020-04-14 14:41:39 +01:00
77cf8b2c60
gnu: Add perl-crypt-des.
...
* gnu/packages/perl.scm (perl-crypt-des): New variable.
2020-04-14 14:41:38 +01:00
2aa17cef57
gnu: Add perl-crypt-cbc.
...
* gnu/packages/perl.scm (perl-crypt-cbc): New variable.
2020-04-14 14:41:37 +01:00
ca6b80c7f9
gnu: Add perl-crypt-mysql.
...
* gnu/packages/perl.scm (perl-crypt-mysql): New variable.
2020-04-14 14:41:36 +01:00
5b660f9f32
gnu: Add perl-crypt-passwdmd5.
...
* gnu/packages/perl.scm (perl-crypt-passwdmd5): New variable.
2020-04-14 14:41:35 +01:00
61078f0f94
gnu: Add perl-crypt-unixcrypt_xs.
...
* gnu/packages/perl.scm (perl-crypt-unixcrypt_xs): New variable.
2020-04-14 14:41:26 +01:00
7cb4c5211f
gnu: sbcl-cl-str: Update to 0.17.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-str): Update to 0.17.
2020-04-14 15:09:20 +02:00
df95189db6
gnu: Add cl-change-case.
...
* gnu/packages/lisp-xyz.scm (cl-change-case, sbcl-cl-change-case): New
variables.
2020-04-14 15:09:20 +02:00
0ad60b2a89
installer: Only load uvesafb kernel module when needed.
...
This is a follow-up to commit 557e6820a7
2020-04-14 13:05:57 +00:00
45c54093d5
gnu: xen: Update to 4.13.0.
...
* gnu/packages/virtualization.scm (xen): Update to 4.13.0.
2020-04-14 14:40:03 +02:00
fba62f8e92
gnu: pigx-chipseq: Update to 0.0.42.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.42.
2020-04-14 14:07:57 +02:00
893651af3e
installer: Open manual in the selected language on tty2.
...
Fixes <https://bugs.gnu.org/40624 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
Regression introduced in b5c2d93d7a
2020-04-14 13:01:58 +02:00
6177320d78
gnu: xen: Fix build failure.
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* gnu/packages/virtualization.scm (xen)[arguments]<#:phases>[set-environment-up]:
Use CPATH instead of C_INCLUDE_PATH, CPLUS_INCLUDE_PATH.
2020-04-14 12:04:17 +02:00
acaeaa0a29
gnu: sbcl-ironclad: Update to 0.49.
...
* gnu/packages/lisp-xyz.scm (sbcl-ironclad): Update to 0.49.
[inputs]: Add trivial-garbage.
2020-04-14 11:26:37 +02:00
5a9d2dfb74
gnu: Add emacs-typit.
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* gnu/packages/emacs-xyz.scm (emacs-typit): New variable.
2020-04-14 11:04:47 +02:00
780ed21da5
gnu: Add emacs-mmt.
...
* gnu/packages/emacs-xyz.scm (emacs-mmt): New variable.
2020-04-14 11:03:26 +02:00
e896a24a15
gnu: Add emacs-uml-mode.
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* gnu/packages/emacs-xyz.scm (emacs-uml-mode): New variable.
2020-04-14 10:57:44 +02:00
ff4ad2dd1e
gnu: Add emacs-org-roam.
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* gnu/packages/emacs-xyz.scm (emacs-org-roam): New variable.
2020-04-14 10:57:40 +02:00
dcf9a7dc01
gnu: Add blobwars.
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* gnu/packages/games.scm (blobwars): New variable.
2020-04-14 10:26:51 +02:00
3a3ec03412
gnu: emacs-org-make-toc: Update to 0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.5.
2020-04-14 09:53:26 +02:00
01a2911e36
gnu: volk: Update to 2.2.1.
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* gnu/packages/engineering.scm (volk): Update to 2.2.1.
[source]: Download using https.
[arguments]: Add phase to wrap binary in PYTHONPATH.
[native-inputs]: Remove python-2, python2-cheetah. Add python-wrapper,
python-mako.
[home-page]: Use https.
2020-04-14 10:25:28 +03:00
c206b83985
gnu: kawa: Update to 3.1.1.
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* gnu/packages/kawa.scm (kawa): Update to 3.1.1.
2020-04-14 07:07:04 +02:00
ea607b3551
gnu: kawa: Wrap to find java.
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* gnu/packages/kawa.scm (kawa)[arguments]: Add ‘wrap-kawa’ phase to set JAVA_HOME.
2020-04-14 07:07:04 +02:00
7059f925ea
gnu: webkitgtk: Update to 2.28.1.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.1.
2020-04-13 22:29:36 -04:00
ab3ad88ded
gnu: Add python-diceware.
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* gnu/packages/python-xyz.scm (python-diceware): New public variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-13 18:47:29 -04:00
11ecc5e5be
gnu: emacs-org-ref: Update to 5bb9be2232db72b04754d7e4c02a3976ad422f6f.
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* gnu/packages/emacs-xyz.scm (emacs-org-ref): Update to
5bb9be2232db72b04754d7e4c02a3976ad422f6f.
[version]: Use `git-version'.
[propagated-inputs]: Add "emacs-htmlize". Sort alphabetically.
[description]: Expound it.
2020-04-14 00:37:38 +02:00
c773c89fbb
gnu: MPD: Update to 0.21.22.
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* gnu/packages/mpd.scm (mpd): Update to 0.21.22.
2020-04-13 17:55:16 -04:00
ad5a8c0fc1
gnu: Mutt: Update to 1.13.5.
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* gnu/packages/mail.scm (mutt): Update to 1.13.5.
2020-04-13 17:55:12 -04:00
c4165dc0d1
gnu: linux-libre: Update to 5.4.32.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.32.
(linux-libre-5.4-pristine-source): Update hash.
2020-04-13 17:35:58 -04:00
dd10ef3ea5
gnu: linux-libre@5.6: Update to 5.6.4.
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* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.4.
(linux-libre-5.6-pristine-source): Update hash.
2020-04-13 17:35:26 -04:00
4d1e0f9022
gnu: linux-libre@4.19: Update to 4.19.115.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.115.
(linux-libre-4.19-pristine-source): Update hash.
2020-04-13 17:34:50 -04:00
26bb8123e2
gnu: linux-libre@4.14: Update to 4.14.176.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.176.
(linux-libre-4.14-pristine-source): Update hash.
2020-04-13 17:34:17 -04:00
af5a05ea89
gnu: linux-libre@4.9: Update to 4.9.219.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.219.
(linux-libre-4.9-pristine-source): Update hash.
2020-04-13 17:33:42 -04:00
068bd3e7b9
gnu: linux-libre@4.4: Update to 4.4.219.
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* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.219.
(linux-libre-4.4-pristine-source): Update hash.
2020-04-13 17:32:36 -04:00
bad368b0d7
Revert "gnu: http-parser: Update to 2.9.4."
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It fails to build on armhf-linux; see <https://bugs.gnu.org/40604 >.
This reverts commit 62f7f0d636
2020-04-13 20:18:52 +02:00
8d85ad6c6d
gnu: python-parameterized: Update to 0.7.3.
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* gnu/packages/check.scm (python-parameterized): Update to 0.7.3.
2020-04-13 19:38:04 +02:00
37eaefe84f
gnu: dnsmasq: Update to 2.81.
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* gnu/packages/dns.scm (dnsmasq): Update to 2.81.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-04-13 18:43:13 +02:00
2fa04968af
gnu: Add sbcl-enchant.
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* gnu/packages/lisp-xyz.scm (cl-enchant, sbcl-enchant): New variables.
2020-04-13 18:11:23 +02:00
95d9c1d7c9
gnu: sbcl-cl-webkit: Update to 20200413.
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* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200413.
2020-04-13 18:11:23 +02:00
Leo Famulari
Ludovic Courtès
Michael Rohleder
Marius Bakke
Tobias Geerinckx-Rice
Ricardo Wurmus
Jan (janneke) Nieuwenhuizen
Pierre Neidhardt
Paul Garlick
Florian Pelz
Danny Milosavljevic
Guillaume Le Vaillant
Alberto Eleuterio Flores Guerrero
Alberto EFG
Efraim Flashner
Mark H Weaver
Matthew Kraai
Nicolas Goaziou
Pierre Langlois