me
/
guix
Archived
1
0
Fork 0
Commit Graph

73407 Commits (425ccde6ae7bd4b448ee2fffd8c0b6b7bcbb543c)

Author SHA1 Message Date
Morgan Smith acfeccd8da
gnu: openocd: Build and install info manual.
* gnu/packages/embedded.scm (openocd)[native-inputs]: Add texinfo.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-07-13 00:22:17 -04:00
Maxim Cournoyer c881516d48
gnu: proot: Update to 5.2.0-alpha.
This allows proot to be built for aarch64-linux and armhf-linux.

* gnu/packages/patches/proot-test-fhs.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/linux.scm: Update to 5.2.0-alpha.
[patches]: Remove field.
[supported-system]: New field.
[tests?]: Disable for ARM-based systems.
[phases]{fix-fhs-assumptions-in-tests, set-shell-file-name}: Combine into...
{patch-sources}: ... this new phase.
{build-manpage}: New phase.
{check}: Add seccomp issue URL in comment.
[native-inputs]: Add coreutils issue URL in comment.  Add pkg-config and
python-docutils.
[inputs]: Add libarchive.
2021-07-12 11:37:40 -04:00
Maxim Cournoyer 2d69073245
gnu: proot: Make the check phase honor the tests? argument.
* gnu/packages/linux.scm: Remove duplicate copyright line.
(proot): Delete trailing #t.
[phases]{check}: Skip when TESTS? is #f.
2021-07-12 11:37:31 -04:00
Paul Garlick 3af31bc25a
gnu: Add python-pygmsh.
* gnu/packages/simulation.scm (python-pygmsh): New variable.
2021-07-12 16:20:13 +01:00
Paul Garlick b9fd7f9d5b
gnu: gmsh: Install Python API in standard directory.
* gnu/packages/maths.scm (gmsh)[imported-modules]: New argument.
[modules]: New argument.
[phases]: New argument.
[inputs]: Add python.
2021-07-12 16:19:46 +01:00
Charles 62b60ba082
gnu: Add cl-authentic.
* gnu/packages/lisp-xyz.scm (sbcl-authentic, ecl-authentic, cl-authentic): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-12 17:04:09 +02:00
Efraim Flashner 9987126065
gnu: java-xz: Update to 1.9.
* gnu/packages/java-compression.scm (java-xz): Update to 1.9.
[arguments]: Build with openjdk9.
2021-07-12 16:57:09 +03:00
Leo Prikler 718c09cf73
gnu: gnome-maps: Update to 3.36.7.
* gnu/packages/geo.scm (gnome-maps): Update to 3.36.7.
2021-07-12 15:03:24 +02:00
Vinicius Monego 4f013b8c82
gnu: libheif: Satisfy 'libheif.pc'.
* gnu/packages/image.scm (libheif)[inputs]: Move dav1d, libaom, libde265, x265
to ...
[propagated-inputs]: ... here.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-12 16:00:20 +03:00
Domagoj Stolfa e34f7dfcc3
gnu: strongswan: Update to 5.9.3.
* gnu/packages/vpn.scm (strongswan): Update to 5.9.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-12 15:55:39 +03:00
Pierre Neidhardt 23af19f964
gnu: Add spinneret.
* gnu/packages/lisp-xyz.scm (cl-spinneret, ecl-spinneret, sbcl-spinneret): New variables.
2021-07-12 13:09:13 +02:00
Ludovic Courtès a6f3800173
gnu: fontconfig: Don't build PDFs.
* gnu/packages/fontutils.scm (fontconfig-with-documentation)[arguments]:
Add 'no-pdf-doc' phase.
2021-07-12 10:42:37 +02:00
Charles a1522f49f4
gnu: Add cl-cache-while.
* gnu/packages/lisp-xyz.scm (sbcl-cache-while, ecl-cache-while,
  cl-cache-while): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-12 09:33:03 +02:00
Charles fd53b2122c
gnu: cl-tailrec: Update to 0-2.6f88284.
* gnu/packages/lisp-xyz.scm (sbcl-tailrec): Update to 0-2.6f88284.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-12 09:24:17 +02:00
Leo Famulari b4cb403cf4
gnu: linux-libre 4.4: Update to 4.4.275.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.275.
(linux-libre-4.4-pristine-source): Update hash.
2021-07-11 23:56:53 -04:00
Leo Famulari 610d01418f
gnu: linux-libre 4.9: Update to 4.9.275.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.275.
(linux-libre-4.9-pristine-source): Update hash.
2021-07-11 23:56:53 -04:00
Leo Famulari 575313d870
gnu: linux-libre 4.14: Update to 4.14.239.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.239.
(linux-libre-4.14-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
Leo Famulari e833b9b30f
gnu: linux-libre 4.19: Update to 4.19.197.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.197.
(linux-libre-4.19-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
Leo Famulari b1e0414d9f
gnu: linux-libre 5.4: Update to 5.4.131.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.131.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
Leo Famulari d110cfa62f
gnu: linux-libre 5.10: Update to 5.10.49.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.49.
(linux-libre-5.10-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
Leo Famulari b0f1c4fc08
gnu: linux-libre: Update to 5.12.16.
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.16.
(linux-libre-5.12-pristine-source): Update hash.
2021-07-11 23:56:49 -04:00
Danny Milosavljevic 0e86d6ffed
gnu: Add cc65.
* gnu/packages/emulators.scm (cc65): New variable.
2021-07-12 01:48:20 +02:00
Danny Milosavljevic dacda11541
gnu: Add exomizer.
* gnu/packages/emulators.scm (exomizer): New variable.
2021-07-12 01:48:12 +02:00
Sarah Morgensen 6f12880a76
gnu: fontconfig: Use (locally) deterministic caching
Make fontconfig use directory contents rather than modification time to
determine cache validity (by pretending that mtime is broken).

* gnu/packages/patches/fontconfig-cache-ignore-mtime.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
[arguments]: Unset SOURCE_DATE_EPOCH for tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-11 18:17:31 +02:00
Efraim Flashner 7760d28920
gnu: java-xz: Mark source as zipbomb.
* gnu/packages/java-compression.scm (java-xz)[source]: Download source
as zipbomb.
[argments]: Remove custom 'chdir phase.
2021-07-11 14:07:00 +03:00
Efraim Flashner 24edccba3d
gnu: julia-mbedtls-jll: Update to 2.26.0+0.
* gnu/packages/julia-jll.scm (julia-mbedtls-jll): Update to 2.26.0+0.
2021-07-11 13:46:15 +03:00
aecepoglu 5c3489a3f7
gnu: Add parinfer-rust.
* gnu/packages/text-editors.scm (parinfer-rust): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:17 +03:00
aecepoglu 9373e358a5
gnu: Add rust-emacs-0.11.
* gnu/packages/crates-io.scm (rust-emacs-0.11): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:17 +03:00
aecepoglu 6eb024ec27
gnu: Add rust-emacs-macros-0.11.
* gnu/packages/crates-io.scm (rust-emacs-macros-0.11): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
aecepoglu 180116a8cd
gnu: Add rust-darling-0.9.
* gnu/packages/crates-io.scm (rust-darling-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
aecepoglu 83274b89b0
gnu: Add rust-darling-macro-0.9.
* gnu/packages/crates-io.scm (rust-darling-macro-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
aecepoglu b1f8d3a943
gnu: Add rust-darling-core-0.9.
* gnu/packages/crates-io.scm (rust-darling-core-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
aecepoglu 46246ea24f
gnu: Add rust-strsim-0.7.
* gnu/packages/crates-io.scm (rust-strsim-0.7): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
aecepoglu d58064b600
gnu: Add rust-emacs-module-0.10.
* gnu/packages/crates-io.scm (rust-emacs-module-0.10): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:07:01 +03:00
aecepoglu d7b2b291a1
gnu: Add rust-bindgen-0.48.
* gnu/packages/crates-io.scm (rust-bindgen-0.48): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:07:00 +03:00
Ludovic Courtès 2f73ea3487
gnu: Change inputs of core packages to plain lists.
This is transparent: the resulting derivations are unchanged.

* gnu/packages/base.scm (grep, sed, tar, patch, diffutils, glibc/hurd-headers)
(coreutils, gnu-make, make-glibc-utf8-locales): Change input fields to
plain package lists and use 'modify-inputs'.
* gnu/packages/guile.scm (guile-1.8, guile-json-1, guile-json-3)
(guile-gdbm-ffi, guile-sqlite3, guile-bytestructures)
(guile-git, guile-zlib, guile-lzlib, guile-zstd, guile-next): Likewise.
* gnu/packages/mes.scm (nyacc-0.86, nyacc-0.99)
(nyacc, nyacc-1.00.2, mes-0.19, mes, m2-planet): Likewise.
2021-07-11 00:49:14 +02:00
Ricardo Wurmus 6db1afed3d
gnu: r-car: Update to 3.0-11.
* gnu/packages/statistics.scm (r-car): Update to 3.0-11.
2021-07-10 21:35:36 +02:00
Ricardo Wurmus 762b1de334
gnu: r-lme4: Update to 1.1-27.1.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-27.1.
2021-07-10 21:35:36 +02:00
Ricardo Wurmus c7e86b9af6
gnu: r-quantreg: Update to 5.86.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.86.
2021-07-10 21:35:36 +02:00
Ricardo Wurmus 4e7bf05978
gnu: r-plotly: Update to 4.9.4.1.
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.4.1.
2021-07-10 21:35:36 +02:00
Ricardo Wurmus 85738e4566
gnu: r-mvtnorm: Update to 1.1-2.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-2.
2021-07-10 21:35:36 +02:00
Ricardo Wurmus 3a68bf166d
gnu: r-glmnet: Update to 4.1-2.
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-2.
2021-07-10 21:35:36 +02:00
Ricardo Wurmus 01d2ac1b7b
gnu: r-rmarkdown: Update to 2.9.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.9.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 47ffcaf1d6
gnu: r-devtools: Update to 2.4.2.
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.2.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 88d0cc0e77
gnu: r-ade4: Update to 1.7-17.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-17.
[propagated-inputs]: Remove r-progress.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus b5912cdea5
gnu: r-dplyr: Update to 1.0.7.
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.7.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 7dd5f33d31
gnu: r-testthat: Update to 3.0.4.
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.4.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 756449c642
gnu: r-mime: Update to 0.11.
* gnu/packages/statistics.scm (r-mime): Update to 0.11.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus c4b65d50e3
gnu: r-ggplot2: Update to 3.3.5.
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.5.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 7ca365a304
gnu: r-vroom: Update to 1.5.2.
* gnu/packages/cran.scm (r-vroom): Update to 1.5.2.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 15507dc5ab
gnu: r-btm: Update to 0.3.6.
* gnu/packages/cran.scm (r-btm): Update to 0.3.6.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 05334f818d
gnu: r-eyelinker: Update to 0.2.1.
* gnu/packages/cran.scm (r-eyelinker): Update to 0.2.1.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 76ea5b92ed
gnu: r-stars: Update to 0.5-3.
* gnu/packages/cran.scm (r-stars): Update to 0.5-3.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 9e7cae489b
gnu: r-ragg: Update to 1.1.3.
* gnu/packages/cran.scm (r-ragg): Update to 1.1.3.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus fb034eee87
gnu: r-textshaping: Update to 0.3.5.
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.5.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 494d72e956
gnu: r-mlr3misc: Update to 0.9.2.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.2.
2021-07-10 21:35:35 +02:00
Ricardo Wurmus 59355a551a
gnu: r-diversitree: Update to 0.9-16.
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-16.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 53bff86803
gnu: r-slider: Update to 0.2.2.
* gnu/packages/cran.scm (r-slider): Update to 0.2.2.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 10bbb68d30
gnu: r-cpp11: Update to 0.3.1.
* gnu/packages/cran.scm (r-cpp11): Update to 0.3.1.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 933986d42f
gnu: r-spatstat: Update to 2.2-0.
* gnu/packages/cran.scm (r-spatstat): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 69eb17751b
gnu: r-spatstat-linnet: Update to 2.2-1.
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.2-1.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 86b4c08fd7
gnu: r-spatstat-core: Update to 2.2-0.
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus b29b3b4bc8
gnu: r-spatstat-geom: Update to 2.2-0.
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus de77e21eed
gnu: r-spatstat-utils: Update to 2.2-0.
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus c13d544d67
gnu: r-rismed: Update to 2.3.0.
* gnu/packages/cran.scm (r-rismed): Update to 2.3.0.
[propagated-inputs]: Add r-httr and r-xml2.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 8afab27a97
gnu: r-optimx: Update to 2021-6.12.
* gnu/packages/cran.scm (r-optimx): Update to 2021-6.12.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 43d1119db9
gnu: r-zvcv: Update to 2.1.1.
* gnu/packages/cran.scm (r-zvcv): Update to 2.1.1.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 91bb4f5228
gnu: r-tam: Update to 3.7-16.
* gnu/packages/cran.scm (r-tam): Update to 3.7-16.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 6f9530ca13
gnu: r-openmx: Update to 2.19.6.
* gnu/packages/cran.scm (r-openmx): Update to 2.19.6.
[propagated-inputs]: Add r-rcppparallel.
2021-07-10 21:35:34 +02:00
Ricardo Wurmus 85c613434c
gnu: r-regsem: Update to 1.8.0.
* gnu/packages/cran.scm (r-regsem): Update to 1.8.0.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 7668566ed6
gnu: r-semtools: Update to 0.5-5.
* gnu/packages/cran.scm (r-semtools): Update to 0.5-5.
[propagated-inputs]: Add r-pbivnorm.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 026bd0b219
gnu: r-matrixcalc: Update to 1.0-4.
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-4.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus ed5f29921d
gnu: r-icge: Update to 0.4.1.
* gnu/packages/cran.scm (r-icge): Update to 0.4.1.
[propagated-inputs]: Add r-fastcluster.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus f1d6a1fe0f
gnu: r-imager: Update to 0.42.10.
* gnu/packages/cran.scm (r-imager): Update to 0.42.10.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 0e6f5ab3c8
gnu: r-accept: Update to 0.8.3.
* gnu/packages/cran.scm (r-accept): Update to 0.8.3.
[propagated-inputs]: Remove r-extrafont, r-mass, r-plotly, r-stringr, and r-viridis; add
r-reldist.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 04a02f607f
gnu: r-terra: Update to 1.3-4.
* gnu/packages/cran.scm (r-terra): Update to 1.3-4.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 1d101e2c17
gnu: r-ggfortify: Update to 0.4.12.
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.12.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 74497e3d59
gnu: r-arsenal: Update to 3.6.3.
* gnu/packages/cran.scm (r-arsenal): Update to 3.6.3.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 213aa55c49
gnu: r-sf: Update to 1.0-1.
* gnu/packages/cran.scm (r-sf): Update to 1.0-1.
[propagated-inputs]: Add r-s2.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 14ace84ceb
gnu: r-spdata: Update to 0.3.10.
* gnu/packages/cran.scm (r-spdata): Update to 0.3.10.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 816697dcde
gnu: r-units: Update to 0.7-2.
* gnu/packages/cran.scm (r-units): Update to 0.7-2.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus 8d77bafedf
gnu: r-seqinr: Update to 4.2-8.
* gnu/packages/cran.scm (r-seqinr): Update to 4.2-8.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus d984f2bdca
gnu: r-lavaan: Update to 0.6-9.
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-9.
2021-07-10 21:35:33 +02:00
Ricardo Wurmus ad6c16a265
gnu: r-parallelly: Update to 1.26.1.
* gnu/packages/cran.scm (r-parallelly): Update to 1.26.1.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 61d12816e0
gnu: r-huge: Update to 1.3.5.
* gnu/packages/cran.scm (r-huge): Update to 1.3.5.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus fd8fa3e3f2
gnu: r-fields: Update to 12.5.
* gnu/packages/cran.scm (r-fields): Update to 12.5.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 7f60a75890
gnu: r-spam: Update to 2.7-0.
* gnu/packages/cran.scm (r-spam): Update to 2.7-0.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 7bd52c907d
gnu: r-gargle: Update to 1.2.0.
* gnu/packages/cran.scm (r-gargle): Update to 1.2.0.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 09455e411b
gnu: r-ks: Update to 1.13.2.
* gnu/packages/cran.scm (r-ks): Update to 1.13.2.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 01bb26a35f
gnu: r-multicool: Update to 0.1-12.
* gnu/packages/cran.scm (r-multicool): Update to 0.1-12.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 4c472f2d4e
gnu: r-biocmanager: Update to 1.30.16.
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.16.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus ac11238206
gnu: r-weights: Update to 1.0.4.
* gnu/packages/cran.scm (r-weights): Update to 1.0.4.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 92fba40999
gnu: r-rcppgsl: Update to 0.3.9.
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.9.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 7be666db46
gnu: r-pander: Update to 0.6.4.
* gnu/packages/cran.scm (r-pander): Update to 0.6.4.
[native-inputs]: Add r-knitr.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus ba4caa13e9
gnu: r-remotes: Update to 2.4.0.
* gnu/packages/cran.scm (r-remotes): Update to 2.4.0.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 0a23437a54
gnu: r-gert: Update to 1.3.1.
* gnu/packages/cran.scm (r-gert): Update to 1.3.1.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 3166bc2408
gnu: r-glmmtmb: Update to 1.1.1.
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.1.
[propagated-inputs]: Add r-numderiv.
2021-07-10 21:35:32 +02:00
Ricardo Wurmus 0864d8fa6e
gnu: r-bayesplot: Update to 1.8.1.
* gnu/packages/cran.scm (r-bayesplot): Update to 1.8.1.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 00f9a72541
gnu: r-emmeans: Update to 1.6.2-1.
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.2-1.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 8f7ee20c8a
gnu: r-furrr: Update to 0.2.3.
* gnu/packages/cran.scm (r-furrr): Update to 0.2.3.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 1a06214393
gnu: r-raster: Update to 3.4-13.
* gnu/packages/cran.scm (r-raster): Update to 3.4-13.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 603f174555
gnu: r-rootsolve: Update to 1.8.2.2.
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.2.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 666795c501
gnu: r-insight: Update to 0.14.2.
* gnu/packages/cran.scm (r-insight): Update to 0.14.2.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 350355e977
gnu: r-rbibutils: Update to 2.2.1.
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.1.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 8eb8537ff9
gnu: r-ggsignif: Update to 0.6.2.
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.2.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus eaae566287
gnu: r-rio: Update to 0.5.27.
* gnu/packages/cran.scm (r-rio): Update to 0.5.27.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus f5a92fff5b
gnu: r-openxlsx: Update to 4.2.4.
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.4.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus fb17d9004d
gnu: r-np: Update to 0.60-11.
* gnu/packages/cran.scm (r-np): Update to 0.60-11.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 2543c36d6f
gnu: r-statnet-common: Update to 4.5.0.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.5.0.
[propagated-inputs]: Remove r-rle.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus 8ebfd52a36
gnu: r-network: Update to 1.17.1.
* gnu/packages/cran.scm (r-network): Update to 1.17.1.
[propagated-inputs]: Add r-statnet-common.
2021-07-10 21:35:31 +02:00
Ricardo Wurmus d5745aa8ec
gnu: r-tinytest: Update to 1.3.1.
* gnu/packages/cran.scm (r-tinytest): Update to 1.3.1.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus 5ca69fbbf9
gnu: r-xfun: Update to 0.24.
* gnu/packages/cran.scm (r-xfun): Update to 0.24.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus ca62c0720c
gnu: r-seriation: Update to 1.3.0.
* gnu/packages/cran.scm (r-seriation): Update to 1.3.0.
[propagated-inputs]: Remove r-dendextend and r-gplots.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus e3f0e6b937
gnu: r-cli: Update to 3.0.0.
* gnu/packages/cran.scm (r-cli): Update to 3.0.0.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus faa618a65e
gnu: r-corrplot: Update to 0.90.
* gnu/packages/cran.scm (r-corrplot): Update to 0.90.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus c71508a41e
gnu: r-broom: Update to 0.7.8.
* gnu/packages/cran.scm (r-broom): Update to 0.7.8.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus da8acbb9e0
gnu: r-psych: Update to 2.1.6.
* gnu/packages/cran.scm (r-psych): Update to 2.1.6.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus ee927e952f
gnu: r-rmysql: Update to 0.10.22.
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.22.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus ce5e71e820
gnu: r-proxy: Update to 0.4-26.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-26.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus c8fcf4d8de
gnu: r-ggally: Update to 2.1.2.
* gnu/packages/cran.scm (r-ggally): Update to 2.1.2.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus 0d847b49a9
gnu: r-circlize: Update to 0.4.13.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.13.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus abb371b6a0
gnu: r-rcpp: Update to 1.0.7.
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.7.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus e62ed5eabb
gnu: r-colorspace: Update to 2.0-2.
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-2.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus 87de49a2b4
gnu: r-curl: Update to 4.3.2.
* gnu/packages/cran.scm (r-curl): Update to 4.3.2.
2021-07-10 21:35:30 +02:00
Ricardo Wurmus 3293074c51
gnu: r-ggpmisc: Update to 0.4.0.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.0.
[propagated-inputs]: Remove r-magrittr; add r-ggpp and r-quantreg.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 8c5561396f
gnu: r-rticles: Update to 0.20.
* gnu/packages/cran.scm (r-rticles): Update to 0.20.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 95aec55c4a
gnu: r-googledrive: Update to 2.0.0.
* gnu/packages/cran.scm (r-googledrive): Update to 2.0.0.
[propagated-inputs]: Remove r-curl; add r-cli, r-lifecycle, r-pillar, r-vctrs, and r-withr.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 4140b66837
gnu: r-gviz: Update to 1.36.2.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 564142d25e
gnu: r-catalyst: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus c4ffceb0c2
gnu: r-rhdf5lib: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus e957d6c93b
gnu: r-bioconcotk: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 1cbcf54204
gnu: r-biocstyle: Update to 2.20.2.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 23abd7b6b6
gnu: r-mixomics: Update to 6.16.1.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 3d539883ca
gnu: r-rsubread: Update to 2.6.3.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.3.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus a94d1e3b4c
gnu: r-annaffy: Update to 1.64.2.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.64.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 344c901a4c
gnu: r-clusterprofiler: Update to 4.0.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus a5e6826020
gnu: r-enrichplot: Update to 1.12.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 209642912d
gnu: r-dose: Update to 3.18.1.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus 072533f579
gnu: r-diffbind: Update to 3.2.4.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.4.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 9496f34e23
gnu: r-systempiper: Update to 1.26.3.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.3.
[propagated-inputs]: Add r-crayon and r-s4vectors.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus ea52ad7d4f
gnu: r-mzr: Update to 2.26.1.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 8936e45327
gnu: r-limma: Update to 3.48.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus dfe8e5cca6
gnu: r-genomeinfodb: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus fd00ed8ff8
gnu: r-ensembldb: Update to 2.16.2.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.2.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 3c60e8d5e5
gnu: r-edaseq: Update to 2.26.1.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus f8d7d07679
gnu: r-biocparallel: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 03c9d86432
gnu: r-biomart: Update to 2.48.2.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.2.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 74bfaf92db
gnu: r-annotationhub: Update to 3.0.1.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus bc85faf9a2
gnu: Add r-ggpp.
* gnu/packages/cran.scm (r-ggpp): New variable.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 48abef355d
gnu: Add r-s2.
* gnu/packages/cran.scm (r-s2): New variable.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 9a3f66ee7b
gnu: Add r-wk.
* gnu/packages/cran.scm (r-wk): New variable.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus 39e1bc5b02
gnu: Add r-reldist.
* gnu/packages/cran.scm (r-reldist): New variable.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus c0e4357043
gnu: r-gtools: Update to 3.9.2.
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.
[arguments]: Remove.
2021-07-10 21:35:27 +02:00
Ricardo Wurmus ce84ba5bd7
gnu: r-vdiffr: Update to 1.0.2.
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.2.
[source]: Remove snippet.
[arguments]: Remove.
[inputs]: Remove freetype and harfbuzz; add libpng and zlib.
[propagated-inputs]: Remove r-bh, r-devtools, r-fontquiver,
r-freetypeharfbuzz, r-gdtools, r-htmlwidgets, r-purrr, r-r6, r-rcpp, r-shiny,
and r-usethis; add r-cpp11 and r-lifecycle.
[native-inputs]: Remove esbuild and js-jquery.
2021-07-10 21:35:27 +02:00
Ricardo Wurmus 94be433332
gnu: r-rintrojs: Update to 0.3.0.
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.0.
[source]: Delete minified JavaScript in snippet.
[arguments]: Minify with esbuild.
[native-inputs]: Replace uglify-js with esbuild; update intro.js to 3.2.1.
[license]: Add license of intro.js.
2021-07-10 21:35:24 +02:00
Timotej Lazar 5c45ed059c
gnu: qpdfview: Use qt-build-system.
This fixes compilation after the recent reorganization of qt-build-system. As
a side effect, specifying Qt plugins with environment variables now works.

* gnu/packages/pdf.scm (qpdfview)[build-system]: Use qt-build-system.
[arguments]: Drop #:modules and #:imported-modules, and the 'qt-wrap
phase. Specify that there are no tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-07-10 14:17:49 -04:00
Ludovic Courtès ac815ecd63
ci: Build commencement packages supported on the target system.
This is a followup to df49fe2a13.

* gnu/ci.scm (%bootstrap-packages): Rename to...
(commencement-packages): ... this, and turn into a procedure.  Filter
packages that pass 'supported-package?'.
(cuirass-jobs): Adjust accordingly.
2021-07-10 19:59:31 +02:00
Pierre Neidhardt 45fdb03500
gnu: sbcl-generic-cl: Update to 0.9.
* gnu/packages/lisp-xyz.scm (sbcl-generic-cl): Update to 0.9.
2021-07-10 17:07:17 +02:00
Pierre Neidhardt e1b53728cc
gnu: Add cl-form-types.
* gnu/packages/lisp-xyz.scm (cl-form-types, ecl-cl-form-types,
sbcl-cl-form-types): New variables.
2021-07-10 17:07:17 +02:00
Ivan Gankevich c21ccbf14e
gnu: Add ocaml-bibtex2html.
* gnu/packages/ocaml.scm (ocaml-bibtex2html): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-07-10 15:02:12 +02:00
Julien Lepiller f7f6cbb6b6
gnu: Add texlive-preprint.
* gnu/packages/tex.scm (texlive-preprint): New variable.
2021-07-10 15:01:59 +02:00
Ivan Gankevich bfa0df0d61
gnu: hevea: Update to 2.35.
* gnu/packages/ocaml.scm (hevea): Update to 2.35.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-07-10 15:01:31 +02:00
Pierre Neidhardt 4dc0337146
gnu: sbcl-cl-gserver: Update to 1.8.0.
* gnu/packages/lisp-xyz.scm (sbcl-cl-gserver): Update to 1.8.0.
2021-07-10 12:18:22 +02:00
Justin Veilleux 24ee1448e8
gnu: Add netdiscover.
* gnu/packages/networking.scm (netdiscover): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-10 15:11:26 +05:30
Julien Lepiller 80506bc6da
gnu: python-pyyaml: Fix build.
python-cython is required to generate the C source for the libyaml
extension, which is required for the `_yaml' module to work.  This in
turn lets the `sanity-check' phase succeed.

* gnu/packages/python-xyz.scm (python-pyyaml)[inputs]: Add
python-cython.
2021-07-10 01:39:07 +02:00
Ludovic Courtès c823b95825
gnu: coreutils: Patch broken Gnulib tests.
Fixes <https://bugs.gnu.org/49459>.

* gnu/packages/patches/coreutils-gnulib-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (coreutils)[source]: Use it.
2021-07-10 01:31:42 +02:00
Ludovic Courtès 2ea2bca1dd
services: qemu-binfmt: Preserve argv[0] by default.
Previously, argv[0] would be replaced by the absolute file name of the
executable.  This could cause discrepancies, for example in the
Coreutils test suite: <https://issues.guix.gnu.org/49485>.

* gnu/services/virtualization.scm (<qemu-platform>)[flags]: Default to "FP".
2021-07-10 00:24:59 +02:00
Arun Isaac 4ac2e09051
gnu: go-github-com-golang-snappy: Update to 0.0.4.
* gnu/packages/syncthing.scm (go-github-com-golang-snappy): Update to 0.0.4.
2021-07-09 21:34:34 +05:30
Andrew Tropin 314beace60
gnu: emacs-dash: Update to 2.19.0.
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.19.0.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 17:57:11 +02:00
Zhu Zihao 2086a6a335
gnu: emacs-telega: Fix 'patch-source' phase.
* gnu/packages/emacs-xyz.scm (emacs-telega)[#:phases]<patch-sources>:
Add missing slash in ‘/bin’ when patching general commands.
Also patch telega-vvnote.el.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 17:57:10 +02:00
Leo Prikler 4236b8586d
gnu: emacs-xyz: Fix indentation.
* gnu/packages/emacs-xyz.scm: Delete trailing newline.
(emacs-purescript-mode): Delete trailing space.
2021-07-09 15:08:04 +02:00
Leo Prikler 55d8eca5e9
gnu: emacs-telega-server: Update to 0.7.025.
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.7.025.
2021-07-09 15:08:04 +02:00
Zhu Zihao cd42e8001a
gnu: emacs-telega-contrib: Update to 0.7.024.
* gnu/packages/emacs-xyz.scm(emacs-telega-contrib): Update to 0.7.024.
[arguments]<#:phases>: Back to root directory of build before phase
'install-license-files' to properly install licenses.
[propagated-inputs]: Add emacs-dashboard, emacs-transient.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 15:08:04 +02:00
Zhu Zihao a303be7c3b
gnu: emacs-telega: Update to 0.7.024.
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.7.024.
[build-system] Use emacs-build-system.
[arguments] Add #:emacs.
Drop outdated phases.
Update ‘patch-sources’ phase to find new occurences of ffmpeg to patch.
Add new ‘configure’ and ‘install-share-files’ phases.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 15:08:04 +02:00
Zhu Zihao d0ccdd707d
gnu: Add emacs-telega-server.
* gnu/packages/emacs-xyz.scm (emacs-telega-server): New variable.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: New file.
* gnu/package/patches/emacs-telega-patch-server-functions.patch: Remove stale patch.
* gnu/local.mk (dist_patch_DATA): Update accordingly.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 15:08:04 +02:00
Mathieu Othacehe df49fe2a13
ci: Add bootstrap packages to the core subset.
* gnu/ci.scm (%bootstrap-packages): New variable.
(cuirass-jobs): Add it to the core subset.
2021-07-09 14:12:40 +02:00
Mathieu Othacehe 37861f6c29
ci: Add bootstrap packages to the core subset.
* gnu/ci.scm (%bootstrap-packages): New variable.
(cuirass-jobs): Add it to the core subset.
2021-07-09 14:12:15 +02:00
Mathieu Othacehe 74168d99bb
system: Provide mg instead of zile.
Since the update to the 2.6.2 release, the closure size of zile has
increased. Switch to mg which is lighter.

* gnu/system.scm (%base-packages-interactive): Replace zile by mg.
* doc/guix.texi (Proceeding with the Installation,
Using the Configuration System): Adapt those sections.
2021-07-09 12:08:12 +02:00
Ludovic Courtès b182121458
gnu: python-arrow: Honor #:tests? in 'check' phase.
* gnu/packages/time.scm (python-arrow)[arguments]: 'check' phase honors
 #:tests?.
2021-07-09 11:58:52 +02:00
Kris Fremen 7ad7b07806
gnu: python-arrow: Update to 1.1.1.
* gnu/packages/time.scm (python-arrow): Update to 1.1.1.
2021-07-09 11:58:51 +02:00
Hugo Lecomte af7708261f
gnu: Add repo2docker.
* gnu/packages/jupyter.scm (repo2docker): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
Hugo Lecomte faa26f2342
gnu: Add python-pydata-sphinx-theme.
* gnu/packages/sphinx.scm (python-pydata-sphinx-theme): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
Hugo Lecomte 885c1bd06e
gnu: Add python-sphinxcontrib-autoprogram.
* gnu/packages/sphinx.scm (python-sphinxcontrib-autoprogram): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
Hugo Lecomte d6b3908840
gnu: Add python-jupyter-sphinx.
* gnu/packages/sphinx.scm (python-jupyter-sphinx): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
Hugo Lecomte e31979c3a5
gnu: Add python-pytest-regressions.
* gnu/packages/check.scm (python-pytest-regressions): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
Hugo Lecomte 778ae273e9
gnu: Add python-pytest-datadir.
* gnu/packages/check.scm (python-pytest-datadir): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
Hugo Lecomte 68a33f3d19
gnu: Add python-recommonmark.
* gnu/packages/python-xyz.scm (python-recommonmark): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:50 +02:00
Hugo Lecomte 4204af9967
gnu: Add python-escapism.
* gnu/packages/python-xyz.scm (python-escapism): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:50 +02:00
Ludovic Courtès 9bfc4a8187
gnu: python-seaborn: Update to 0.11.1.
* gnu/packages/patches/python-seaborn-kde-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to
0.11.1.
2021-07-09 11:58:50 +02:00
Ludovic Courtès 3125255cc5
gnu: python-seaborn: Simplify 'start-xserver' phase.
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: In
'start-xserver' phase, assume "Xvfb" is in $PATH.
2021-07-09 11:58:50 +02:00
Ludovic Courtès c7cfe54018
gnu: python-seaborn: 'check' phase honors #:tests?.
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Change
'check' phase to honor #:tests?.
2021-07-09 11:58:50 +02:00
Tobias Geerinckx-Rice ef3d60fc76
gnu: mergerfs-tools: Update to 0.0.0-3.3b6fe00.
* gnu/packages/file-systems.scm (mergerfs-tools): Update to 0.0.0-3.3b6fe00.
2021-07-09 04:30:45 +02:00
Tobias Geerinckx-Rice 7292585f3c
gnu: mergerfs: Clean up arguments.
* gnu/packages/file-systems.scm (mergerfs)[arguments]: Remove some
incorrect comments & rewrite code accordingly.  Pass the PREFIX as a
make flag.
2021-07-09 04:30:39 +02:00
Tobias Geerinckx-Rice 478104c398
gnu: mergerfs: Do not refer to the native bash.
* gnu/packages/linux.scm (mergerfs)[inputs]: Add bash-minimal.
[arguments]: Refer to it rather than to the native build bash.
2021-07-09 04:27:33 +02:00
Tobias Geerinckx-Rice 5f071925ef
gnu: mergerfs: Cross-compile.
* gnu/packages/file-systems.scm (mergerfs)[arguments]: Use CC-FOR-TARGET
and CXX-FOR-TARGET.  Don't let the Makefile strip binaries.
2021-07-09 04:26:45 +02:00
Tobias Geerinckx-Rice 73a2edf25b
gnu: mergerfs: Update to 2.32.6.
* gnu/packages/file-systems.scm (mergerfs): Update to 2.32.6.
2021-07-09 03:30:20 +02:00
Ivan Gankevich e499500730
gnu: Add bibtool.
* gnu/packages/tex.scm (bibtool): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:22:05 +02:00
jgart via Guix-patches via 889c5c584f
gnu: clikan: Upgrade to 0.2.1.
* gnu/packages/task-management.scm (clikan)[version]: Upgrade to
0.2.1.
[arguments]: Enable tests.
[inputs]: Add python-rich.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:08:49 +02:00
Vinicius Monego e01ae01e57
gnu: drawing: Update to 0.8.2.
* gnu/packages/gnome.scm (drawing): Update to 0.8.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:01:31 +02:00
Vinicius Monego 65c70b820b
gnu: lightspark: Update to 0.8.5.
* gnu/packages/animation.scm (lightspark): Update to 0.8.5.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:00:37 +02:00
Leo Famulari 000083c098
gnu: linux-libre 5.4: Update to 5.4.130.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.130.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-08 16:27:14 -04:00
Leo Famulari 6d625242a6
gnu: linux-libre 5.10: Update to 5.10.48.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.48.
(linux-libre-5.10-pristine-source): Update hash.
2021-07-08 16:27:14 -04:00
Leo Famulari d9b1cd8d28
gnu: linux-libre: Update to 5.12.15.
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.15.
(linux-libre-5.12-pristine-source): Update hash.
2021-07-08 16:27:13 -04:00
Leo Famulari efdb07729c
gnu: python-shiboken-2: Update to 5.15.2.
* gnu/packages/qt.scm (python-shiboken-2): Update to 5.15.2.
2021-07-08 16:27:10 -04:00
Maxime Devos f78a09f0c4
gnu: libolm: Respect "--without-tests".
* gnu/packages/libolm.scm
  (libolm)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:17 +02:00
Maxime Devos f78975c8e0
gnu: python-h2: Respect "--without-tests".
* gnu/packages/python-web.scm
  (python-h2)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:13 +02:00
Maxime Devos c46c8531dd
gnu: python-h11: Respect "--without-tests".
* gnu/packages/python-web.scm
  (python-h11)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:09 +02:00
Maxime Devos a6e70f3f0c
gnu: python-hpack: Respect "--without-tests".
* gnu/packages/python-web.scm
  (python-hpack)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:05 +02:00
Maxime Devos a5a90a98d8
gnu: python-hyperframe: Respect "--without-tests".
* gnu/packages/python-web.scm
  (python-hyperframe)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:01 +02:00
Maxime Devos d0b3bb9df7
gnu: python-watchgod: Respect "--without-tests".
* gnu/packages/python-xyz.scm
  (python-watchgod)[arguments]<#:phases>{check}: Respect #:tests?.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:19:56 +02:00
Maxime Devos 3cd509bf66
gnu: python-pymediainfo: Respect "--without-tests".
* gnu/packages/python-xyz.scm
  (python-pymediainfo)[arguments]<#:phases>{check}: Respect
  #:tests?.  Don't bother returning #t as it isn't required
  anymore.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:19:32 +02:00
Brice Waegeneire 7bb9c3ebbb
gnu: kmod: Add zstd support.
* gnu/packages/linux.scm (kmod)[inputs]: Add zstd:lib.
[arguments]: Enable zstd support.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 19:21:11 +02:00
Brice Waegeneire 25041719da
gnu: kmod: Update to 29.
* gnu/packages/linux.scm (kmod): Update to 29.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 19:20:46 +02:00
Mathieu Othacehe beaa5dff38
gnu: zile-on-guile: Fix build.
This is a follow-up of da40d07066.

* gnu/packages/zile.scm (zile-on-guile)[arguments]: Restore the original
patch-/bin/sh phase.
2021-07-08 17:12:26 +02:00
Vinicius Monego 57a747e15a
gnu: Add python-cmaes.
* gnu/packages/machine-learning.scm (python-cmaes): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 16:49:06 +02:00
Maxime Devos 344316b455
gnu: xvfb-run: Fix ‘xvfb-run --help’ in a pure environment.
* gnu/packages/xorg.scm (xvfb-run)[arguments]: Refer to ‘cat’
  by absolute file name, and test whether ‘xvfb-run --help’
  succeeds in a pure environment in the ‘check’ phase.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 16:40:29 +02:00
Matthew James Kraai da40d07066
gnu: zile: Update to 2.6.2.
* gnu/packages/zile.scm (zile): Update to 2.6.2.
[arguments]: Adjust file list in custom 'patch-/bin/sh phase.
[inputs]: Add gee and glib.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 16:22:49 +02:00
Matthew James Kraai 64b8e004fd
gnu: xkbcomp: Update to 1.4.5.
* gnu/packages/xorg.scm (xkbcomp): Update to 1.4.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 16:18:10 +02:00
Nicolas Goaziou 2a1fde403d
gnu: emacs-chronometrist: Update to 0.9.0.
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): Update to 0.9.0.
[source]: Update upstream URL.
[inputs]: Add emacs-spark.  Remove emacs-anaphora and emacs-literate-elisp.
2021-07-08 15:32:40 +02:00
Nicolas Goaziou 7705edf39b
gnu: python-pikepdf: Update to 2.14.2.
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.14.2.
2021-07-08 15:10:45 +02:00
Nicolas Goaziou 95438b7a75
gnu: pinentry-bemenu: Fix license.
* gnu/packages/gnupg.scm (pinentry-bemenu)[license]: Use GPL 3+.
2021-07-08 15:07:42 +02:00
Nikita Domnitskii 8edb6778cf
gnu: Add pinentry-bemenu.
* gnu/packages/gnupg.scm (pinentry-bemenu): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-08 15:02:38 +02:00
Nikita Domnitskii c111fa6067
gnu: bemenu: Update to 0.6.2.
* gnu/packages/xdisorg.scm (bemenu): Update to 0.6.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-08 15:00:29 +02:00
Ludovic Courtès f670c11c5b
gnu: libdatrie: Turn configure flags into a gexp.
* gnu/packages/gtk.scm (libdatrie)[arguments]: Turn #:configure-flags
into a gexp.
2021-07-08 14:15:20 +02:00
Ludovic Courtès 5f919605e9
gnu: libdatrie: Run tests sequentially.
Fixes <https://bugs.gnu.org/49463>.

* gnu/packages/gtk.scm (libdatrie)[arguments]: Add #:parallel-tests?.
2021-07-08 14:12:05 +02:00
Efraim Flashner 94f772dad8
gnu: newsboat: Update to 2.24.
* gnu/packages/syndication.scm (newsboat): Update to 2.24.
[arguments]: Update rust to 1.48.
[cargo-inputs]: Replace rust-cxx-0.5 with 1, rust-gettext-rs-0.6 with
0.7.
[cargo-development-inputs]: Replace rust-cxx-build-0.5 with 1.
2021-07-08 10:55:30 +03:00
Efraim Flashner f28f095fbd
gnu: rust-once-cell-1: Update to 1.8.0.
* gnu/packages/crates-io.scm (rust-once-cell-1): Update to 1.8.0.
2021-07-08 10:55:30 +03:00
Jan (janneke) Nieuwenhuizen 9bd65f0583
gnu: mcrl2: Update to 202106.0.
* gnu/packages/maths.scm (mcrl2): Update to 202106.0.
2021-07-08 09:51:12 +02:00
Matthew James Kraai 0a04c25482
mailmap: Update entries for Matthew James Kraai.
* .mailmap: Change name for Matthew James Kraai.
* gnu/packages/lisp-xyz.scm, gnu/packages/python-xyz.scm,
gnu/packages/rust.scm: Likewise.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-08 09:48:22 +02:00
John Kehayias 87c974cdd1
gnu: darktable: Update to 3.6.0.
* gnu/packages/photo.scm (darktable): Update to 3.6.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-08 09:44:10 +02:00
Andrew Tropin 9381f1fa4a
gnu: Add emacs-consult-notmuch.
* gnu/packages/emacs-xyz.scm (emacs-consult-notmuch): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-08 09:36:49 +02:00
Matthew James Kraai 08f03de158
gnu: emacs-deadgrep: Add missing input.
* gnu/packages/emacs-xyz.scm (emacs-deadgrep)[inputs]: Add ripgrep.
[arguments]: Add configure phase to set deadgrep-executable to absolute path.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-08 09:32:02 +02:00
Efraim Flashner 49e2e75ced
gnu: %guile-3.0-static-stripped: Rename to %guile-static-stripped.
* gnu/packages/make-bootstrap.scm (%guile-3.0-static-stripped): Rename
to %guile-static-stripped.
(%guile-bootstrap-tarball): Adjust accordingly.
* gnu/system/linux-initrd.scm (expression->initrd): Use
%guile-static-stripped as default guile.
* doc/guix.texi (initial RAM disk)[expression->initrd]: Adjust
documentation accordingly.
2021-07-08 09:39:05 +03:00
Efraim Flashner e48cff0965
gnu: make-bootstrap: Use guile-3.0 bootstrap tarball.
* gnu/packages/make-bootstrap.scm (%guile-bootstrap-tarball): Use
guile-3.0.
(%guile-static-stripped): Remove variable.
2021-07-08 09:29:03 +03:00
Efraim Flashner f819b46acb
gnu: make-bootstrap: Build with gcc-7.
* gnu/packages/make-bootstrap.scm (gcc-for-bootstrap)[Inherit]: Inherit
from gcc-7.
[inputs]: Use package-inputs from gcc-7.
(package-with-relocatable-glibc)[native-inputs]: Have cross-gcc use
gcc-7.
(%gcc-static)[inherit]: Inherit from gcc-7.
[arguments]: Use package-arguments from gcc-7.
[inputs]: Replace isl-0.18 with isl. Use package-inputs from gcc-7.
[native-inputs]: Use package-native-inputs from gcc-7.
(%gcc-stripped)[inherit]: Inherit from gcc-7.
2021-07-08 09:28:38 +03:00
Ludovic Courtès 285f3b58c6
gnu: guile: Skip 'test-stack-overflow'.
* gnu/packages/guile.scm (guile-3.0)[arguments]: Add
'disable-stack-overflow-test' phase.
2021-07-08 00:28:57 +02:00
Ludovic Courtès 145a5a5797
gnu: glibc: Fix cross-compilation to powerpc64le-linux-gnu.
Fixes <https://bugs.gnu.org/49417>.
Reported by Maxime Devos <maximedevos@telenet.be>.

* gnu/packages/patches/glibc-cross-objcopy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
2021-07-08 00:28:56 +02:00
Nicolas Goaziou ac3444968a
gnu: python-pikepdf: Update to 2.14.1.
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.14.1.
2021-07-08 00:03:17 +02:00
Nicolas Goaziou 1d4decf4a2
gnu: giac: Update to 1.7.0-17.
* gnu/packages/algebra.scm (giac): Update to 1.7.0-17.
2021-07-07 23:03:25 +02:00
Nicolas Goaziou 30c6b6ccb4
gnu: emacs-pyim: Update to 3.9.0.
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.0.
2021-07-07 22:53:54 +02:00
Leo Famulari 99aecc0988
gnu: VTK 8: Re-fix a build failure with recent versions of freetype.
* gnu/packages/patches/vtk-8-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image-processing.scm (vtk-8): Dis-inherit from VTK. Use the
package definition that predated the update to VTK 9, taken from commit
f4dc8ac6df.
2021-07-07 16:50:21 -04:00
Tobias Geerinckx-Rice 32480e1903
gnu: kicad-doc: Remove unnecessary code.
* gnu/packages/engineering.scm (arguments): Skip #:tests? instead of
deleting the 'check phase.  Remove the 'set-perl-env phase.
2021-07-07 21:26:55 +02:00
Tobias Geerinckx-Rice dbf78e3985
gnu: kicad-doc: Fix build.
Fixes <https://issues.guix.gnu.org/49458>.

* gnu/packages/engineering.scm (native-inputs): Add perl-yaml-tiny.
2021-07-07 21:26:55 +02:00
Raghav Gururajan 02562e2f1e
services: Add bitmask-service-type.
* gnu/services/vpn.scm (bitmask-service-type): New variable.
* doc/guix.texi: Document it.

Co-authored-by: jgart <jgart@dismail.de>
2021-07-07 10:20:28 -04:00
Raghav Gururajan b30651aeca
gnu: Add bitmask.
* gnu/packages/vpn.scm (bitmask): New variable.

Co-authored-by: jgart <jgart@dismail.de>
2021-07-07 09:41:22 -04:00
Raghav Gururajan e6ea0abd93
gnu: Add go-0xacab-org-leap-shapeshifter.
* gnu/packages/golang.scm (go-0xacab-org-leap-shapeshifter): New variable.
2021-07-07 09:41:22 -04:00
Raghav Gururajan 2fa52c8a90
gnu: Add go-github-com-operatorfoundation-shapeshifter-transports.
* gnu/packages/golang.scm (go-github-com-operatorfoundation-shapeshifter-transports): New variable.
2021-07-07 09:41:22 -04:00
Raghav Gururajan d28eacb011
gnu: Add go-github-com-kataras-golog.
* gnu/packages/golang.scm (go-github-com-kataras-golog): New variable.
2021-07-07 09:41:22 -04:00
Raghav Gururajan 56835ab730
gnu: Add go-github-com-kataras-pio.
* gnu/packages/golang.scm (go-github-com-kataras-pio): New variable.
2021-07-07 09:41:21 -04:00
Raghav Gururajan 62646d768d
gnu: Add go-github-com-shadowsocks-go-shadowsocks2.
* gnu/packages/golang.scm (go-github-com-shadowsocks-go-shadowsocks2): New variable.
2021-07-07 09:41:21 -04:00