45695cc8a7
Revert "gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363]."
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In response to commit 1a265842e6https://bugs.gnu.org/47186 >.
This reverts commit db87d6ddaf
2021-03-18 11:26:11 +01:00
2e0ff59f0c
gnu: imagemagick/fixed: Redirect old sonames to new sonames.
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* gnu/packages/imagemagick.scm (imagemagick/fixed)[arguments]: Add
'fix-compat-cheat-rename-so phase to redirect old soname paths (expected
without grafting) to new sonames introduced by ImageMagick 6.9.12-0 and
later. These sonames are probably not forward compatible but most probably
backwards compatible so it should suffice until we remove the graft.
2021-03-18 11:13:18 +01:00
334c6850c6
gnu: linux-libre 4.4: Update to 4.4.262.
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* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.262.
(linux-libre-4.4-pristine-source): Update hash.
2021-03-18 01:05:49 -04:00
c3504337cc
gnu: linux-libre 4.9: Update to 4.9.262.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.262.
(linux-libre-4.9-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
d72347deec
gnu: linux-libre 4.14: Update to 4.14.226.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.226.
(linux-libre-4.14-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
1ff0377a52
gnu: linux-libre 4.19: Update to 4.19.181.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.181.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
1de35e8036
gnu: linux-libre 5.4: Update to 5.4.106.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.106.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
e0dcafc1c2
gnu: linux-libre 5.10: Update to 5.10.24.
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* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.24.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
aacfbb8c24
gnu: linux-libre: Update to 5.11.7.
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* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.7.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
966e61fb8f
gnu: Add libucl.
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* gnu/packages/wm.scm (libucl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 23:10:20 +01:00
ce10e2b3e9
gnu: Use autoconf instead of autoconf-wrapper when possible.
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This should reduce confusion on when to use the "autoconf"
package and when to use "autoconf-wrapper" instead in
package definitions.
Fixes <https://bugs.gnu.org/46564 >.
* gnu/packages/autotools.scm (autoconf-wrapper):
advise to use the "autoconf" package instead where
possible.
* gnu/packages/game-development.scm (tsukundere)[native-inputs]:
use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/gimp.scm
(glimpse)[native-inputs]: likewise.
(gimp-resynthesizer)[native-inputs]: add comment on why
"autoconf-wrapper" is used.
* gnu/packages/gnunet.scm (gnunet)[native-inputs]:
use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/gnupg.scm (signing-party)[native-inputs]:
add comment on why "autoconf-wrapper" is used.
* gnu/packages/guile-xyz.scm
(guile-bash,guile-filesystem,guile-ics,guile-udev)[native-inputs]:
use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/libevent.scm (libuv)[native-inputs]: indicates
"autoconf-wrapper" needs to be replaced with "autoconf"
on core-updates.
* gnu/packages/logging.scm (glog)[native-inputs]: use "autoconf"
instead of "autoconf-wrapper".
* gnu/packages/mail.scm (libetpan)[native-inputs]: likewise.
* gnu/packages/mate.scm
(mate-icon-theme-faenza)[native-inputs]: add comment on why
"autoconf-wrapper" is used.
(mate-screensaver)[native-inputs]: use "autoconf" instead of
"autoconf-wrapper".
* gnu/packages/package-management.scm (guix)[native-inputs]: likewise.
* gnu/packages/sawfish.scm (librep)[native-inputs]: likewise.
* gnu/packages/video.scm (motion)[native-inputs]: likewise.
* gnu/packages/zile.scm (zile)[native-inputs]: likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 23:10:19 +01:00
24f1ce9e71
gnu: scdoc: Cross-compile.
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* gnu/packages/man.scm (scdoc)[arguments]: Use CC-FOR-TARGET.
2021-03-17 21:22:21 +01:00
841e5fb4dd
gnu: scdoc: Don't use unstable tarball.
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The autogenerated tarball was modified upstream.
* gnu/packages/man.scm (scdoc)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2021-03-17 21:22:20 +01:00
d7b4ccefa9
gnu: libtirpc/hurd: Fix package source.
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Amend the changes in 1a265842e6
2021-03-17 20:15:15 +00:00
f4f677f223
gnu: lua.scm: Sort package module imports alphabetically.
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* gnu/packages/lua.scm: Sort package module imports alphabetically.
2021-03-17 21:33:01 +02:00
2691f57678
gnu: python-pygments: Update to 2.7.4 [fixes CVE-2021-27291].
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* gnu/packages/python-xyz.scm (python-pygments/fixed): New variable.
(python-pygments)[replacement]: Graft.
2021-03-17 18:36:47 +01:00
cb424bad32
gnu: Add emacs-kotlin-mode.
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* gnu/packages/emacs-xyz.scm (emacs-kotlin-mode): New variable.
2021-03-17 18:48:06 +03:00
d79d63e782
gnu: emacs-marginalia: Update to 0.4.
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* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.4.
2021-03-17 14:32:45 +01:00
284864df91
gnu: komikku: Update to 0.27.0.
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* gnu/packages/gnome.scm (komikku): Update to 0.27.0.
[inputs]: Add python-brotli and webkitgtk.
2021-03-17 14:21:30 +01:00
fef91c0cc8
gnu: Move lolcode to esolangs.
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* gnu/packages/lolcode.scm (lci): Move from here...
* gnu/packages/esolangs.scm (lolcode-lci): ... to here.
* gnu/packages/lolcode.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2021-03-17 14:21:29 +01:00
d45d779e2a
gnu: tig: Update to 2.5.3.
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* gnu/packages/version-control.scm (tig): Update to 2.5.3.
Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: donotshake <donotshake:matrix.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 12:03:25 +01:00
fe96f64110
gnu: hwloc: Add 'release-monitoring-url' property.
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* gnu/packages/mpi.scm (hwloc-1)[properties]: New field.
2021-03-17 12:03:25 +01:00
f194fbf50e
gnu: gnome-autoar: Update to 0.3.1 [fixes CVE-2021-28650].
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* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.1.
2021-03-17 11:39:01 +01:00
b26f958620
gnu: pzstd: Update to 1.4.9 [fixes CVE-2021-24032].
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* gnu/packages/compression.scm (pzstd): Use 'package/inherit' over zstd so any
graft applied to zstd cascades onto pzstd which is built from the same
source.
2021-03-17 10:58:29 +01:00
1a265842e6
gnu: Use PACKAGE/INHERIT in more places.
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* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-17 03:58:10 -04:00
d9f501b619
gnu: gvfs: Add 'lint-hidden-cve' property.
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* gnu/packages/gnome.scm (gvfs)[properties]: New field, marking
CVE-2019-12447, CVE-2019-12448, and CVE-2019-12449 as fixed.
2021-03-16 22:38:18 -04:00
c3fe23d0de
gnu: gnome-shell: Add 'lint-hidden-cve' property.
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* gnu/packages/gnome.scm (gnome-shell)[properties]: New field, marking
CVE-2019-3820 as fixed.
2021-03-16 22:38:12 -04:00
15423d38c5
gnu: qemu: Enable reproducible builds.
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Fixes <https://issues.guix.gnu.org/47176 >. The solution was suggested by
bonzini on OFTC's #qemu channel.
* gnu/packages/virtualization.scm (qemu)[snippet]: Delete bundled meson copy.
[native-inputs]: Add meson-next.
2021-03-16 16:21:28 -04:00
f4259f93ea
gnu: Add meson-next.
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* gnu/packages/build-tools.scm (meson-next): New variable.
2021-03-16 16:21:27 -04:00
109f58444b
gnu: mpg321: Fix CVE-2019-14247.
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* gnu/packages/patches/mpg321-CVE-2019-14247.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mp3.scm (mpg321)[source]: Apply it.
Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-16 19:12:36 +01:00
82a9538ea0
gnu: varnish-modules: Update to 0.17.1 [fixes CVE-2021-28543].
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* gnu/packages/web.scm (varnish-modules): Update to 0.17.1.
2021-03-16 18:41:41 +01:00
09b5cdf80d
gnu: tor: Update to 0.4.5.7 [security fixes].
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* gnu/packages/tor.scm (tor): Update to 0.4.5.7.
2021-03-16 15:26:33 +02:00
4f02c4c4a9
gnu: snakemake: Add missing inputs.
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* gnu/packages/python-xyz.scm (snakemake)[propagated-inputs]: Add
python-nbformat, python-pulp, and python-toposort.
2021-03-16 14:17:48 +01:00
08447ab7cd
gnu: Add python-toposort.
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* gnu/packages/python-xyz.scm (python-toposort): New variable.
2021-03-16 14:17:48 +01:00
fa0a18522d
gnu: Add python-pulp.
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* gnu/packages/python-xyz.scm (python-pulp): New variable.
2021-03-16 14:17:47 +01:00
c9006a0ee1
gnu: Add python-amply.
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* gnu/packages/python-xyz.scm (python-amply): New variable.
2021-03-16 14:17:47 +01:00
55ef497479
gnu: emacs-easy-kill: Update to 0.9.4.
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* gnu/packages/emacs-xyz.scm (emacs-easy-kill): Update to 0.9.4.
2021-03-16 14:11:14 +01:00
2724f1b231
gnu: emacs-leaf: Update to 4.4.0.
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* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.0.
2021-03-16 14:10:17 +01:00
c954f795f9
gnu: python-pikepdf: Update to 2.9.0.
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* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.0.
2021-03-16 14:09:06 +01:00
335af327cd
gnu: asymptote: Update to 2.70.
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* gnu/packages/plotutils.scm (asymptote): Update to 2.70.
2021-03-16 14:06:40 +01:00
451f23df5e
gnu: b4: Fix setup.py version incompatibility.
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* gnu/packages/version-control.scm (b4)[source]: Add snippet to not
require too specific of a version.
Reported-by: Kyle Meyer <kyle@kyleam.com>
2021-03-16 14:28:25 +02:00
9bab0950f7
gnu: libmemcached: Disable test suite.
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* gnu/packages/databases.scm (libmemcached): Disable test suite. Removing
trailing #t.
[phases]{fix-configure}: Remove useless group in pattern.
{disable-failing-tests}: Remove phase.
{build-and-install-html-doc}: Order after the build phase.
[home-page]: Please 'guix lint'.
Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
2021-03-16 07:46:20 -04:00
fcf8c6c565
gnu: hisat2: Update to 2.2.1.
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* gnu/packages/bioinformatics.scm (hisat2): Update to 2.2.1.
[source]: Fetch from git repository on Github.
[arguments]: Add phase to build manual; remove trailing #t from other phases.
[native-inputs]: Remove unzip.
[home-page]: Update.
[inputs]: Add python-wrapper.
2021-03-16 11:12:01 +01:00
097cf21d1d
gnu: Remove MongoDB.
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mongodb 3.4.10 has unpatched CVEs and mongodb 3.4.24 has some files in the
release tarball under the SSPL, therefore we cannot provide mongodb while
upholding to good security standards.
It turns out feff80cec3
2021-03-16 11:05:24 +01:00
0ee5d4f7a8
gnu: git: Fix git-manpages native input's hash.
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This is a follow-up to commit ab9629b7c9
2021-03-16 10:58:36 +01:00
ab9629b7c9
gnu: git: Update to 2.31.0.
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* gnu/packages/version-control.scm (git): Update to 2.31.0.
2021-03-16 10:52:11 +01:00
db87d6ddaf
gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363].
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* gnu/packages/python-web.scm (python2-urllib3)[base]: Base off of
python-urllib3/fixed.
2021-03-16 09:25:02 +01:00
a01bfa7dee
gnu: python-urllib3: Update to 1.26.4 [fixes CVE-2021-28363].
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* gnu/packages/python-web.scm (python-urllib3/fixed): New variable.
(python-urllib3)[replacement]: Graft.
2021-03-16 08:59:38 +01:00
e5fcfb82e0
gnu: tmsu: Improve installation.
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* gnu/packages/file-systems.scm (tmsu)[arguments]: Don't install go
source files. Install binary as tmsu instead of TMSU.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-16 09:37:16 +02:00
3679286bb4
gnu: glances: Update to 3.1.6.
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* gnu/packages/python-xyz.scm (glances): Update to 3.1.6.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-16 09:34:41 +02:00
Léo Le Bouter
Leo Famulari
qblade
Maxime Devos
Tobias Geerinckx-Rice
Christopher Baines
Efraim Flashner
Oleg Pykhalov
Nicolas Goaziou
Leo Prikler
LibreMiami
Ludovic Courtès
Mark H Weaver
Maxim Cournoyer
Kei Kebreau
Ricardo Wurmus
Stefan Reichör