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34629 Commits (45c78bf92487fbc659593a9ae75f15281a1068b7)

Author SHA1 Message Date
Tobias Geerinckx-Rice 7138c48e6e
gnu: r-survival: Update to 2.42-6. 
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
 2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice 311f06c94a
gnu: Add sqlcrush. 
* gnu/packages/databases.smc (sqlcrush): New public variable.
 2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice 9763102bd7
gnu: Add python-pymysql. 
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
 2018-08-22 00:03:43 +02:00
Raphaël Mélotte f998453559
gnu: luakit: Fix crash on startup. 
* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the
  wrapping phase.

This fixes a crash when no configuration file is present in the user's home
directory. It allows luakit to use it's own default configuration files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-08-21 23:27:09 +02:00
Ludovic Courtès c305ac30c3
gnu: guile-ssh: Don't build libguile-ssh.a. 
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
 2018-08-21 23:27:08 +02:00
Ludovic Courtès f7dfda2c73
gremlin: 'elf-dynamic-info-needed' test is no longer skipped. 
* tests/gremlin.scm (%guile-executable): Use /proc/self/exe instead
of (command-line).  For a while now, the first element of (command-line)
was "./build-aux/test-driver.scm"; consequently the test was always
skipped.
 2018-08-21 23:27:08 +02:00
Ludovic Courtès f43d2dcd80
linux-modules: Adjust 'section-contents' procedure. 
* gnu/build/linux-modules.scm (section-contents): Honor SECTION as was
intended.
(modinfo-section-contents): Pass 'section-contents' a section, not a
section name.
 2018-08-21 23:27:08 +02:00
Ludovic Courtès a81b59b1bf
inferior: Adjust for Guile 2.0. 
Partly fixes <https://bugs.gnu.org/32326>.
Reported by Michael Bowcutt <mbowcutt@riseup.net>.

* guix/inferior.scm (open-inferior): Wrap 'setvbuf' call in 'cond-expand'.
 2018-08-21 23:27:08 +02:00
Marius Bakke fdb222033c
gnu: gdbm: Update to 1.18. 
* gnu/packages/databases.scm (gdbm): Update to 1.18.
 2018-08-21 17:25:23 +02:00
Marius Bakke 25febeedc6
gnu: python-numpydoc: Update to 0.8.0. 
* gnu/packages/python.scm (python-numpydoc): Update to 0.8.0.
[source](uri): Use PYPI-URI.
[source](snippet): Remove.
 2018-08-21 17:24:31 +02:00
Marius Bakke 7eab5e7377
gnu: python-greenlet: Update to 0.4.14. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.14.
 2018-08-21 17:24:31 +02:00
Marius Bakke a8c9321368
gnu: cups-filters: Update to 1.21.0. 
* gnu/packages/cups.scm (cups-filters): Update to 1.21.0.
 2018-08-21 17:24:31 +02:00
Marius Bakke 3bbfc451ed
gnu: python-sphinx: Update to 1.7.7. 
* gnu/packages/openstack.scm (python-mox3, python-openstackdocstheme,
  python-stevedore, python-oslo.config)[native-inputs]: Change
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
* gnu/packages/python.scm (python-sphinx): Update to 1.7.7.
[arguments]: Incorporate changes from the 1.6 variant.  Disable two tests.
[propagated-inputs]: Add PYTHON-PACKAGING and PYTHON-SPHINXCONTRIB-WEBSUPPORT.
[native-inputs]: Add IMAGEMAGICK and PYTHON-PYTEST.
(python2-sphinx)[propagated-inputs]: Add PYTHON2-TYPING.
(python-sphinx-1.6, python2-sphinx-1.6, python-sphinx-1.5.3): Remove variables.
(python-matplotlib-documentation)[native-inputs]: Change from
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
 2018-08-21 17:24:31 +02:00
Marius Bakke f70785a4c0
gnu: python-sphinxcontrib-websupport: Add a python2 variant. 
* gnu/packages/python.scm (python2-sphinxcontrib-websupport): New public variable.
 2018-08-21 17:24:31 +02:00
Marius Bakke f65ef00556
gnu: python-sphinxcontrib-websupport: Update to 1.1.0. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport): Update to 1.1.0.
 2018-08-21 17:24:31 +02:00
Marius Bakke 5f2707a255
gnu: python-sphinxcontrib-websupport: Disable tests. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport)[arguments]: New
field.
[native-inputs, inputs]: Remove.
 2018-08-21 17:24:31 +02:00
Marius Bakke efada0946d
gnu: python-jinja2: Update to 2.10. 
* gnu/packages/python.scm (python-jinja2): Update to 2.10.
 2018-08-21 17:24:30 +02:00
Marius Bakke 88166588a0
gnu: python-babel: Run the tests. 
* gnu/packages/python.scm (python-babel)[native-inputs]: Add PYTHON-FREEZEGUN
and PYTHON-PYTEST.
[arguments]: Replace 'check' phase.  Remove #:tests?.
 2018-08-21 17:24:30 +02:00
Marius Bakke b3a21b2cf9
gnu: python-babel: Update to 2.6.0. 
* gnu/packages/python.scm (python-babel): Update to 2.6.0.
 2018-08-21 17:24:30 +02:00
Marius Bakke cb5ba282cc
gnu: python-pytz: Update to 2018.5. 
* gnu/packages/time.scm (python-pytz): Update to 2018.5.
[source](uri): Update file extension.
[native-inputs]: Remove.
 2018-08-21 17:24:30 +02:00
Marius Bakke 2be1b754ba
gnu: python-sqlalchemy: Update to 1.2.11. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.2.11.
 2018-08-21 17:24:30 +02:00
Marius Bakke 9871a896aa
gnu: python-sqlalchemy: Use 'invoke'. 
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Use INVOKE
instead of SYSTEM*.
 2018-08-21 17:24:30 +02:00
Marius Bakke 632900f586
gnu: python-packaging: Run the tests. 
* gnu/packages/python.scm (python-packaging)[arguments]: Override 'check' phase.
 2018-08-21 17:24:30 +02:00
Marius Bakke c52ff2ed76
gnu: python-packaging: Update to 17.1. 
* gnu/packages/python.scm (python-packaging): Update to 17.1.
 2018-08-21 17:24:30 +02:00
Marius Bakke 26aef5e956
gnu: python-imagesize: Fix typo. 
* gnu/packages/python.scm (python-imagesize)[synopsis]: Remove stray character.
 2018-08-21 17:24:29 +02:00
Marius Bakke 4c36fc7051
gnu: python-imagesize: Update to 1.0.0. 
* gnu/packages/python.scm (python-imagesize): Update to 1.0.0.
[arguments]: Remove.
 2018-08-21 17:24:29 +02:00
Marius Bakke 9764dac511
gnu: python-markupsafe: Update to 1.0. 
* gnu/packages/python.scm (python-markupsafe): Update to 1.0.
 2018-08-21 17:24:29 +02:00
Marius Bakke 4750b3a268
gnu: python-pytest: Run the tests again. 
"python setup.py test" is ineffective since 3.6.x.  The circle is complete.

* gnu/packages/check.scm (python-pytest)[arguments]: Override 'check' phase.
[native-inputs]: Add PYTHON-PYTEST-BOOTSTRAP.
 2018-08-21 17:24:29 +02:00
Marius Bakke e2c7b7bb68
gnu: libssh2: MIPS workaround no longer is. 
* gnu/packages/ssh.scm (libssh2)[arguments]: Override the 'bootstrap' phase
regardless of target system.  Remove 'autoreconf' phase.
 2018-08-21 17:24:29 +02:00
Marius Bakke 7b0faf32e9
gnu: pango: Update to 1.42.4. 
* gnu/packages/gtk.scm (pango): Update to 1.42.4.
 2018-08-21 17:24:29 +02:00
Marius Bakke 1935b8d56a
gnu: libffi: Don't optimize for the build machine CPU. 
* gnu/packages/libffi.scm (libffi)[arguments]: Add #:configure-flags.
 2018-08-21 17:24:29 +02:00
Marius Bakke e63199ec68
gnu: libatomic-ops: Update to 7.6.6. 
* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.6.6.
 2018-08-21 17:24:29 +02:00
Marius Bakke 827509a30c
gnu: python-olefile: Update to 0.45.1. 
* gnu/packages/python.scm (python-olefile): Update to 0.45.1.
 2018-08-21 17:24:28 +02:00
Marius Bakke d76cd3defd
gnu: python-lxml: Update to 4.2.4. 
* gnu/packages/python.scm (python-lxml): Update to 4.2.4.
 2018-08-21 17:24:28 +02:00
Marius Bakke f6cd3f7970
gnu: python-ipaddress: Update to 1.0.22. 
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.22.
 2018-08-21 17:24:28 +02:00
Marius Bakke c69d231c2a
gnu: python-pycparser: Update to 2.18. 
* gnu/packages/python.scm (python-pycparser): Update to 2.18.
 2018-08-21 17:24:28 +02:00
Marius Bakke b3751f9cea
gnu: python-setuptools-scm: Update to 3.1.0. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 3.1.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke 67a7da1f31
gnu: python-hypothesis: Update to 3.68.2. 
* gnu/packages/check.scm (python-hypothesis): Update to 3.68.2.
 2018-08-21 17:24:28 +02:00
Marius Bakke e241f9a020
gnu: python-more-itertools: Update to 4.3.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.3.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke 7f5d3445af
gnu: python-scandir: Update to 1.9.0. 
* gnu/packages/python.scm (python-scandir): Update to 1.9.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke e2da8bcd9e
gnu: python-pytest: Update to 3.7.2. 
* gnu/packages/check.scm (python-pytest): Update to 3.7.2.
(python2-pytest)[propagated-inputs]: Add PYTHON2-PATHLIB.
(python2-pytest-bootstrap)[propagated-inputs]: Add PYTHON-PATHLIB2-BOOTSTRAP.
* gnu/packages/python.scm (python2-pathlib2-bootstrap): New public variable.
 2018-08-21 17:24:28 +02:00
Marius Bakke 27885fcc26
gnu: python-pluggy: Update to 0.7.1. 
* gnu/packages/python.scm (python-pluggy): Update to 0.7.1.
[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-08-21 17:24:27 +02:00
Marius Bakke fdf16a81b2
gnu: graphite2: Update to 1.3.12. 
* gnu/packages/fontutils.scm (graphite2): Update to 1.3.12.
 2018-08-21 17:24:27 +02:00
Marius Bakke 85932a7b8e
gnu: libuv: Update to 1.23.0. 
* gnu/packages/libevent.scm (libuv): Update to 1.23.0.
 2018-08-21 17:24:27 +02:00
Marius Bakke 1c61a086bc
gnu: expat: Update to 2.2.6. 
* gnu/packages/xml.scm (expat): Update to 2.2.6.
 2018-08-21 17:24:27 +02:00
Marius Bakke f203e53386
gnu: cmake: Update to 3.12.1. 
* gnu/packages/cmake.scm (cmake): Update to 3.12.1.
 2018-08-21 17:24:27 +02:00
Marius Bakke 09118c58da
gnu: glib: Update to 2.56.2. 
* gnu/packages/glib.scm (glib): Update to 2.56.2.
 2018-08-21 17:24:27 +02:00
Marius Bakke a5dae0c03c
gnu: dbus: Update to 1.12.10. 
* gnu/packages/glib.scm (dbus): Update to 1.12.10.
 2018-08-21 17:24:27 +02:00
Marius Bakke 11e5bf70d5
gnu: harfbuzz: Update to 1.8.8. 
* gnu/packages/gtk.scm (harfbuzz): Update to 1.8.8.
 2018-08-21 17:24:27 +02:00
Marius Bakke 3f35e0da86
gnu: bootstrap-tarballs: Adjust to static outputs of zlib and libunistring. 
* gnu/packages/make-bootstrap.scm (%gcc-static)[inputs]: Add ZLIB:STATIC.
(%guile-static)[inputs]: Add LIBUNISTRING:STATIC.
 2018-08-21 17:24:26 +02:00