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725 Commits (45f7dc37c6bbbd334bc2fed8f088f94b32971948)

Author SHA1 Message Date
Marius Bakke cbe96f1470
Merge branch 'master' into staging 2020-07-24 23:53:17 +02:00
Ricardo Wurmus cd005bfea5
gnu: java-cisd-jhdf5: Update location of commons-io jar.
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Update location of
commons-io jar.
2020-07-20 12:45:53 +02:00
Ricardo Wurmus 3448c7eda3
gnu: java-cisd-base: Update location of commons-io jar.
* gnu/packages/java.scm (java-cisd-base)[arguments]: Update location of
commons-io jar.
2020-07-20 12:45:53 +02:00
Julien Lepiller 7bbe61f8ff
gnu: java-hamcrest-library: Fix race condition.
* gnu/packages/java.scm (java-hamcrest-library)[arguments]: Fix
build.xml in the same way it is fixed in java-hamcrest-all to prevent a
race condition.
2020-07-18 13:28:11 +02:00
Efraim Flashner 2be973c35e
gnu: java-guava: Use a source file-name.
* gnu/packages/java.scm (java-guava)[source]: Add a file-name field.
2020-07-17 14:58:11 +03:00
Julien Lepiller b777e19437
gnu: Add maven-surefire-common.
* gnu/packages/maven.scm (maven-surefire-common): New variable.
* gnu/packages/java.scm (java-hawtjni, java-jansi-native, java-jansi):
Install from pom file.
2020-07-17 04:21:13 +02:00
Julien Lepiller 90a1d04cc1
gnu: Add java-plexus-compiler-manager.
* gnu/packages/java.scm (java-plexus-compiler-manager): New variable.
(java-plexus-compiler-api, java-plexus-compiler-javac): Install from pom
file.
(java-plexus-compiler-javac): Install plexus components file.
2020-07-17 04:19:58 +02:00
Julien Lepiller 8630a08099
gnu: add java-plexus-java.
* gnu/packages/java.scm (java-plexus-java): New variable.
2020-07-17 04:19:45 +02:00
Julien Lepiller 015e8774b7
gnu: java-plexus-component-metadata: Move to java.scm.
* gnu/packages/maven.scm (maven-core-bootstrap): Make public and hidden.
(java-plexus-component-metadata): Move to ...
* gnu/packages/java.scm: ... here.
2020-07-17 04:19:24 +02:00
Julien Lepiller 0ab9eba78e
gnu: Add java-qdox-2-M9.
* gnu/packages/java.scm (java-qdox-2-M9): New variable.
(java-qdox): Install from pom file.
2020-07-17 04:19:12 +02:00
Julien Lepiller f0e3e6caa3
gnu: Add maven-filtering.
* gnu/packages/maven.scm (maven-filtering): New variable.
* gnu/packages/java.scm (java-sisu-build-api): Install from pom file.
2020-07-17 04:18:56 +02:00
Julien Lepiller 6a25a3b1ba
gnu: Add java-plexus-digest.
* gnu/packages/java.scm (java-plexus-digest): New variable.
2020-07-17 04:15:13 +02:00
Julien Lepiller 29534ff7f3
gnu: java-modello-core: Propagate inputs.
* gnu/packages/java.scm (java-modello-core): Propagate inputs.
(java-modello-plugins-java, java-modello-plugins-xml, java-modello-xpp3):
Remove java-modello-core's inputs and propagate.
2020-07-17 04:15:05 +02:00
Julien Lepiller 51087d51df
gnu: maven: Install from pom file.
* gnu/packages/java.scm (java-plexus-container-default-bootstrap)
(java-plexus-component-annotations, java-plexus-cipher, java-asm)
(java-jsr250, java-commons-cli, java-slf4j-api, java-slf4j-simple)
(java-bsh, java-jboss-el-api-spec, java-jboss-interceptors-api-spec)
(java-cdi-api, java-eclipse-sisu-plexus): Install from pom file.
* gnu/packages/maven.scm (maven-resolver-api, maven-resolver-spi)
(maven-resolver-util, maven-resolver-connector-basic, maven-resolver-impl)
(java-plexus-utils, maven-artifact, maven-model, maven-builder-support)
(maven-settings, maven-settings-builder, maven-model-builder)
(maven-repository-metadata, maven-resolver-provider, maven-plugin-api)
(maven-core, maven-embedder, maven-compat): Install from pom file.
2020-07-17 04:14:45 +02:00
Julien Lepiller 968bb68275
gnu: java-httpcomponents-httpclient: Update to 4.5.12.
* gnu/packages/java.scm (java-httpcomponents-httpclient): Update to
4.5.12.
2020-07-17 04:14:37 +02:00
Julien Lepiller 6671d6a14e
gnu: java-plexus-interpolation: Update to 1.26.
* gnu/packages/java.scm (java-plexus-interpolation): Update to 1.26.
2020-07-17 04:14:15 +02:00
Julien Lepiller b8d977b154
gnu: java-bsh: Unbundle third-party libraries.
* gnu/packages/java.scm (java-bsh)[source]: Remove bundled jar files.
2020-07-17 04:13:51 +02:00
Julien Lepiller aabaac7d85
gnu: Add javacc-3.
* gnu/packages/java.scm (javacc-3): New variable.
2020-07-17 04:13:41 +02:00
Julien Lepiller 02ed96dccf
gnu: java-plexus-archiver: Update to 4.2.2.
* gnu/packages/java.scm (java-plexus-archiver): Update to 4.2.2.
(java-plexus-container-default, java-commons-compress)
(java-geronimo-xbean-reflect): Install from pom file.
(java-guava): Install from pom
[source]: Use git source instead of generated source jar.
* gnu/packages/java-compression.scm (java-xz, java-iq80-snappy): Install
from pom.
2020-07-17 04:12:43 +02:00
Julien Lepiller ae91309642
gnu: java-plexus-classworlds: Update to 2.6.0.
* gnu/packages/java.scm (java-plexus-classworlds): Update to 2.6.0.
2020-07-17 04:12:25 +02:00
Julien Lepiller 79265a4598
gnu: java-plexus-io: Update to 3.2.0.
* gnu/packages/java.scm (java-plexus-io): Update to 3.2.0.
(java-commons-io)[arguments]: Install from pom file.
2020-07-17 04:12:17 +02:00
Julien Lepiller 2ddf13aed2
gnu: Add java-plexus-utils-3.3.0.
* gnu/packages/java.scm (java-plexus-utils-3.3.0): New variable.
2020-07-17 04:12:15 +02:00
Julien Lepiller b3971a5c47
gnu: java-plexus-utils: Update to 3.2.1.
* gnu/packages/java.scm (java-plexus-utils): Update to 3.2.1.
2020-07-17 04:12:13 +02:00
Julien Lepiller ba03666d29
gnu: java-commons-codec: Update to 1.14.
* gnu/packages/java.scm (java-commons-codec): Update to 1.14.
2020-07-17 04:12:11 +02:00
Julien Lepiller b916b6382e
gnu: java-commons-lang3: Update to 3.9.
* gnu/packages/java.scm (java-commons-lang3): Update to 3.9.
2020-07-17 04:12:07 +02:00
Julien Lepiller fff4fcc4e2
gnu: java-junit: Install from pom file.
* gnu/packages/java.scm (java-junit)[arguments]: Replace install phase.
(java-hamcrest-core)[arguments]: Replace install phase.
(java-hamcrest-library)[arguments]: Replace install phase.
(java-cisd-jhdf5, java-commons-math3, java-commons-collections4)
(java-commons-io, java-commons-exec-1.1, java-commons-exec)
(java-commons-lang3, java-commons-codec, java-native-access)
(java-native-access-platform, java-hamcrest-all): Change junit and hamcrest
jar location accordingly.
(java-hamcrest-all): Use old install phase of java-hamcrest-core.
* gnu/packages/maths.scm (java-hdf): Change junit and hamcrest jar
location accordingly.
2020-07-17 04:10:51 +02:00
Julien Lepiller e0ee843f77
gnu: java-jarjar: unbundle maven-plugin-api.
* gnu/packages/java.scm (java-jarjar): Unbundle maven-plugin-api.
2020-07-17 04:10:46 +02:00
Julien Lepiller 29428e10b8
gnu: java-junit: Enable tests.
* gnu/packages/java.scm (java-junit)[arguments]: Enable tests.
2020-07-17 04:10:42 +02:00
Julien Lepiller 031516d69a
gnu: Add java-hamcrest-library.
* gnu/packages/java.scm (java-hamcrest-library): New variable.
2020-07-17 04:10:40 +02:00
Julien Lepiller 30b7704a57
gnu: java-asm: Remove dependency on bnd libraries.
* gnu/packages/java.scm (java-asm): Remove dependency on java-aqute-bndlib
and java-aqute-libg.
(java-slf4j-api-bootstrap, java-aqute-bndlib-bootstrap)
(java-aqute-libg-bootstrap): Remove unused variables.
2020-07-17 04:10:38 +02:00
Tobias Geerinckx-Rice c4944d6c81
gnu: java-xmlunit: Use HTTPS home page.
* gnu/packages/java.scm (java-xmlunit)[home-page]: Use HTTPS.
2020-07-16 20:12:07 +02:00
Tobias Geerinckx-Rice 702a101257
gnu: Use HTTPS for github.com (and subdomains) home pages.
* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and
follow permanent redirection.
* gnu/packages/check.scm (python-codecov, python-nosexcover)
[home-page]: Likewise.
* gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr)
[home-page]: Likewise.
* gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1)
(rust-objc-0.2, rust-objc-exception-0.1)
(rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0)
(rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1)
[home-page]: Likewise.
* gnu/packages/finance.scm (ledger-agent, keepkey-agent)
[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-tasty-expected-failure)
[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp)
(ghc-warp-tls)[home-page]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags)
(ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir)
(ghc-pretty-show)[home-page]: Likewise.
* gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise.
* gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise.
* gnu/packages/linux.scm (procenv)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd)
(python-pycares)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-progressbar33, python-whatever)
(python-funcy)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby)
(ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
2020-07-16 20:12:06 +02:00
Ludovic Courtès b0e7b6992f
gnu: Remove ".git" from "https://github/…/….git".
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs.  Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.

* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
2020-07-12 23:08:15 +02:00
Simon South 2995be77e1
gnu: jamvm: Add aarch64-linux support.
* gnu/packages/java.scm (classpath-devel)[source]: Add (existing)
patch.
(jamvm)[source]: Add patches.
[arguments]: Inherit non-overridden arguments (particularly #:phases)
from jamvm-1-bootstrap.
* gnu/packages/patches/jamvm-2.0.0-aarch64-support.patch: New file.
* gnu/packages/patches/jamvm-2.0.0-opcode-guard.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add files.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-28 10:45:59 +03:00
Simon South 6c9dca5a9b
gnu: jamvm-1-bootstrap: Add aarch64-linux support.
* gnu/packages/java.scm (jamvm-1-bootstrap)[source]: Add patch; update
name of existing patch.
[arguments]<#:phases>: Invoke autoreconf during bootstrap phase when
building for aarch64.
[native-inputs]: Include packages required for autoreconf when
building for aarch64.
* gnu/packages/patches/jamvm-1.5.1-aarch64-support.patch: New file.
* gnu/packages/patches/jamvm-arm.patch: Rename to
"jamvm-1.5.1-armv7-support.patch".
* gnu/local.mk (dist_patch_DATA): Add file; update filename.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-28 10:45:53 +03:00
Pierre Neidhardt 880939c1a7
gnu: Add drip.
* gnu/packages/java.scm (drip): New variable.
2020-06-26 11:26:18 +02:00
Julien Lepiller a5f8d4e0b3
gnu: Add java-jetbrains-annotations.
* gnu/packages/java.scm (java-jetbrains-annotations): New variable.
2020-07-05 14:12:53 +02:00
Julien Lepiller 52a23d8e48
gnu: Add java-junitparams.
* gnu/packages/java.scm (java-junitparams): New variable.
2020-07-05 14:11:15 +02:00
Efraim Flashner 3e51f9eb3a
gnu: java-bsh: Don't use unstable tarball.
* gnu/packages/java.scm (java-bsh)[source]: Download using git-fetch.
2020-06-29 22:41:28 +03:00
Efraim Flashner 4e257acf48
gnu: java-jcommander: Don't use unstable tarball.
* gnu/packages/java.scm (java-jcommander)[source]: Download using
git-fetch.
2020-06-29 22:41:28 +03:00
Efraim Flashner 87ce1fc596
gnu: java-jboss-javassist: Remove prebuilt jar in snippet.
* gnu/packages/java.scm (java-jboss-javassist)[source]: Add snippet to
remove prebuilt jar.
[arguments]: Remove custom 'remove-binary phase.
2020-06-29 22:41:28 +03:00
Efraim Flashner 8b40878904
gnu: java-jboss-javassist: Don't use unstable tarball.
* gnu/packages/java.scm (java-jboss-javassist)[source]: Download using
git-fetch.
[arguments]: Add custom 'make-files-writable phase.
2020-06-29 22:41:28 +03:00
Efraim Flashner 04ca89d8ad
gnu: java-assertj: Don't use unstable tarball.
* gnu/packages/java.scm (java-asssertj)[source]: Download using
git-fetch.
2020-06-29 22:41:28 +03:00
Efraim Flashner b176f69fba
gnu: java-guice: Don't use unstable tarball.
* gnu/packages/java.scm (java-guice)[source]: Download using git-fetch.
[arguments]: Add custom 'make-files-writable phase.
(java-guice-servlet)[arguments]: Same.
2020-06-29 22:41:27 +03:00
Efraim Flashner dcd62e8b8d
gnu: antlr3-3.3: Don't propagate antlr3-3.1.
* gnu/packages/java.scm (antlr3-3.3)[propagated-inputs]: Remove antlr3-3.1.
2020-06-24 09:37:10 +03:00
Efraim Flashner b5698f5b38
gnu: java-picocli: Use a source file-name.
* gnu/packages/java.scm (java-picocli)[source]: Add a file-name field.
2020-06-23 15:53:54 +03:00
Simon South a212006048
gnu: jamvm: Fix to work with current gcc and glibc.
* gnu/packages/java.scm (jamvm)[source]: Add patch.
(jamvm-1-bootstrap)[native-inputs]: Remove.
* gnu/packages/patches/jamvm-2.0.0-disable-branch-patching.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:55 +02:00
Efraim Flashner 9a01efa262
gnu: Fix apache mirror URIs.
* gnu/packages/web.scm (serf)[source]: Remove redundant part of URI.
* gnu/packages/java.scm (ant-bootstrap, java-commons-httpclient,
java-jakarta-oro)[source]: Same.
* gnu/packages/maven.scm (maven-shared-utils, maven-plugin-annotations,
maven-wagon-provider-api, maven-artifact)[source]: Same.
2020-06-12 18:23:27 +03:00
Efraim Flashner bb0d840b7d
gnu: java-jakarta-oro: Use a mirror URL.
* gnu/packages/java.scm (java-jakarta-oro)[source]: Download using an
apache mirror:// URL.
2020-06-11 11:54:31 +03:00
Efraim Flashner 894d6a085d
gnu: java-commons-httpclient: Use a mirror URL.
* gnu/packages/java.scm (java-commons-httpclient)[source]: Use an apache
mirror:// URL.
2020-06-11 11:53:39 +03:00