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117460 Commits (4a245129ffc84ca9a173da82df6f91239c6b1fe6)

Author SHA1 Message Date
Ricardo Wurmus 72c0125649
gnu: r-fishpond: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.2.
 2023-07-12 14:29:11 +02:00
Ricardo Wurmus 3bfbd6ddd8
gnu: r-bioccheck: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.1.
 2023-07-12 14:29:11 +02:00
Ricardo Wurmus aada7f3a53
gnu: r-universalmotif: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.1.
 2023-07-12 14:29:11 +02:00
Ricardo Wurmus e728562cd3
gnu: r-variancepartition: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.2.
 2023-07-12 14:29:11 +02:00
Ricardo Wurmus c4ea43f75c
gnu: r-variantfiltering: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.1.
 2023-07-12 14:29:11 +02:00
Ricardo Wurmus 8637eba2a5
gnu: r-quasr: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.1.
 2023-07-12 14:29:11 +02:00
Ricardo Wurmus 1d53aa680e
gnu: r-motifbreakr: Update to 2.14.2. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.14.2.
 2023-07-12 14:29:11 +02:00
Ricardo Wurmus a98f8bdcf3
gnu: r-lpsymphony: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.1.
[native-inputs]: Add gfortran.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 0514c45d4a
gnu: r-glmgampoi: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.2.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 75a5504e49
gnu: r-interactionset: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.1.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 6652f72e13
gnu: r-matrixgenerics: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 1b83659902
gnu: r-systempiper: Update to 2.6.3. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 0a0304ef3a
gnu: r-summarizedexperiment: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 464ad1fd79
gnu: r-maaslin2: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1.
[propagated-inputs]: Remove r-lpsymphony; add r-tibble.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 5588562fb9
gnu: r-limma: Update to 3.56.2. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 5db8d3e600
gnu: r-lfa: Update to 2.0.11. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.0.11.
[propagated-inputs]: Add r-rspectra.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 3193a2a04d
gnu: r-genomicfeatures: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.1.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 2b62bc3f67
gnu: r-deseq2: Update to 1.40.2. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.2.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 6604189891
gnu: r-biomart: Update to 2.56.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.1.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 1f0633db11
gnu: r-annotationforge: Update to 1.42.2. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.2.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus c397d6a5e1
gnu: r-genomeinfodb: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.1.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 3c201e1aab
gnu: r-annotationdbi: Update to 1.62.2. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.2.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus 565d84170a
gnu: r-affy: Update to 1.78.1. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.1.
 2023-07-12 14:29:10 +02:00
Ricardo Wurmus a9d140996c
gnu: r-isoformswitchanalyzer: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1.
[propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer, r-s4vectors,
r-saturn, r-summarizedexperiment, r-sva, and r-tidyr.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus b864a5956f
gnu: r-iranges: Update to 2.34.1. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.1.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 5eaf9f6b83
gnu: r-delayedarray: Update to 0.26.6. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.6.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 6e83dee12a
gnu: r-bambu: Update to 3.2.5. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.5.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus f0c82ddced
gnu: r-alevinqc: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.1.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 4db85c197b
gnu: r-ancombc: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.1.
[propagated-inputs]: Remove r-dplyr, r-emmeans, r-magrittr, r-rlang, r-rngtools,
r-tibble, and r-tidyr; add r-gtools, r-matrix, and r-multcomp.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 558637533f
gnu: r-gdsfmt: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.1.
[properties]: Tell updater to leave the extra inputs be.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus b4cafa71ae
gnu: Add r-saturn. 
* gnu/packages/bioconductor.scm (r-saturn): New variable.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 990bac0ea5
gnu: Add r-pfamanalyzer. 
* gnu/packages/bioconductor.scm (r-pfamanalyzer): New variable.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus b10bff65be
gnu: r-mzr: Update to 2.34.1. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.1.
[properties]: Tell updater to not remove the "boost" input.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus ee50cae529
gnu: r-norm: Update to 1.0-11.1. 
* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.1.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus c141725c65
gnu: r-logspline: Update to 2.1.20. 
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.20.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 5a1c16fa18
gnu: r-pbapply: Update to 1.7-2. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.7-2.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 42c29d9d22
gnu: r-robust: Update to 0.7-2. 
* gnu/packages/statistics.scm (r-robust): Update to 0.7-2.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 2108aa1975
gnu: r-rrcov: Update to 1.7-4. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-4.
 2023-07-12 14:29:09 +02:00
Ricardo Wurmus 387c1fafce
gnu: r-robustbase: Update to 0.99-0. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus 86c7032abf
gnu: r-deoptimr: Update to 1.0-14. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-14.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus f9dc378cb4
gnu: r-mvtnorm: Update to 1.2-2. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-2.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus e8ef13993e
gnu: r-rmarkdown: Update to 2.23. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.23.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus 7cb71cb2fb
gnu: r-rcpparmadillo: Update to 0.12.4.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.1.0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus b8112b4600
gnu: r-rstudioapi: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.15.0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus c5c0f85b77
gnu: r-xml2: Update to 1.3.5. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.5.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus 4ec94fe0a9
gnu: r-locfit: Update to 1.5-9.8. 
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.8.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus 1493844a1e
gnu: r-dbplyr: Update to 2.3.3. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.3.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus 6276fbb64a
gnu: r-testthat: Update to 3.1.10. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.10.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus b372435930
gnu: r-matrix: Update to 1.6-0. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-0.
 2023-07-12 14:29:08 +02:00
Ricardo Wurmus f072cd9486
gnu: r-kernsmooth: Update to 2.23-22. 
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-22.
 2023-07-12 14:29:08 +02:00