1f94ba9408
gnu: java-picard: Delete failing build phase.
...
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
2018-06-05 11:26:08 +02:00
1ed386fc26
gnu: java-cisd-jhdf5: Delete failing build phase.
...
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Delete build phase
"generate-jar-indices".
2018-06-05 11:17:03 +02:00
a993ad833e
gnu: java-picard-1.113: Delete failing build phase.
...
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete
"generate-jar-indices" build phase.
2018-06-05 11:15:21 +02:00
e847f402c1
gnu: java-picard-2.10.3: Delete failing build phase.
...
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
2018-06-05 11:14:38 +02:00
d7e6fb6d7e
Merge branch 'master' into core-updates
2018-06-05 11:09:39 +02:00
71c495c941
gnu: r-rtracklayer: Update to 1.40.3.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
2018-06-05 10:40:42 +02:00
fb8c17baef
gnu: r-ranger: Update to 0.10.1.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.1.
2018-06-05 10:40:42 +02:00
c9a879ed54
gnu: r-np: Update to 0.60-8.
...
* gnu/packages/cran.scm (r-np): Update to 0.60-8.
2018-06-05 10:40:42 +02:00
83d5c2e106
gnu: t-series: Update to 0.10-45.
...
* gnu/packages/cran.scm (t-series): Update to 0.10-45.
2018-06-05 10:40:42 +02:00
c152c6b361
gnu: r-ksamples: Update to 1.2-8.
...
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-8.
2018-06-05 10:40:42 +02:00
d19e0690b9
gnu: r-methylkit: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
2018-06-05 10:40:42 +02:00
0da6afa286
gnu: r-bamsignals: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
2018-06-05 10:40:42 +02:00
66ece08d05
Merge branch 'master' into core-updates
2018-06-05 09:59:27 +02:00
4bf0a1f8d1
gnu: p11-kit: Update to 0.23.12.
...
* gnu/packages/tls.scm (p11-kit): Update to 0.23.12.
2018-06-05 03:19:48 +02:00
8b71684a20
gnu: elfutils: Disable test suite on MIPS.
...
* gnu/packages/elf.scm (elfutils)[arguments]: Add (#:tests? #f) on MIPS.
2018-06-04 21:19:35 -04:00
46fce96881
gnu: beets: Return #t from phases.
...
* gnu/packages/music.scm (beets)[arguments]: Substitute INVOKE for
SYSTEM* and return #t from all phases.
2018-06-05 03:19:26 +02:00
123f86d898
gnu: nano: Update to 2.9.8.
...
* gnu/packages/nano.scm (nano): Update to 2.9.8.
2018-06-05 03:18:46 +02:00
0d35a95417
gnu: python-pycurl: Update to 7.43.0.2.
...
* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.2.
2018-06-05 03:18:46 +02:00
4682d48363
gnu: fvwm: Update to 2.6.8.
...
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.8.
2018-06-05 03:01:17 +02:00
f7b53e6855
gnu: perl-parse-yapp: Update to 1.21.
...
* gnu/packages/perl.scm (perl-parse-yapp): Update to 1.21.
2018-06-05 03:01:17 +02:00
b5dfccd7b6
gnu: perl-text-balanced: Update to 2.03.
...
* gnu/packages/perl.scm (perl-text-balanced): Update to 2.03.
[source]: Update URI.
2018-06-05 03:01:16 +02:00
971b8381ff
gnu: perl-posix-strftime-compiler: Update to 0.42.
...
* gnu/packages/perl.scm (perl-posix-strftime-compiler): Update to
0.42.
2018-06-05 03:01:07 +02:00
27f89be5c9
gnu: perl-moosex-methodattributes: Update to 0.31.
...
* gnu/packages/perl.scm (perl-moosex-methodattributes): Update to
0.31.
2018-06-05 03:00:58 +02:00
91cb6eaf52
gnu: perl-module-install: Update to 1.19.
...
* gnu/packages/perl.scm (perl-module-install): Update to 1.19.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
ed2e354b79
gnu: perl-memoize-expirelru: Update to 0.56.
...
* gnu/packages/perl.scm (perl-memoize-expirelru): Update to 0.56.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
01c6607af9
gnu: ccid, pcsc-lite: Move away from alioth.debian.org.
...
* gnu/packages/security-token.scm (ccid, pcsc-lite)[source, home-page]:
Update upstream URI.
2018-06-04 18:27:59 +02:00
19b662ea7c
gnu: ranger: Enable image support.
...
* gnu/packages/disk.scm (ranger)[inputs]: Add 'w3m'.
[arguments]: Add wrapper for W3MIMGDISPLAY_PATH environment variable.
2018-06-04 16:35:03 +02:00
fd17434249
gnu: lz4: Use HTTPS home page.
...
* gnu/packages/compression.scm (lz4)[home-page]: Use HTTPS.
2018-06-04 15:35:48 +02:00
b6315bc0d2
gnu: thermald: Update to 1.7.2.
...
* gnu/packages/admin.scm (thermald): Update to 1.7.2.
[arguments]: Remove Upstart kluge as promised.
2018-06-04 15:35:47 +02:00
49d85a19fb
gnu: pdfgrep: Update to 2.1.1.
...
* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.1.
2018-06-04 15:35:47 +02:00
e1345dec67
gnu: lxqt-build-tools: Update to 0.5.0.
...
* gnu/packages/lxqt.scm (lxqt-build-tools): Update to 0.5.0.
2018-06-04 15:35:47 +02:00
12eadf5649
gnu: perl-libintl-perl: Update to 1.29.
...
* gnu/packages/perl.scm (perl-libintl-perl): Update to 1.29.
2018-06-04 15:35:47 +02:00
a0b9612fc9
gnu: perl-hash-multivalue: Update to 0.16.
...
* gnu/packages/perl.scm (perl-hash-multivalue): Update to 0.16.
[source]: Update URI.
2018-06-04 15:35:46 +02:00
92299d669a
gnu: perl-file-pushd: Update to 1.016.
...
* gnu/packages/perl.scm (perl-file-pushd): Update to 1.016.
2018-06-04 15:35:46 +02:00
cf25329661
gnu: perl-exception-class: Update to 1.44.
...
* gnu/packages/perl.scm (perl-exception-class): Update to 1.44.
2018-06-04 15:35:46 +02:00
4f6c01e78a
gnu: perl-datetime-timezone: Update to 2.19.
...
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.19.
2018-06-04 15:35:46 +02:00
a1b16662bc
gnu: perl-test-without-module: Update to 0.20.
...
* gnu/packages/perl-check.scm (perl-test-without-module): Update to 0.20.
2018-06-04 15:35:45 +02:00
e40ab7382e
gnu: perl-datetime: Update to 1.49.
...
* gnu/packages/perl.scm (perl-datetime): Update to 1.49.
2018-06-04 15:35:45 +02:00
854cf20647
gnu: perl-context-preserve: Update to 0.03.
...
* gnu/packages/perl.scm (perl-context-preserve): Update to 0.03.
2018-06-04 15:35:45 +02:00
30c070d1ae
gnu: perl-class-load-xs: Update to 0.10.
...
* gnu/packages/perl.scm (perl-class-load-xs): Update to 0.10.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
Add perl-test-without-module.
2018-06-04 15:35:45 +02:00
d2fe431870
gnu: perl-class-load: Update to 0.24.
...
* gnu/packages/perl.scm (perl-class-load): Update to 0.24.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
Add perl-test-without-module.
2018-06-04 15:35:44 +02:00
d017dfaaf3
gnu: sent: Say ‘plain text’.
...
‘Plaintext’ is a crypto term. ‘Slideshow’ is apparently acceptable.
* gnu/packages/suckless.scm (sent)[synopsis, description]: Add spaces.
2018-06-04 15:35:44 +02:00
4ae9274ae9
gnu: snd: Version documentation directory.
...
* gnu/packages/audio.scm (snd)[arguments]: Install documentation to the
conventional location. Remove redundant MKDIR-P. Align cosmetically.
2018-06-04 15:35:44 +02:00
84979374c2
gnu: acpica: Update to 20180531.
...
* gnu/packages/admin.scm (acpica): Update to 20180531.
2018-06-04 15:35:44 +02:00
a052d5ab0d
gnu: isync: Add SASL support.
...
This adds ~5.5 MiB (7.5%) to isync's now-78.6 MiB closure.
* gnu/packages/mail.scm (isync)[inputs]: Add CYRUS-SASL.
2018-06-04 15:35:43 +02:00
7394e264fc
gnu: perf: Work around GCC bug.
...
Works around <https://bugs.gnu.org/31708 >.
* gnu/packages/patches/perf-gcc-ice.patch: New patch.
* gnu/packages/linux.scm (perf)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-04 14:03:54 +02:00
831f07a009
gnu: signing-party: Update to commit d6f2296.
...
* gnu/packages/gnupg.scm (signing-party): Update to commit d6f2296.
[home-page]: Change to salsa.debian.org.
[source]: Use git-fetch.
[arguments]: Remove 'change-directory' phase. In 'configure' phase,
modify 'gpgwrap/Makefile' instead of 'gpgwrap/src/Makefile'.
2018-06-04 14:03:54 +02:00
32da38d572
Merge branch 'master' into core-updates
2018-06-04 11:25:48 +02:00
c0e7a52996
gnu: python-pyqt: Update to 5.10.1.
...
* gnu/packages/qt.scm (python-pyqt): Update to 5.10.1.
[inputs]: Remove qtwebkit.
[arguments]: Add custom phase to fix compilation with Qt 5.11.
2018-06-04 11:06:00 +03:00
9cdd868450
gnu: python-sip: Update to 4.19.8.
...
* gnu/packages/qt.scm (python-sip): Update to 4.19.8.
2018-06-04 11:05:57 +03:00
d53e5b366d
gnu: gcompris-qt: Update to 0.91.
...
* gnu/packages/education.scm (gcompris-qt): Update to 0.91.
[arguments]: Add custom phase to fix building with Qt 5.11.
2018-06-03 19:11:27 +03:00
68ddfb2e8d
gnu: quassel: Fix building with Qt 5.11.
...
* gnu/packages/irc.scm (quassel)[sources]: Add patch. Return #t from
snippet.
* gnu/packages/patches/quassel-qt-5.11.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-06-03 15:49:50 +03:00
4edc431b0f
gnu: w3m: Enable image support.
...
* gnu/packages/w3m.scm (w3m)[inputs]: Add gdk-pixbuf, libx11.
2018-06-03 13:01:41 +02:00
6f5c67d725
gnu: keepassxc: Fix compilation with Qt 5.11.
...
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add custom
'patch-sources phase to include missing headers.
2018-06-03 12:46:11 +03:00
0c0431f9ce
Merge branch 'master' into core-updates
2018-06-03 03:36:47 -04:00
2c790226d2
gnu: rust: Fix build for armhf and mips64el.
...
This is a followup to commit 514026d7de
2018-06-03 03:36:13 -04:00
0ec430f795
gnu: xxd: Remove all inherited inputs.
...
* gnu/packages/vim.scm (xxd)[inputs]: New field, don't inherit from vim.
2018-06-02 23:34:56 +03:00
aa75dadab8
gnu: vim: Update to 8.1.0026.
...
* gnu/packages/vim.scm (vim): Update to 8.1.0026.
[arguments]: Update substitute list on custom 'patch-config-files phase.
[inputs]: Remove inetutils.
2018-06-02 23:34:37 +03:00
2d4fdb707e
gnu: xxd: Return true from all phases.
...
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir
phase.
2018-06-02 22:34:23 +03:00
15dcd292df
gnu: Add emacs-fish-completion.
...
* gnu/packages/emacs.scm (emacs-fish-completion): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:52 +02:00
e374010923
gnu: Add emacs-evil-org.
...
* gnu/packages/emacs.scm (emacs-evil-org): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
ac85107c9f
gnu: Add emacs-evil-multiedit.
...
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
e1e09bcb43
gnu: Add emacs-evil-mu4e.
...
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
c6c1f0bf41
gnu: Add emacs-evil-magit.
...
* gnu/packages/emacs.scm (emacs-evil-magit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
22deb03439
gnu: Add emacs-evil-ediff.
...
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
f52ef55e2b
gnu: guile-json: Update to 1.0.1.
...
* gnu/packages/guile.scm (guile-json): Update to 1.0.1.
[source]: Switch to github.com. Adjust 'snippet' to modify
'configure.ac' and 'Makefile.am'.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
2018-06-02 15:29:38 +02:00
e0f8970357
Merge branch 'master' into core-updates
2018-06-02 13:44:43 +02:00
92963798a6
gnu: r-scater: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.
2018-06-02 13:42:05 +02:00
83402242ea
gnu: r-mvtnorm: Update to 1.0-8.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
2018-06-02 13:39:13 +02:00
7799a01ef1
gnu: r-rgraphviz: Update to 2.24.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
2018-06-02 13:39:13 +02:00
d7e3299987
gnu: r-scran: Update to 1.8.2.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02 13:39:13 +02:00
8ec56b2956
gnu: r-delayedmatrixstats: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
d99e0938fa
gnu: r-singlecellexperiment: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
fd613234b7
gnu: r-beachmat: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.
2018-06-02 13:39:12 +02:00
e9c417361e
gnu: r-rhdf5lib: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
2018-06-02 13:39:12 +02:00
0840352835
gnu: r-hdf5array: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02 13:39:12 +02:00
5cd725d002
gnu: r-qvalue: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
c6c619c179
gnu: r-hitc: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
4dedecbe70
gnu: r-fithic: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02 13:39:12 +02:00
8db6256f4b
gnu: r-sushi: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02 13:39:12 +02:00
2d3c172b72
gnu: r-gwascat: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
fecbbac286
gnu: r-gviz: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
6929b97583
gnu: r-gqtlstats: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02 13:39:12 +02:00
45c29a6e5c
gnu: r-ldblock: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
2018-06-02 13:39:12 +02:00
9b0b108ed9
gnu: r-erma: Update to 0.12.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
2018-06-02 13:39:12 +02:00
d26f95d079
gnu: r-snpstats: Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02 13:39:12 +02:00
dcd1f0236c
gnu: r-gqtlbase: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02 13:39:12 +02:00
e214a6e6ff
gnu: r-ggbio: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
34cc18d4de
gnu: r-biovizbase: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
94ae875c0a
gnu: r-organismdbi: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
bbcd19fb4d
gnu: r-ensembldb: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.
2018-06-02 13:39:11 +02:00
19adb89854
gnu: r-dirichletmultinomial: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
d3fb2ad834
gnu: r-complexheatmap: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
d1463f1b0c
gnu: r-genomicfiles: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
2018-06-02 13:39:11 +02:00
1ba126e0e4
gnu: r-gage: Update to 2.30.0.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
2018-06-02 13:39:11 +02:00
419e438d52
gnu: r-keggrest: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
2018-06-02 13:39:11 +02:00
15cc1a6867
gnu: r-fastseg: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
2018-06-02 13:39:11 +02:00
646439c7e3
gnu: r-annotationhub: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
2018-06-02 13:39:11 +02:00
420415b057
gnu: r-interactivedisplaybase: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
a67dd4c5e9
gnu: r-edaseq: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
2018-06-02 13:39:11 +02:00
749b712677
gnu: r-deseq: Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
2018-06-02 13:39:11 +02:00
0ebd7a4c9f
gnu: r-aroma-light: Update to 3.10.0.
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
2018-06-02 13:39:11 +02:00
bdc8b40af2
gnu: r-msnid: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
2018-06-02 13:39:10 +02:00
250d78eac9
gnu: r-msnbase: Update to 2.6.1.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1.
[propagated-inputs]: Add r-mass and r-scales.
2018-06-02 13:39:10 +02:00
0f773b90db
gnu: r-pcamethods: Update to 1.72.0.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.72.0.
2018-06-02 13:39:10 +02:00
7bd2582971
gnu: r-mzid: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.18.0.
2018-06-02 13:39:10 +02:00
af8710624d
gnu: r-vsn: Update to 3.48.1.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.48.1.
2018-06-02 13:39:10 +02:00
5837f1835b
gnu: r-affy: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.58.0.
[inputs]: Add zlib.
2018-06-02 13:39:10 +02:00
82589f7430
gnu: r-affyio: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.50.0.
2018-06-02 13:39:10 +02:00
39cc491790
gnu: r-mzr: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.14.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2018-06-02 13:39:10 +02:00
a02b82088f
gnu: r-protgenerics: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.12.0.
2018-06-02 13:39:10 +02:00
9547dd8613
gnu: r-sva: Update to 3.28.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.28.0.
2018-06-02 13:39:10 +02:00
19ad568e79
gnu: r-methylkit: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.0.
2018-06-02 13:39:10 +02:00
aae4f716da
gnu: r-copywriter: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.12.0.
2018-06-02 13:39:10 +02:00
8f94487da7
gnu: r-chipseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.30.0.
2018-06-02 13:39:10 +02:00
62509bbc81
gnu: r-annotationfilter: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.4.0.
2018-06-02 13:39:10 +02:00
d73c5728f3
gnu: r-rhdf5: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
2018-06-02 13:39:10 +02:00
c76e8baf9e
gnu: r-tximport: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.
2018-06-02 13:39:10 +02:00
b6c2c8f781
gnu: r-mutationalpatterns: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.
2018-06-02 13:39:09 +02:00
72f11ff9c5
gnu: r-bamsignals: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
1a08bb8a17
gnu: r-rhtslib: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.
2018-06-02 13:39:09 +02:00
2c480bb012
gnu: r-zlibbioc: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.
2018-06-02 13:39:09 +02:00
7e6537e257
gnu: r-motifrg: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.
2018-06-02 13:39:09 +02:00
8217c2d0bc
gnu: r-seqlogo: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.
2018-06-02 13:39:09 +02:00
17d35de73f
gnu: r-genomation: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
5229cedf57
gnu: r-seqpattern: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
25d1df5764
gnu: r-impute: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.54.0.
2018-06-02 13:39:09 +02:00
89ef133ebd
gnu: r-bsgenome: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.48.0.
2018-06-02 13:39:09 +02:00
f2eb2e453e
gnu: r-topgo: Update to 2.32.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.32.0.
2018-06-02 13:39:09 +02:00
2f66fecd89
gnu: r-graph: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.58.0.
2018-06-02 13:39:09 +02:00
b4ad4ec6b4
gnu: r-genomicfeatures: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.0.
[propagated-inputs]: Remove r-rmysql.
2018-06-02 13:39:09 +02:00
a30df29768
gnu: r-rtracklayer: Update to 1.40.2.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.2.
[native-inputs]: Add pkg-config.
2018-06-02 13:39:09 +02:00
90102bd06b
gnu: r-genomicalignments: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
2018-06-02 13:39:09 +02:00
9bf4110ea1
gnu: r-summarizedexperiment: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
2018-06-02 13:39:08 +02:00
82f593f378
gnu: r-delayedarray: Update to 0.6.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:08 +02:00
d2367a89dd
gnu: r-rsamtools: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
2018-06-02 13:39:08 +02:00
942655add1
gnu: r-biostrings: Update to 2.48.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
2018-06-02 13:39:08 +02:00
e6eac58d4c
gnu: r-biocparallel: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
2018-06-02 13:39:08 +02:00
1763cba80e
gnu: r-biomart: Update to 2.36.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
2018-06-02 13:39:08 +02:00
77f66feee7
gnu: r-annotationdbi: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
2018-06-02 13:39:08 +02:00
6fd71f1b6a
gnu: r-biobase: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
2018-06-02 13:39:08 +02:00
e51afc63b7
gnu: r-genomicranges: Update to 1.32.3.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
2018-06-02 13:39:08 +02:00
c2401d06c5
gnu: r-xvector: Update to 0.20.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
2018-06-02 13:39:08 +02:00
0a465e5694
gnu: r-limma: Update to 3.36.1.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
2018-06-02 13:39:08 +02:00
d358a5a0c1
gnu: r-variantannotation: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
2018-06-02 13:39:08 +02:00
4639025284
gnu: r-edger: Update to 3.22.2.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
2018-06-02 13:39:08 +02:00
953c8b18f8
gnu: r-genomeinfodb: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
2018-06-02 13:39:08 +02:00
8b44c28f5d
gnu: r-iranges: Update to 2.14.10.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
2018-06-02 13:39:08 +02:00
33cd15fa84
gnu: r-s4vectors: Update to 0.18.2.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
2018-06-02 13:39:08 +02:00
607acf3194
gnu: r-dnacopy: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
2018-06-02 13:39:07 +02:00
3679a2fec4
gnu: r-bioccheck: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
2018-06-02 13:39:07 +02:00
dc6c168ac1
gnu: r-biocstyle: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
2018-06-02 13:39:07 +02:00
e5f52b692a
gnu: r-biocviews: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
2018-06-02 13:39:07 +02:00
97af51ef40
gnu: r-biocinstaller: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
2018-06-02 13:39:07 +02:00
e5907a44e1
gnu: r-biocgenerics: Update to 0.26.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
2018-06-02 13:39:07 +02:00
9370b8ee9f
gnu: r-grohmm: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
712fe39680
gnu: r-systempiper: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
eabe78faca
gnu: r-shortread: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
2018-06-02 13:39:07 +02:00
9da8e275ca
gnu: r-gostats: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
d8410d6610
gnu: r-category: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
f1094f50a7
gnu: r-gseabase: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
2018-06-02 13:39:07 +02:00
9177ac2295
gnu: r-rbgl: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
2018-06-02 13:39:07 +02:00
5516db9e70
gnu: r-annotationforge: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
2018-06-02 13:39:07 +02:00
16da69b5e6
gnu: r-dexseq: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
2018-06-02 13:39:07 +02:00
51c1f96ebc
gnu: r-deseq2: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
2018-06-02 13:39:07 +02:00
41657b15f4
gnu: r-genefilter: Update to 1.62.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
2018-06-02 13:39:06 +02:00
4d70c8c486
gnu: r-geneplotter: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
14e9235f0c
gnu: r-copynumber: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
02be818044
gnu: r-annotate: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
81b0181b6f
gnu: r-qdnaseq: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:06 +02:00
5c0df206cf
gnu: r-cghcall: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
2018-06-02 13:39:06 +02:00
205df4a4cb
gnu: r-cghbase: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
2018-06-02 13:39:06 +02:00
6748708883
gnu: r-marray: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0.
[propagated-inputs]: Remove r-biobase.
2018-06-02 13:39:06 +02:00
f794e85daa
gnu: r-chippeakanno: Update to 3.14.0.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0.
[propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges,
r-iranges, and r-s4vectors.
2018-06-02 13:39:06 +02:00
43734b4727
gnu: r-ripseeker: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
45bbccf4e7
gnu: r-diffbind: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
2018-06-02 13:39:06 +02:00
72427c721d
gnu: r-regioner: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
2018-06-02 13:39:06 +02:00
2f5b3d8e90
gnu: r-hpar: Update to 1.22.2.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
2018-06-02 13:39:06 +02:00
d22546cf80
gnu: r-minimal: Update to 3.5.0.
...
* gnu/packages/statistics.scm (r-with-tests): New variable derived from
r-minimal; update to 3.5.0.
[arguments]: Build recommended packages.
(r-minimal): Inherit from r-with-tests.
[arguments]: Disable recommended packages and tests.
2018-06-02 13:39:06 +02:00
d5452aa201
gnu: emacs-elfeed: Update to 3.0.0.
...
* gnu/packages/emacs.scm (emacs-elfeed): Update to 3.0.0.
2018-06-02 13:05:08 +02:00
a13c1bf4ca
Merge branch 'master' into core-updates
2018-06-01 23:41:40 +02:00
1a3e3162ac
gnu: icecat: Add more fixes from upstream esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-06-01 12:51:43 -04:00
65a9f6b6cf
gnu: qtbase: Fix build on older kernels.
...
* gnu/packages/qt.scm (qtbase)[arguments]: Add configure flags
"-no-feature-getentropy" and "-no-feature-renameat2".
2018-06-01 17:33:25 +02:00
9f160a0d3c
vm: Use 'with-extensions'.
...
* gnu/system/vm.scm (system-docker-image)[build]: Use
'with-extensions'. Remove 'add-to-load-path' calls.
2018-06-01 15:21:28 +02:00
33d8a87104
bootloader: grub: Use 'with-extensions'.
...
* gnu/bootloader/grub.scm (svg->png): Use 'with-extensions'. Remove
'add-to-load-path' calls.
* gnu/build/svg.scm: Use (rsvg) and (cairo) the normal way. Remove
'module-autoload!' calls.
2018-06-01 15:21:28 +02:00
31a5d694a3
bootloader: grub: Simplify 'svg->png'.
...
* gnu/bootloader/grub.scm (svg->png): Remove now unneeded
#:guile-for-build argument.
2018-06-01 15:21:28 +02:00
ff913cf514
tests: ssh: Use 'with-extensions'.
...
* gnu/tests/ssh.scm (run-ssh-test)[test]: Wrap body in
'with-extensions'. Remove %load-path manipulation code.
2018-06-01 15:21:28 +02:00
514026d7de
gnu: rust: Add support for building 32-bit packages on 64-bit hosts.
...
* gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use
nix-system->gnu-triplet to determine the system type.
(rust-1.19): Use readelf instead of nm in the atomic-lock-free test.
(rust-1.23): Disable the cargo_test_env test. Disable parallel execution of
tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
a078a6ec3b
gnu: Add git-annex.
...
* gnu/packages/version-control.scm (git-annex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
4e5d9bf20e
gnu: Add ghc-disk-free-space.
...
* gnu/packages/haskell.scm (ghc-disk-free-space): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
1ea3971992
gnu: ghc-psqueues: Allow building with newer versions of QuickCheck.
...
* gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure
flag to allow newer versions of QuickCheck.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
6950a45073
gnu: Add ghc-safesemaphore.
...
* gnu/packages/haskell.scm (ghc-safesemaphore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
92c2097bc2
gnu: Add ghc-esqueleto.
...
* gnu/packages/haskell.scm (ghc-esqueleto): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
a39e6faee9
gnu: Add ghc-ifelse.
...
* gnu/packages/haskell.scm (ghc-ifelse): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
e3aae496f9
gnu: Add ghc-feed.
...
* gnu/packages/haskell.scm (ghc-feed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
4c798726b4
gnu: Add ghc-bloomfilter.
...
* gnu/package/haskell.scm (ghc-bloomfilter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
93b83eb31e
services: Add hpcguix-web.
...
* gnu/service/web.scm (<hpcguix-web-configuration>): New record-type.
(%hpcguix-web-accounts): New variable.
(%hpcguix-web-activation,hpcguix-web-shepherd-service,
hpcguix-web-service-type): New procedures.
* gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure.
(%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable.
* doc/guix.texi (Web Services): Add 'hpcguix-web'.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
d6a4dfec90
gnu: Add hpcguix-web.
...
* gnu/package/web.scm (hpcguix-web): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-06-01 13:50:26 +02:00
7a4e2eaab3
marionette: Add 'wait-for-tcp-port'.
...
* gnu/build/marionette.scm (wait-for-tcp-port): New procedure.
* gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead
of the inline loop.
2018-06-01 13:50:26 +02:00
5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26.
...
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase. In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable. Remove substitution for
'w3m-image-viewer', which no longer exists.
2018-06-01 13:50:26 +02:00
8674abb1dd
gnu: sddm: Fix CMake build.
...
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.
Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-06-01 12:17:00 +02:00
e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].
...
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
2018-05-31 20:31:46 -04:00
555ab0853b
gnu: Add emacs-zotxt.
...
* gnu/packages/emacs.scm (emacs-zotxt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:09 +02:00
45dca193a4
gnu: Add emacs-org-caldav.
...
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
ec8a9892d1
gnu: Add python-bigfloat.
...
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
73d854232f
gnu: bear: Fix python path.
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* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
b1059b38b2
system: 'read-boot-parameters' provides a more meaningful warning.
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'system' here was bound to Guile's 'system' procedure.
* gnu/system.scm (read-boot-parameters): Fix argument for fallback
warning.
2018-05-31 18:13:08 +02:00
69a05eab35
file-systems: Always wait for devices to show up.
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Previously, 'canonicalize-device-spec' would wait for devices when they
were specified as a label or UUID, but would not wait when the user
passed a "/dev" file name directly. This could cause problems when
the /dev node takes a while to show up.
* gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve'
call in the 'string?' case.
2018-05-31 18:13:08 +02:00
59f87b44da
Merge branch 'master' into core-updates
2018-05-31 13:23:49 +02:00
404e5c7d7d
gnu: r-servr: Update to 0.10.
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* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
2018-05-31 13:21:31 +02:00
ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31 13:21:31 +02:00
508dd24abe
gnu: r-shiny: Update to 1.1.0.
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* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
2018-05-31 13:21:31 +02:00
eb0d599a67
gnu: r-rjson: Update to 0.2.19.
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* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
2018-05-31 13:21:31 +02:00
71644c0ee8
gnu: r-htmltable: Update to 1.12.
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* gnu/packages/web.scm (r-htmltable): Update to 1.12.
2018-05-31 13:21:31 +02:00
beb0878fe5
gnu: r-directlabels: Update to 2018.05.22.
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* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
2018-05-31 13:21:31 +02:00
089e037638
gnu: r-ranger: Update to 0.10.0.
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* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
2018-05-31 13:21:31 +02:00
14bb6f5f83
gnu: r-tclust: Update to 1.4-1.
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* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
2018-05-31 13:21:31 +02:00
9fad62743c
gnu: r-caret: Update to 6.0-80.
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* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
2018-05-31 13:21:31 +02:00
9bcc68fbf6
gnu: r-quantreg: Update to 5.36.
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* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
2018-05-31 13:21:31 +02:00
13dc492435
gnu: r-rrcov: Update to 1.4-4.
...
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
2018-05-31 13:21:31 +02:00
6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
2018-05-31 13:21:31 +02:00
366dd8d7cb
gnu: r-runit: Update to 0.4.32.
...
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
2018-05-31 13:21:31 +02:00
edb29f2986
gnu: r-purrr: Update to 0.2.5.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
2018-05-31 13:21:31 +02:00
e94d827440
gnu: r-tidyr: Update to 0.8.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
2018-05-31 13:21:31 +02:00
1957c20e0c
gnu: r-synchronicity: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
2018-05-31 13:21:31 +02:00
7da0790e2a
gnu: r-rngtools: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
2018-05-31 13:21:31 +02:00
3a6051659d
gnu: r-pkgmaker: Update to 0.27.
...
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
2018-05-31 13:21:31 +02:00
b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
a52bb97a79
gnu: r-plotrix: Update to 3.7-2.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
2018-05-31 13:21:31 +02:00
1ce6be5ee2
gnu: r-data-table: Update to 1.11.4.
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* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
2018-05-31 13:21:31 +02:00
2d7758c1d6
gnu: r-rlang: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
2018-05-31 13:21:31 +02:00
624283a107
gnu: r-knitrbootstrap: Update to 1.0.2.
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* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
2018-05-31 13:21:31 +02:00
22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10.
...
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
2018-05-31 13:21:31 +02:00
99b225f3eb
gnu: r-bit: Update to 1.1-14.
...
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
2018-05-31 13:21:31 +02:00
3c441be0f3
gnu: r-kernlab: Update to 0.9-26.
...
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31 13:21:31 +02:00
ad016826c9
gnu: r-rmysql: Update to 0.10.15.
...
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
aea3be250c
gnu: r-mice: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31 13:21:31 +02:00
6034a62a1b
gnu: r-callr: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
2018-05-31 13:21:31 +02:00
a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0.
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* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
2018-05-31 13:21:31 +02:00
e86d3cc501
gnu: r-shinyace: Update to 0.3.1.
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* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
2018-05-31 13:21:31 +02:00
a80606308a
gnu: r-processx: Update to 3.1.0.
...
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31 13:21:31 +02:00
9944399ae3
gnu: r-ggally: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
2018-05-31 13:21:31 +02:00
13079c143b
gnu: r-psych: Update to 1.8.4.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31 13:21:31 +02:00
aadb9ee6df
gnu: r-pillar: Update to 1.2.3.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
65ea783f6c
gnu: r-utf8: Update to 1.1.4.
...
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
2018-05-31 13:21:31 +02:00
c36745cf95
gnu: r-ggjoy: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
2018-05-31 13:21:31 +02:00
cda93e8399
gnu: r-dtw: Update to 1.20-1.
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* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
2018-05-31 13:21:31 +02:00
fabf09934b
gnu: r-ica: Update to 1.0-2.
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* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
2018-05-31 13:21:31 +02:00
1e31e8bc74
gnu: r-sm: Update to 2.2-5.5.
...
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
2018-05-31 13:21:31 +02:00
da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1.
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* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
Tobias Geerinckx-Rice
Mark H Weaver
Rutger Helling
Ludovic Courtès
Efraim Flashner
Pierre Neidhardt
Ricardo Wurmus
Clément Lassieur
Robin Templeton
Timothy Sample
Rouby Pierre-Antoine
Stefan Stefanović
Leo Famulari
Konrad Hinsen
Fis Trivial