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696 Commits (506cbeabaa1e468370521ca5ba7a69666a5d4a32)

Author SHA1 Message Date
Ricardo Wurmus 506cbeabaa
gnu: r-bacon: Add missing input.
* gnu/packages/bioconductor.scm (r-bacon)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus faaf2b3571
gnu: r-bioassayr: Add missing input.
* gnu/packages/bioconductor.scm (r-bioassayr)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 229736aa52
gnu: r-activepathways: Add missing input.
* gnu/packages/bioconductor.scm (r-activepathways)[native-inputs]:
Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 5ef2b749b5
gnu: r-dose: Add missing input.
* gnu/packages/bioconductor.scm (r-dose)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus f4be4995d6
gnu: r-a4base: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus 851081bf34
gnu: r-varianttools: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus 64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
2020-04-14 16:41:00 +02:00
Vagrant Cascadian e40ecf8a2c
gnu: r-wavcluster: Fix grammar of "allows to integrate" to "integrates".
* gnu/packages/bioconductor (r-wavcluster): Fix grammar.
2020-04-12 14:59:45 -07:00
Vagrant Cascadian 8c4bf6c29c
gnu: r-aucell: Fix grammar of "allows to identify" to "identifies".
* gnu/packages/bioconductor (r-aucell): Fix grammar.
2020-04-12 14:59:43 -07:00
Vagrant Cascadian 23c8ef7124
gnu: r-fgsea: Various grammar and spelling fixes.
* gnu/packages/bioconductor (r-fgsea): Fix spelling of "standard".
  Fix grammar of "allows to make" to "makes".
2020-04-12 14:43:52 -07:00
Ricardo Wurmus 4ecba23091
gnu: r-biocworkflowtools: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.12.1.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:27 +02:00
Ricardo Wurmus 9669bc170a
gnu: r-mixomics: Update to 6.10.9.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.9.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:27 +02:00
Ricardo Wurmus d49e3f0190
gnu: r-cytoml: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-cytoml): Update to  1.12.1.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:26 +02:00
Ricardo Wurmus 028fd6f786
gnu: r-gofuncr: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.1.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:26 +02:00
Ricardo Wurmus 81a37891ec
gnu: r-genomicinteractions: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.2.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:26 +02:00
Ricardo Wurmus 2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 51d1a7a2ef
gnu: r-mast: Add r-knitr to native inputs.
* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
2020-03-25 09:40:05 +01:00
Ricardo Wurmus 5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 1f2f01aed5
gnu: r-bigpint: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 4bcb38c801
gnu: r-biosigner: Update to 1.14.4.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus d5951dc43a
gnu: r-gosemsim: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 2d6a7bca9e
gnu: r-biocpkgtools: Update to 1.4.6.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.4.6.
[propagated-inputs]: Add r-biocfilecache, r-rappdirs, r-rlang, and
r-tidyselect.
[native-inputs]: Add r-knitr.
2020-03-19 10:06:27 +01:00
Ricardo Wurmus f7100edaf6
gnu: r-biosigner: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.2.
[native-inputs]: Remove r-rmarkdown, pandoc, and pandoc-citeproc.
2020-03-19 10:06:27 +01:00
Tobias Geerinckx-Rice 486a080048
gnu: r-htqpcr: Update home page.
* gnu/packages/bioconductor.scm (r-htqpcr)[home-page]: Use HTTPS link
to PDF paper.
2020-03-17 23:09:24 +01:00
Ricardo Wurmus 6bd6097ed5
gnu: r-cicero: Update to 1.4.4.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0754fefb75
gnu: r-ggcyto: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:02 +01:00
Ricardo Wurmus e0061f5125
gnu: r-mlinterfaces: Update to 1.66.5.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
2020-03-12 15:15:02 +01:00
Ricardo Wurmus dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
2020-03-08 16:02:04 +01:00
Ricardo Wurmus 67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
2020-03-07 19:31:47 +01:00
Ricardo Wurmus bf3722f9db
gnu: r-depecher: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-07 19:31:47 +01:00
Ricardo Wurmus a2512e436b
gnu: r-xcms: Update to 3.8.2.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
2020-03-07 19:31:47 +01:00
Ricardo Wurmus f0aaa4482a
gnu: r-yamss: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
2020-03-07 19:31:47 +01:00
Tobias Geerinckx-Rice b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
2020-03-02 21:46:27 +01:00
Ricardo Wurmus 5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
2020-03-01 23:38:33 +01:00
Ricardo Wurmus e766ba9a52
gnu: r-cicero: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
2020-03-01 23:38:26 +01:00
Ricardo Wurmus 0a30342def
gnu: r-mlinterfaces: Update to 1.66.4.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
2020-03-01 23:38:19 +01:00
Ricardo Wurmus aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
2020-03-01 23:38:12 +01:00
Ricardo Wurmus 8351faae8a
gnu: r-chippeakanno: Update to 3.20.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
2020-03-01 23:38:06 +01:00
Ricardo Wurmus 975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0.
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
2020-03-01 23:21:15 +01:00
Mădălin Ionel Patrașcu c51c0033d0
gnu: Add r-bsgenome-hsapiens-ncbi-grch38.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-02-25 15:37:27 +01:00
Ricardo Wurmus 5bf7102265
gnu: r-genomicinteractions: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.1.
2020-02-22 23:39:27 +01:00
Ricardo Wurmus 5ea4f604ab
gnu: r-cicero: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.1.
[propagated-inputs]: Add r-tidyr.
2020-02-22 23:39:20 +01:00
Ricardo Wurmus 8017eb0ae8
gnu: r-ggm: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-ggm): Move this variable from here...
* gnu/packages/bioconductor.scm (r-ggm): ...to here.
2020-02-22 20:42:15 +01:00
Ricardo Wurmus d66901e2c3
gnu: r-depecher: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
2020-02-19 23:00:13 +01:00
Ricardo Wurmus f607098f05
gnu: r-mixomics: Update to 6.10.8.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
2020-02-19 23:00:08 +01:00
Ricardo Wurmus e01fa33baa
gnu: r-rsubread: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
2020-02-19 23:00:02 +01:00
Ricardo Wurmus f86549cbb6
gnu: r-atacseqqc: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
2020-02-19 22:59:56 +01:00
Ricardo Wurmus 776e98fe05
gnu: r-heatplus: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
2020-02-19 22:59:49 +01:00
Ricardo Wurmus effbf7d986
gnu: r-biocsingular: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
2020-02-19 22:59:44 +01:00