Ricardo Wurmus
ef3ce37eeb
gnu: r-genefilter: Update to 1.82.1.
...
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
56524dc465
gnu: r-edger: Update to 3.42.2.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
d9d920403a
gnu: r-deseq2: Update to 1.40.1.
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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a9e68f103
gnu: r-biocparallel: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
69e954bb0a
gnu: r-annotationdbi: Update to 1.62.1.
...
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
931ac0735f
gnu: r-densvis: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
06b903963c
gnu: r-delayedarray: Update to 0.26.2.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2.
[propagated-inputs]: Add r-s4arrays.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
01faf51999
gnu: r-bandits: Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
13dde61328
gnu: r-bambu: Update to 3.2.2.
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* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6401f048cf
gnu: r-amplican: Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1.
[propagated-inputs]: Remove r-clustercrit; add r-cluster.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
0861bca905
gnu: r-affyplm: Update to 1.76.1.
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* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a58dc01d3
gnu: Add r-s4arrays.
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* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6aa299aa1c
gnu: r-ggpicrust2: Update to 1.6.3.
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* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.3.
2023-05-09 15:24:13 +02:00
Ricardo Wurmus
bd3ef47877
gnu: r-biomartr: Update to 1.0.3.
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* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.3.
2023-05-09 15:24:13 +02:00
Mădălin Ionel Patrașcu
0e09e8ab15
gnu: Add r-multibac.
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* gnu/packages/bioconductor.scm (r-multibac): New variable.
2023-05-08 10:34:06 +02:00
Ricardo Wurmus
3f8c4899a9
gnu: Add r-ggpicrust2.
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* gnu/packages/bioconductor.scm (r-ggpicrust2): New variable.
2023-05-02 10:14:37 +02:00
Ricardo Wurmus
9bb428ad68
gnu: Add r-microbiomestat.
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* gnu/packages/bioconductor.scm (r-microbiomestat): New variable.
2023-05-02 10:14:37 +02:00
Ricardo Wurmus
62ed97c07d
gnu: Add r-lefser.
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* gnu/packages/bioconductor.scm (r-lefser): New variable.
2023-05-02 10:14:37 +02:00
Ricardo Wurmus
85c137adde
gnu: r-motifstack: Update to 1.44.1.
...
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.1.
2023-04-29 23:52:00 +02:00
Ricardo Wurmus
f2ad160acd
gnu: r-chippeakanno: Update to 3.34.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.1.
2023-04-29 23:52:00 +02:00
Ricardo Wurmus
46d78bf045
gnu: r-hpar: Avoid internet access.
...
ExperimentHub::createHubAccessors needs internet access. When R tests if the
package can be loaded it runs zzz.R, which contains the call to
createHubAccessors. We set the variable GUIX_BUILD to conditionally disable
this call.
* gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases:
'set-HOME and 'avoid-internet-access.
2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6cb123b190
gnu: r-phyloseq: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e0c28e52e4
gnu: r-tximeta: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
2023-04-29 20:28:08 +02:00
Ricardo Wurmus
a605826139
gnu: r-tricycle: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c33697b714
gnu: r-biscuiteer: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
04978d4592
gnu: r-omnipathr: Update to 3.8.0.
...
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
b2a3e274ec
gnu: r-omicade4: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
15f364a933
gnu: r-dmrseq: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3862877bb2
gnu: r-dada2: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
56586f9b9e
gnu: r-bsseq: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
096133af16
gnu: r-biotmle: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0f594abe26
gnu: r-biotip: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
5a5d466e15
gnu: r-bioqc: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
cb91d8ff79
gnu: r-bionet: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e1292069fc
gnu: r-bionero: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
26c76918cb
gnu: r-biomvcclass: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ce9ee69644
gnu: r-mvcclass: Update to 1.74.0.
...
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3d49b388a5
gnu: r-biomformat: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c10979dcbe
gnu: r-biodb: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4eb1e7e542
gnu: r-biocdockermanager: Update to 1.11.0.
...
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4684b0d333
gnu: r-biocthis: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
fbd4e9195f
gnu: r-basilisk: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d91cc19ee9
gnu: r-basilisk-utils: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ad0efa110e
gnu: r-dir-expiry: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1b80b39aa7
gnu: r-genetclassifier: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
939155e312
gnu: r-minet: Update to 3.58.0.
...
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d297d24edb
gnu: r-biobtreer: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1ff662c8e2
gnu: r-bgeedb: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
189f9d805e
gnu: r-bgeecall: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4dd9fdb68f
gnu: r-beclear: Update to 2.16.0.
...
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
2023-04-29 20:28:07 +02:00
