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Author SHA1 Message Date
Nicolas Goaziou 5a977eb98c
gnu: emacs-keycast: Update to 1.3.3. 
* gnu/packages/emacs-xyz.scm (emacs-keycast): Update to 1.3.3.

Change-Id: I771419e3cd2281fa8577e411e66fe7d006a91f89
 2024-01-02 00:43:09 +01:00
Nicolas Goaziou 0a5cde84f6
gnu: emacs-json-mode: Update to 1.9.0. 
* gnu/packages/emacs-xyz.scm (emacs-json-mode): Update to 1.9.0.

Change-Id: I47d1ff6f21cdb1055ab0dea61e0768f391087a2e
 2024-01-02 00:43:09 +01:00
Nicolas Goaziou c38dd0c482
gnu: emacs-js2-mode: Update to 20231224. 
* gnu/packages/emacs-xyz.scm (emacs-js2-mode): Update to 20231224.

Change-Id: Iffbe84ddee2559b526ba4345f4ff14f6ac1ca050
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou 2c5cf24680
gnu: emacs-jinx: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-jinx): Update to 1.1.

Change-Id: I58919dd335a7f93339b362e95fc99449e80d2c31
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou 60dc957e2f
gnu: emacs-inf-ruby: Update to 2.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-inf-ruby): Update to 2.8.1.

Change-Id: I7f46a1ee645a24f96077cc70bf0ad30706979eb5
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou ff808d4d22
gnu: emacs-helm: Update to 3.9.6. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.9.6.

Change-Id: Ica2d7af2db908e37f17f6e4f8d8b83de3a5af349
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou 47a67d34b2
gnu: emacs-haskell-mode: Update to 17.5. 
* gnu/packages/emacs-xyz.scm (emacs-haskell-mode): Update to 17.5.
* gnu/packages/patches/emacs-haskell-mode-no-redefine-builtin.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Apply file deletion.

Change-Id: Ic7d11737af87995610ecf2c3178320901991423d
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou 8855e3017c
gnu: emacs-gptel: Update to 0.5.5. 
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.5.5.

Change-Id: I3d158ab5a5cd0277c210de706cc78a0561eca1d9
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou d7f6c26691
gnu: emacs-geiser: Update to 0.30. 
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.30.

Change-Id: I18d7c0132a13f8306de536c240edae8521ec9864
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou 3bb78ceb9d
gnu: emacs-emms-print-metadata: Update to 17. 
* gnu/packages/emacs-xyz.scm (emacs-emms-print-metadata): Update to 17.

Change-Id: I9d09cdf200cebab408f103ab33075a0b55973b68
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou 1f500b96b5
gnu: emacs-eldev: Update to 1.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.8.1.

Change-Id: Iaaa7ac51401114706b7d4192e363c7a358d86f47
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou 3e19d2106b
gnu: emacs-el-patch: Update to 3.1. 
* gnu/packages/emacs-xyz.scm (emacs-el-patch): Update to 3.1.

Change-Id: Iba1df4faccb7c87052c48e5bed9f974092e9e3ea
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou ac0e32fca2
gnu: emacs-ebib: Update to 2.40.3. 
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.40.3.
[propagated-inputs]: Add EMACS-COMPAT.

Change-Id: I7d37822ee5c41f5155ceb8e6b518a86dfcc9b5b3
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou 8853096fbb
gnu: emacs-docker: Update to 2.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-docker): Update to 2.3.1.

Change-Id: Ib463a11ce6295118a846692b480edc4464a80d8f
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou baea8607b6
gnu: emacs-denote: Update to 2.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-denote): Update to 2.2.0.

Change-Id: I0552023075748b859dff361794726b7955873d0d
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou 113cb79808
gnu: emacs-corfu: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 1.1.

Change-Id: Ic2737697cfe4f5005172e05ab5d7343eb9f0ca23
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou 9e02261d5e
gnu: emacs-consult-flycheck: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-consult-flycheck): Update to 1.0.

Change-Id: Ic52b212be42f59f70365d907d6b8992b7fc1101e
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou 116b63bbab
gnu: emacs-consult: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 1.1.

Change-Id: I303c64cef5419be1b8ff66a30ca9b7f8f44ccfa1
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou f1059e2c26
gnu: emacs-code-cells: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-code-cells): Update to 0.4.

Change-Id: Iac21fa3441fc85387ebc3d404205bd4f8716359f
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou 4103d685c0
gnu: emacs-clojure-mode: Update to 5.18.1. 
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.18.1.

Change-Id: I374f3ebca45fdce8ed84036fe999ace26d73c1ea
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou ea2eaaa46c
gnu: emacs-clj-refactor: Update to 3.11.2. 
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): Update to 3.11.2.

Change-Id: I338a2a8a172d5ea486f1d693b7a8c52cca3ec1f7
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou 8b41c305d8
gnu: emacs-cider: Update to 1.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.12.0.

Change-Id: Icc26d1b51125913009e425279d59db123d3722e1
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 3b8ff1d101
gnu: emacs-cape: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-cape): Update to 1.1.

Change-Id: I7b2c1c415e62d4c13d0f3d5b946d93423dc08fb4
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 551e159467
gnu: emacs-async: Run tests. 
* gnu/packages/emacs-xyz.scm (emacs-async)[arguments]: Run tests.
[native-inputs]: Add EMACS-BUTTERCUP.

Change-Id: Ifa442644dbd259afb5584fbb4160a8b2346a6364
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 0f9beffa43
gnu: emacs-async: Update to 1.9.8. 
* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.8.

Change-Id: I2b83724cee2f77d49417c104f7ab0bf299c671ea
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 78c55428c3
gnu: emacs-buttercup: Update to 1.33. 
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.33.

Change-Id: Ie98b77b883b084886797680ef317b9668f1d0445
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 3320775063
gnu: emacs-beframe: Update to 1.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-beframe): Update to 1.0.0.

Change-Id: I1df7f004c24cc783869421f656a59610006fcf90
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 0306d83bed
gnu: emacs-apheleia: Update to 4.0. 
* gnu/packages/emacs-xyz.scm (emacs-apheleia): Update to 4.0.

Change-Id: I2d61a20e434400f8dbae7d33894ab6f6134c9630
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 30a7f0212a
gnu: emacs-vertico-posframe: Update to 0.7.5. 
* gnu/packages/emacs-xyz.scm (emacs-vertico-posframe): Update to 0.7.5.

Change-Id: Ifff04b43f978e0664cafca2ab8b8e5a8b826bca4
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 9e195fa0ed
gnu: emacs-ebdb: Update to 0.8.20. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.20.

Change-Id: Ib3420c220beadc022bf3e65c8d904a0237f9dd18
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou 08c08b22b2
gnu: emacs-tramp: Update to 2.6.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.2.0.

Change-Id: Id3db704243d269b1b0979a4ed2fe36bd42f8e9bb
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou 4dc30915cc
gnu: emacs-kind-icon: Update to 0.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.2.1.

Change-Id: Id0fe5f72a3252cf3bf7348cd45db89da9e80b6ec
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou cab4cf27dc
gnu: emacs-eldoc: Update to 1.15.0. 
* gnu/packages/emacs-xyz.scm (emacs-eldoc): Update to 1.15.0.

Change-Id: Icea7f7d60301892e9476b930ab19a85f41b29f4f
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou 6ca99feaf5
gnu: emacs-subed: Update to 1.2.11. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.11.

Change-Id: Ib3838ec91afdeefef267df49394ee4b1f75fa63a
 2024-01-02 00:43:00 +01:00
Nicolas Goaziou 2bfcb104b7
gnu: emacs-auctex: Update to 13.2.3. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.3.

Change-Id: Iabeb142f7fe1f5fcf925f788263c76eb0bbf1382
 2024-01-02 00:43:00 +01:00
Nicolas Goaziou 8f8fbb79ba
gnu: emacs-rec-mode: Update to 1.9.3. 
* gnu/packages/databases.scm (emacs-rec-mode): Update to 1.9.3.

Change-Id: I4268c08171b75442a6ba5b5da2887ae9764df98d
 2024-01-02 00:42:55 +01:00
Ricardo Wurmus ee0cf3b9ff
gnu: r-seurat-utils: Update to 2.5.0-1.c0374cc. 
* gnu/packages/bioinformatics.scm (r-seurat-utils): Update to 2.5.0-1.c0374cc.
[propagated-inputs]: Add r-databaselinke-r, r-enhancedvolcano, r-foreach,
r-job, r-magrittr, r-pheatmap, r-plotly, r-qs, r-rstudioapi, and r-tidyverse.

Change-Id: Iea2df8205357e7717c0adec00f6852794817d295
 2024-01-01 19:22:11 +01:00
Ricardo Wurmus 679560ffca
gnu: Add r-databaselinke-r. 
* gnu/packages/bioinformatics.scm (r-databaselinke-r): New variable.

Change-Id: I0cfcb5b6810b7afebbb9ccb02aafcce05507536c
 2024-01-01 19:21:59 +01:00
Ricardo Wurmus 510c2206e4
gnu: Add r-job. 
* gnu/packages/cran.scm (r-job): New variable.

Change-Id: I37a0870bd22d5bc2e700f843fca49f242a197440
 2024-01-01 19:21:37 +01:00
Ricardo Wurmus ff586211aa
gnu: Remove r-rmetasim. 
This package fails to build and has been archived on CRAN in 2021.

* gnu/packages/cran.scm (r-rmetasim): Remove variable.

Change-Id: I46a6c98d7e05faac6f83e29dfb21196a69bae56b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 00e6f55ddb
gnu: r-batchelor: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1.

Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus c8d1f64f40
gnu: r-genomeinfodb: Update to 1.38.5. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5.

Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus b0580a05be
gnu: r-seuratdisk: Update to 0.0.0.9021-1.877d4e1. 
* gnu/packages/cran.scm (r-seuratdisk): Update to 0.0.0.9021-1.877d4e1.

Change-Id: Iab1426efe5b792aacf19ab15e9d6d95be0bac38b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 2510849ec9
gnu: r-sparsearray: Update to 1.2.3. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3.

Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 31e882e4b1
gnu: r-genomicscores: Update to 2.14.3. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3.

Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus e15b95c126
gnu: r-metapod: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1.

Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 5673484cbc
gnu: r-biocneighbors: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1.

Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus a72c6ba19a
gnu: r-genomeinfodb: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4.

Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 25d7dbd61c
gnu: Add r-inext. 
* gnu/packages/cran.scm (r-inext): New variable.

Change-Id: I6a87cfb57bfc8000520b98999cf260d2873f0b61
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 513994aead
import/cran: Restore format-inputs. 
This fixes a regression introduced in commit
e6223017d9 causing the selected input style to
be ignored.

* guix/import/cran.scm (format-inputs): New procedure.
(maybe-inputs): Use it.

Change-Id: I0d36f972fcb9888ed2be4ec9360bbcab13c25c5d
 2024-01-01 14:35:15 +01:00