91c41b8ce7
gnu: r-annotationforge: Update to 1.40.2.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.40.2.
2023-03-31 15:25:24 +02:00
473bd926cf
gnu: r-anvil: Update to 1.10.2.
...
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.10.2.
2023-03-31 15:25:24 +02:00
2c3383e8d8
gnu: r-amaretto: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.14.0.
2023-03-31 15:25:24 +02:00
56de91b712
gnu: Add fbautostart.
...
* gnu/packages/wm.scm (fbautostart): New variable.
2023-03-31 14:45:27 +02:00
1c6238794b
gnu: Add emu8051.
...
* gnu/packages/emulators.scm (emu8051): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-31 19:31:47 +08:00
a368e3cf6b
gnu: Add tree-sitter-heex.
...
gnu/packages/tree-sitter.scm (tree-sitter-heex): New variable.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-03-31 08:10:29 +04:00
e914ae1571
gnu: linux-libre 5.15: Update to 5.15.105.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.105.
(linux-libre-5.15-pristine-source): Update hash.
2023-03-30 23:09:25 -04:00
3967426686
gnu: linux-libre 6.1: Update to 6.1.22.
...
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.22.
(linux-libre-6.1-pristine-source): Update hash.
2023-03-30 23:09:25 -04:00
efcaa0d710
gnu: linux-libre: Update to 6.2.9.
...
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.9.
(linux-libre-6.2-pristine-source): Update hash.
2023-03-30 23:09:25 -04:00
cb0ae06d76
gnu: icedove: Update to 102.9.1 [fixes CVE-2023-28427].
...
* gnu/packages/gnuzilla.scm (%icedove-version): Update to 102.9.1.
(%icedove-build-id, thunderbird-comm-l10n): Update accordingly.
2023-03-31 00:45:47 +02:00
e7558d1647
gnu: Add zsh-completions
...
* gnu/packages/shellutils.scm (zsh-completions): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:17 +02:00
8c76eb6168
gnu: Add zsh-history-substring-search
...
* gnu/packages/shellutils.scm (zsh-history-substring-search): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:17 +02:00
6d0ad93020
services: pam-limits-service-type: Deprecate file-like object support in favour for lists as service value.
...
* doc/guix.texi (Base Services): Document it.
* gnu/local.mk: Register test.
* gnu/services/base.scm (pam-limits-service-type): Accept both lists and
file-like objects. Deprecate file-like object support.
* gnu/tests/pam.scm: New file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:16 +02:00
ed50531885
services: base: Deprecate 'pam-limits-service' procedure.
...
* doc/guix.texi (Base Services): Replace pam-limits-service with pam-limits-service-type.
* gnu/packages/benchmark.scm (python-locust)[description]: Update index anchor to manual.
* gnu/services/base.scm (pam-limits-service-type): Set default value.
(pam-limits-service): Deprecate procedure.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:16 +02:00
59878230f4
system: Remove obsolete GUIX_LOCPATH workaround.
...
* gnu/system.scm (operating-system-environment-variables): Do not set GUIX_LOCPATH.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:16 +02:00
1984d56b0e
gnu: Add scilab.
...
* gnu/packages/maths.scm (scilab): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:16 +02:00
13b2d110ee
gnu: Add suitesparse-3.
...
* gnu/packages/maths.scm (suitesparse-3): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:16 +02:00
f4d7b901db
gnu: matio: Add header file.
...
* gnu/packages/maths.scm (matio):
[arguments] (phases): Add phase install-matioConfig.h.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-30 23:18:16 +02:00
42b938ae8c
gnu: Add audmes.
...
* gnu/packages/engineering.scm (audmes): New variable.
2023-03-30 22:40:09 +02:00
be5e280e5f
Revert "gnu: network-manager: Update to 1.43.4."
...
This reverts commit 01984774a2https://issues.guix.gnu.org/62496 ).
Reported-by: John Kehayias <john.kehayias@protonmail.com>
2023-03-30 15:57:14 -04:00
7ceedc7df7
gnu: conan: Update to 2.0.2.
...
* gnu/packages/package-management.scm (conan): Update to 2.0.2.
[arguments]: Delete relax-requirements phase. Update patch-paths phase.
Add new patch-hard-coded-GCC-references, use-current-cmake-for-tests and
configure-tests phases. Update check phase.
[native-inputs]: Replace autoconf with autoconf-wrapper. Add libtool.
2023-03-30 15:57:14 -04:00
57c3662ddd
gnu: conan: Use gexps and remove input labels.
...
* gnu/packages/package-management.scm (conan) [arguments]: Use gexps. Use
search-input-file in patch-paths phase.
[native-inputs]: Remove labels.
2023-03-30 15:57:14 -04:00
113146d31c
gnu: r-mumin: Update to 1.47.5.
...
* gnu/packages/statistics.scm (r-mumin): Update to 1.47.5.
[propagated-inputs]: Add r-insight.
2023-03-30 19:21:08 +02:00
c029bac121
gnu: r-tclust: Update to 1.5-4.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.5-4.
2023-03-30 19:21:08 +02:00
aadc68f297
gnu: r-car: Update to 3.1-2.
...
* gnu/packages/statistics.scm (r-car): Update to 3.1-2.
2023-03-30 19:21:08 +02:00
25e67fdc4f
gnu: r-robustbase: Update to 0.95-1.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.95-1.
2023-03-30 19:21:08 +02:00
8a69976f6c
gnu: r-hexbin: Update to 1.28.3.
...
* gnu/packages/statistics.scm (r-hexbin): Update to 1.28.3.
2023-03-30 19:21:08 +02:00
042dc3b65d
gnu: r-glmnet: Update to 4.1-7.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-7.
2023-03-30 19:21:08 +02:00
5f416aa0e4
gnu: r-segmented: Update to 1.6-3.
...
* gnu/packages/statistics.scm (r-segmented): Update to 1.6-3.
2023-03-30 19:21:08 +02:00
3fa9594824
gnu: r-rcurl: Update to 1.98-1.12.
...
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.12.
[inputs]: Remove zlib.
2023-03-30 19:21:08 +02:00
082d5806ec
gnu: r-gtable: Update to 0.3.3.
...
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.3.
2023-03-30 19:21:08 +02:00
8ad283c780
gnu: r-rmarkdown: Update to 2.21.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.21.
[propagated-inputs]: Add r-fontawesome.
2023-03-30 19:21:08 +02:00
ffcb110ad9
gnu: r-hms: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-hms): Update to 1.1.3.
[propagated-inputs]: Remove r-ellipsis.
2023-03-30 19:21:08 +02:00
8ec84e8895
gnu: r-dbplyr: Update to 2.3.2.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.2.
2023-03-30 19:21:08 +02:00
d8fe4c68a6
gnu: r-dplyr: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.1.
2023-03-30 19:21:08 +02:00
b748ea05cc
gnu: r-gdtools: Update to 0.3.3.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.3.3.
[propagated-inputs]: Remove r-memoise.
2023-03-30 19:21:07 +02:00
6eeebd8021
gnu: r-automap: Update to 1.1-9.
...
* gnu/packages/cran.scm (r-automap): Update to 1.1-9.
2023-03-30 19:21:07 +02:00
0c3a344570
gnu: r-mlr3pipelines: Update to 0.4.3.
...
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.4.3.
2023-03-30 19:21:07 +02:00
9074ca5a74
gnu: r-hardhat: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-hardhat): Update to 1.3.0.
[propagated-inputs]: Add r-cli.
2023-03-30 19:21:07 +02:00
9dd47c2f13
gnu: r-distributional: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-distributional): Update to 0.3.2.
2023-03-30 19:21:07 +02:00
516753cc10
gnu: r-rlecuyer: Update to 0.3-7.
...
* gnu/packages/cran.scm (r-rlecuyer): Update to 0.3-7.
2023-03-30 19:21:07 +02:00
dddd4906ad
gnu: r-zyp: Update to 0.11-1.
...
* gnu/packages/cran.scm (r-zyp): Update to 0.11-1.
2023-03-30 19:21:07 +02:00
81ea6fa24e
gnu: r-rstantools: Update to 2.3.1.
...
* gnu/packages/cran.scm (r-rstantools): Update to 2.3.1.
2023-03-30 19:21:07 +02:00
d9e52d2124
gnu: r-caret: Update to 6.0-94.
...
* gnu/packages/cran.scm (r-caret): Update to 6.0-94.
2023-03-30 19:21:07 +02:00
4519597494
gnu: r-imager: Update to 0.42.19.
...
* gnu/packages/cran.scm (r-imager): Update to 0.42.19.
2023-03-30 19:21:07 +02:00
32db2dc977
gnu: r-parallelly: Update to 1.35.0.
...
* gnu/packages/cran.scm (r-parallelly): Update to 1.35.0.
2023-03-30 19:21:07 +02:00
9d169137ff
gnu: r-multidplyr: Update to 0.1.3.
...
* gnu/packages/cran.scm (r-multidplyr): Update to 0.1.3.
2023-03-30 19:21:07 +02:00
b23d3430f0
gnu: r-tmb: Update to 1.9.3.
...
* gnu/packages/cran.scm (r-tmb): Update to 1.9.3.
2023-03-30 19:21:07 +02:00
87070072b7
gnu: r-dofuture: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-dofuture): Update to 1.0.0.
[propagated-inputs]: Add r-future-apply.
2023-03-30 19:21:07 +02:00
d700fda57c
gnu: r-gam: Update to 1.22-2.
...
* gnu/packages/cran.scm (r-gam): Update to 1.22-2.
2023-03-30 19:21:07 +02:00
a0f6305eb1
gnu: r-abctools: Update to 1.1.6.
...
* gnu/packages/cran.scm (r-abctools): Update to 1.1.6.
2023-03-30 19:21:07 +02:00
2ccd430a4c
gnu: r-nodbi: Update to 0.9.2.
...
* gnu/packages/cran.scm (r-nodbi): Update to 0.9.2.
2023-03-30 19:21:07 +02:00
c938338563
gnu: r-officer: Update to 0.6.2.
...
* gnu/packages/cran.scm (r-officer): Update to 0.6.2.
2023-03-30 19:21:07 +02:00
eed688ea87
gnu: r-factominer: Update to 2.8.
...
* gnu/packages/cran.scm (r-factominer): Update to 2.8.
2023-03-30 19:21:07 +02:00
8449d3ad7f
gnu: r-ellipse: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.4.
2023-03-30 19:21:07 +02:00
f986523017
gnu: r-dtplyr: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-dtplyr): Update to 1.3.1.
[propagated-inputs]: Remove r-crayon.
2023-03-30 19:21:07 +02:00
a9585eea75
gnu: r-arules: Update to 1.7-6.
...
* gnu/packages/cran.scm (r-arules): Update to 1.7-6.
2023-03-30 19:21:07 +02:00
9908de506b
gnu: r-simplermarkdown: Update to 0.0.6.
...
* gnu/packages/cran.scm (r-simplermarkdown): Update to 0.0.6.
2023-03-30 19:21:07 +02:00
d3587e39b3
gnu: r-trend: Update to 1.1.5.
...
* gnu/packages/cran.scm (r-trend): Update to 1.1.5.
2023-03-30 19:21:07 +02:00
15c8ac0509
gnu: r-pillar: Update to 1.9.0.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.9.0.
2023-03-30 19:21:07 +02:00
3ded5e1b6e
gnu: r-vctrs: Update to 0.6.1.
...
* gnu/packages/cran.scm (r-vctrs): Update to 0.6.1.
2023-03-30 19:21:07 +02:00
620e7a53b1
gnu: r-xfun: Update to 0.38.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.38.
2023-03-30 19:21:07 +02:00
8fff272506
gnu: r-cli: Update to 3.6.1.
...
* gnu/packages/cran.scm (r-cli): Update to 3.6.1.
2023-03-30 19:21:07 +02:00
a0ae32bb9c
gnu: r-smurf: Update to 1.1.5.
...
* gnu/packages/cran.scm (r-smurf): Update to 1.1.5.
[propagated-inputs]: Remove r-speedglm.
2023-03-30 19:21:06 +02:00
26a4304fc6
gnu: r-jomo: Update to 2.7-5.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.7-5.
2023-03-30 19:21:06 +02:00
7d4a752afa
gnu: r-dendextend: Update to 1.17.1.
...
* gnu/packages/cran.scm (r-dendextend): Update to 1.17.1.
2023-03-30 19:21:06 +02:00
83a957e4a9
gnu: r-ctrdata: Update to 1.12.1.
...
* gnu/packages/cran.scm (r-ctrdata): Update to 1.12.1.
[propagated-inputs]: Add r-jqr.
2023-03-30 19:21:06 +02:00
eab11487f1
gnu: r-ps: Update to 1.7.3.
...
* gnu/packages/cran.scm (r-ps): Update to 1.7.3.
2023-03-30 19:21:06 +02:00
9b95e9cfd4
gnu: r-spelling: Update to 2.2.1.
...
* gnu/packages/cran.scm (r-spelling): Update to 2.2.1.
2023-03-30 19:21:06 +02:00
59914968d7
gnu: r-htmltools: Update to 0.5.5.
...
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.5.
2023-03-30 19:21:06 +02:00
bd4bf3c84c
gnu: r-modelr: Update to 0.1.11.
...
* gnu/packages/cran.scm (r-modelr): Update to 0.1.11.
2023-03-30 19:21:06 +02:00
2848f73fab
gnu: r-googlesheets4: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.1.0.
[propagated-inputs]: Add r-lifecycle and r-withr.
2023-03-30 19:21:06 +02:00
f54dc51b9a
gnu: r-googledrive: Update to 2.1.0.
...
* gnu/packages/cran.scm (r-googledrive): Update to 2.1.0.
2023-03-30 19:21:06 +02:00
b4960c9936
gnu: r-datawizard: Update to 0.7.0.
...
* gnu/packages/cran.scm (r-datawizard): Update to 0.7.0.
2023-03-30 19:21:06 +02:00
d601d4ecf5
gnu: r-rgl: Update to 1.1.3.
...
* gnu/packages/cran.scm (r-rgl): Update to 1.1.3.
[source]: Delete minified JavaScript.
[arguments]: Process JavaScript source file in new build phase.
[native-inputs]: Add esbuild.
2023-03-30 19:21:06 +02:00
0a780005a7
gnu: r-covr: Update to 3.6.2.
...
* gnu/packages/cran.scm (r-covr): Update to 3.6.2.
[source]: Delete minified JavaScript in sources.
[arguments]: Minify JavaScript sources in new build phase.
[native-inputs]: Add esbuild, sources for bootstrap.js, sources for
html5shiv.js, and sources for respond.js.
2023-03-30 19:21:03 +02:00
65afc8fa44
gnu: Add texlive-halloweenmath.
...
* gnu/packages/tex.scm (texlive-halloweenmath): New variable.
2023-03-30 18:16:32 +02:00
a30dcbffeb
gnu: Add texlive-pict2e.
...
* gnu/packages/tex.scm (texlive-pict2e): New variable.
2023-03-30 18:16:31 +02:00
abf686239f
gnu: Add emacs-exwm-modeline.
...
* gnu/packages/emacs-xyz.scm (emacs-exwm-modeline): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-30 18:16:31 +02:00
0c3d4cf38a
gnu: Add emacs-beframe.
...
* gnu/packages/emacs-xyz.scm (emacs-beframe): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-30 18:16:31 +02:00
cca7d02463
gnu: Add emacs-tintin-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-tintin-mode): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-30 18:16:30 +02:00
7ff5deda4d
gnu: emacs-sphinx-doc: Run tests.
...
* gnu/packages/emacs-xyz.scm (emacs-sphinx-doc)[arguments]: Run tests.
2023-03-30 18:16:30 +02:00
918ad58945
gnu: Add emacs-sphinx-doc.
...
* gnu/packages/emacs-xyz.scm (emacs-sphinx-doc): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-30 18:16:30 +02:00
a6f98c64f6
gnu: open-adventure: Update to 1.14.
...
* gnu/packages/games.scm (open-adventure): Update to 1.14.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-30 20:53:16 +08:00
caf163536a
gnu: Add r-maxprobes.
...
* gnu/packages/bioinformatics.scm (r-maxprobes): New variable.
2023-03-30 14:40:01 +02:00
033955b4e8
gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38.
...
* gnu/packages/bioinformatics.scm
(r-illuminahumanmethylationepicanno-ilm10b5-hg38): New variable.
2023-03-30 14:38:45 +02:00
928e9aa236
gnu: Add r-shinymethyl.
...
* gnu/packages/bioconductor.scm (r-shinymethyl): New variable.
2023-03-30 14:35:50 +02:00
a5997202b8
gnu: Add r-flowsorted-blood-epic.
...
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): New variable.
2023-03-30 14:34:05 +02:00
0024e4e6d4
gnu: Add r-flowsorted-blood-450k.
...
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): New variable.
2023-03-30 14:33:59 +02:00
e93a570fd6
gnu: Add r-enmix.
...
* gnu/packages/bioconductor.scm (r-enmix): New variable.
2023-03-30 14:31:02 +02:00
96e81b18b9
gnu: Add r-champ.
...
* gnu/packages/bioconductor.scm (r-champ): New variable.
2023-03-30 14:26:40 +02:00
418811783e
gnu: Add r-rpmm.
...
* gnu/packages/cran.scm (r-rpmm): New variable.
2023-03-30 14:24:04 +02:00
bd35053677
gnu: Add r-dmrcate.
...
* gnu/packages/bioconductor.scm (r-dmrcate): New variable.
2023-03-30 14:22:27 +02:00
a969d91ca5
gnu: Add r-dss.
...
* gnu/packages/bioconductor.scm (r-dss): New variable.
2023-03-30 14:15:59 +02:00
6d1cc311e5
gnu: Add r-missmethyl.
...
* gnu/packages/bioconductor.scm (r-missmethyl): New variable.
2023-03-30 14:10:45 +02:00
de1c49c25d
gnu: Add r-illuminahumanmethylationepicanno-ilm10b4-hg19.
...
* gnu/packages/bioconductor.scm
(r-illuminahumanmethylationepicanno-ilm10b4-hg19): New variable.
2023-03-30 14:07:42 +02:00
1254ce1342
gnu: Add r-illumina450probevariants-db.
...
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): New variable.
2023-03-30 14:01:42 +02:00
a8ea4626ae
gnu: Add r-ruv.
...
* gnu/packages/cran.scm (r-ruv): New variable.
2023-03-30 14:01:37 +02:00
fcc8b808e7
gnu: Add r-champdata.
...
* gnu/packages/bioconductor.scm (r-champdata): New variable.
2023-03-30 13:55:40 +02:00
884daf0f4b
gnu: Add r-prettydoc.
...
* gnu/packages/cran.scm (r-prettydoc): New variable.
2023-03-30 13:55:17 +02:00
Ricardo Wurmus
Danny Milosavljevic
c4droid
ivan-p-sokolov@ya.ru
Leo Famulari
Jonathan Brielmaier
Timo Wilken
Bruno Victal
Nicolas Graves
Maxim Cournoyer
Nicolas Goaziou
Miguel Moreno
Jamie Cullen
Rostislav Svoboda