b4e1268c7b
gnu: r-fgsea: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
2019-12-15 15:39:12 +01:00
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gnu: r-dose: Update to 3.12.0.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
2019-12-15 15:39:12 +01:00
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gnu: r-enrichplot: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
2019-12-15 15:39:11 +01:00
08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
2019-12-15 15:39:11 +01:00
6374984a20
gnu: r-mlinterfaces: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
2019-12-15 15:39:11 +01:00
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gnu: r-annaffy: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
2019-12-15 15:39:11 +01:00
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gnu: r-a4core: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
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gnu: r-a4classif: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
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gnu: r-a4preproc: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
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gnu: r-a4reporting: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
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gnu: r-a4base: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
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gnu: r-a4: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
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gnu: r-abseqr: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
2019-12-15 15:39:10 +01:00
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gnu: r-bacon: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
2019-12-15 15:39:10 +01:00
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gnu: r-rgadem: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
2019-12-15 15:39:10 +01:00
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gnu: r-motiv: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
2019-12-15 15:39:10 +01:00
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gnu: r-motifstack: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
2019-12-15 15:39:10 +01:00
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gnu: r-genomicscores: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
2019-12-15 15:39:10 +01:00
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gnu: r-atacseqqc: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
2019-12-15 15:39:10 +01:00
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gnu: r-gofuncr: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
2019-12-15 15:39:10 +01:00
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gnu: r-abaenrichment: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
2019-12-15 15:39:10 +01:00
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gnu: r-annotationfuncs: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
2019-12-15 15:39:10 +01:00
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gnu: r-annotationtools: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
2019-12-15 15:39:10 +01:00
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gnu: r-allelicimbalance: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
2019-12-15 15:39:10 +01:00
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gnu: r-aucell: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
2019-12-15 15:39:09 +01:00
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gnu: r-ebimage: Update to 4.28.1.
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* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
2019-12-15 15:39:09 +01:00
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gnu: r-yamss: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
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gnu: r-gtrellis: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
2019-12-15 15:39:09 +01:00
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gnu: r-somaticsignatures: Update to 2.22.0.
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* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
2019-12-15 15:39:09 +01:00
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gnu: r-yapsa: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
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gnu: r-gcrma: Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
2019-12-15 15:39:09 +01:00
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gnu: r-simpleaffy: Update to 2.62.0.
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* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
2019-12-15 15:39:09 +01:00
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gnu: r-yaqcaffy: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
2019-12-15 15:39:09 +01:00
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gnu: r-quantro: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
2019-12-15 15:39:09 +01:00
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gnu: r-yarn: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
2019-12-15 15:39:08 +01:00
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gnu: r-roar: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
2019-12-15 15:39:08 +01:00
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gnu: r-xbseq: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
2019-12-15 15:39:08 +01:00
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gnu: r-massspecwavelet: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
2019-12-15 15:39:08 +01:00
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gnu: r-xcms: Update to 3.8.1.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
2019-12-15 15:39:08 +01:00
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gnu: r-wrench: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
2019-12-15 15:39:08 +01:00
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gnu: r-wiggleplotr: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
2019-12-15 15:39:08 +01:00
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gnu: r-widgettools: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
2019-12-15 15:39:08 +01:00
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gnu: r-webbioc: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
2019-12-15 15:39:08 +01:00
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gnu: r-zfpkm: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
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gnu: r-rbowtie2: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
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gnu: r-progeny: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
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gnu: r-arrmnormalization: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
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gnu: r-biocfilecache: Update to 1.10.2.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
2019-12-15 15:39:07 +01:00
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gnu: r-iclusterplus: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
2019-12-15 15:39:07 +01:00
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gnu: r-rbowtie: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
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gnu: r-sgseq: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
2019-12-15 15:39:07 +01:00
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gnu: r-rhisat2: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
2019-12-15 15:39:07 +01:00
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gnu: r-quasr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
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gnu: r-rqc: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
2019-12-15 15:39:07 +01:00
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gnu: r-birewire: Update to 3.18.0.
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* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
2019-12-15 15:39:07 +01:00
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gnu: r-birta: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
2019-12-15 15:39:07 +01:00
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gnu: r-ropls: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
2019-12-15 15:39:06 +01:00
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gnu: r-biosigner: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
2019-12-15 15:39:06 +01:00
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gnu: r-annotatr: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
2019-12-15 15:39:06 +01:00
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gnu: r-rsubread: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
2019-12-15 15:39:06 +01:00
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gnu: r-flowutils: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
2019-12-15 15:39:06 +01:00
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gnu: r-consensusclusterplus: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
2019-12-15 15:39:06 +01:00
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gnu: r-flowcore: Update to 1.52.1.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
2019-12-15 15:39:06 +01:00
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gnu: r-flowmeans: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
2019-12-15 15:39:06 +01:00
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gnu: r-flowsom: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
2019-12-15 15:39:06 +01:00
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gnu: r-mixomics: Update to 6.10.6.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
2019-12-15 15:39:06 +01:00
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gnu: r-rcistarget: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
2019-12-15 15:39:06 +01:00
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gnu: r-cicero: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
2019-12-15 15:39:06 +01:00
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gnu: r-genie3: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
2019-12-15 15:39:06 +01:00
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gnu: r-roc: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
2019-12-15 15:39:05 +01:00
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gnu: r-watermelon: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
2019-12-15 15:39:05 +01:00
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gnu: r-gdsfmt: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
2019-12-15 15:39:05 +01:00
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gnu: r-bigmelon: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
2019-12-15 15:39:05 +01:00
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gnu: r-seqbias: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
2019-12-15 15:39:05 +01:00
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gnu: r-reqon: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
2019-12-15 15:39:05 +01:00
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gnu: r-wavcluster: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
2019-12-15 15:39:05 +01:00
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gnu: r-timeseriesexperiment: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
2019-12-15 15:39:05 +01:00
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gnu: r-variantfiltering: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
2019-12-15 15:39:05 +01:00
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gnu: r-genomegraphs: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
2019-12-15 15:39:05 +01:00
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gnu: r-wavetiling: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
2019-12-15 15:39:05 +01:00
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gnu: r-variancepartition: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
2019-12-15 15:39:05 +01:00
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gnu: r-htqpcr: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
2019-12-15 15:39:04 +01:00
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gnu: r-unifiedwmwqpcr: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
2019-12-15 15:39:04 +01:00
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gnu: r-illuminaio: Update to 0.28.0.
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* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
2019-12-15 15:38:56 +01:00
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gnu: r-geoquery: Update to 2.54.1.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
2019-12-15 15:38:56 +01:00
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gnu: r-scone: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
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gnu: r-scdd: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
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gnu: r-noiseq: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
2019-12-15 15:38:56 +01:00
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gnu: r-monocle: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
2019-12-15 15:38:56 +01:00
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gnu: r-mast: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
2019-12-15 15:38:56 +01:00
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gnu: r-icobra: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
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gnu: r-ihw: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
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gnu: r-lpsymphony: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
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gnu: r-ebseq: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
2019-12-15 15:38:55 +01:00
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gnu: r-deds: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-deds): Update to 1.60.0.
2019-12-15 15:38:55 +01:00
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gnu: r-dnacopy: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.60.0.
2019-12-15 15:38:55 +01:00
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gnu: r-copynumber: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.26.0.
2019-12-15 15:38:55 +01:00
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gnu: r-chipexoqual: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.10.0.
2019-12-15 15:38:55 +01:00
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gnu: r-savr: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.24.0.
2019-12-15 15:38:55 +01:00
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gnu: r-biocsingular: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus