33a80e1110
gnu: tar: Replace with 1.34 [fixes CVE-2021-20193].
...
* gnu/packages/base.scm (tar)[replacement]: New field.
(tar-1.34): New variable.
2021-11-12 02:52:46 -05:00
893a31ec20
gnu: rust-rustc-version-0.3: Update home page.
...
* gnu/packages/crates-io.scm (rust-rustc-version-0.3)[home-page]: Update it.
2021-11-11 15:39:19 +00:00
a0fc9e38fa
gnu: ciri-long: Move Cython to native inputs.
...
* gnu/packages/bioinformatics.scm (ciri-long)[inputs]: Move python-cython from
here...
[native-inputs]: ...to here.
2021-11-11 15:39:19 +00:00
c4e5fabb6e
gnu: ciri-long: Fix reference to ccs.
...
* gnu/packages/bioinformatics.scm (ciri-long)[arguments]: Add build phase
"fix-reference-to-ccs".
[inputs]: Add circtools.
2021-11-11 15:39:19 +00:00
6be47c5bc5
gnu: Add circtools.
...
* gnu/packages/bioinformatics.scm (circtools): New variable.
2021-11-11 15:39:19 +00:00
b8c9f061e1
gnu: Add bioparser.
...
* gnu/packages/bioinformatics.scm (bioparser): New variable.
2021-11-11 15:39:19 +00:00
4052310e91
gnu: Add biosoup.
...
* gnu/packages/bioinformatics.scm (biosoup): New variable.
2021-11-11 15:39:19 +00:00
b905d7c1d6
gnu: Add rust-seq-io-0.3.
...
* gnu/packages/crates-io.scm (rust-seq-io-0.3): New variable.
2021-11-11 15:39:19 +00:00
e624622cfd
gnu: Add rust-bio-0.32.
...
* gnu/packages/crates-io.scm (rust-bio-0.32): New variable.
2021-11-11 15:39:18 +00:00
33802ba09e
gnu: Add rust-snafu-0.6.
...
* gnu/packages/crates-io.scm (rust-snafu-0.6): New variable.
2021-11-11 15:39:18 +00:00
0e5127c0aa
gnu: Add rust-statrs-0.12.
...
* gnu/packages/crates-io.scm (rust-statrs-0.12): New variable.
2021-11-11 15:39:18 +00:00
7d00ffc8fc
gnu: Add rust-snafu-derive-0.6.
...
* gnu/packages/crates-io.scm (rust-snafu-derive-0.6): New variable.
2021-11-11 15:39:18 +00:00
01da92eef3
gnu: Add rust-fastq-0.6.
...
* gnu/packages/crates-io.scm (rust-fastq-0.6): New variable.
2021-11-11 15:39:18 +00:00
86fa7a70d8
gnu: Add rust-parasailors-0.3.
...
* gnu/packages/crates-io.scm (rust-parasailors-0.3): New variable.
2021-11-11 15:39:18 +00:00
c576b3b369
gnu: Add rust-parasail-sys-0.2.
...
* gnu/packages/crates-io.scm (rust-parasail-sys-0.2): New variable.
2021-11-11 15:39:17 +00:00
067de0230e
gnu: Add rust-bio-0.33.
...
* gnu/packages/crates-io.scm (rust-bio-0.33): New variable.
2021-11-11 15:39:17 +00:00
60d2566e05
gnu: Add rust-glam-0.17.
...
* gnu/packages/crates-io.scm (rust-glam-0.17): New variable.
2021-11-11 15:39:17 +00:00
43260f681b
gnu: Add rust-glam-0.16.
...
* gnu/packages/crates-io.scm (rust-glam-0.16): New variable.
2021-11-11 15:39:17 +00:00
15abac14ac
gnu: Add rust-glam-0.15.
...
* gnu/packages/crates-io.scm (rust-glam-0.15): New variable.
2021-11-11 15:39:17 +00:00
d44ae04cfd
gnu: Add rust-statrs-0.14.
...
* gnu/packages/crates-io.scm (rust-statrs-0.14): New variable.
2021-11-11 15:39:16 +00:00
7af81d8c7f
gnu: Add rust-nalgebra-macros-0.1.
...
* gnu/packages/crates-io.scm (rust-nalgebra-macros-0.1): New variable.
2021-11-11 15:39:16 +00:00
02bf5e1431
gnu: Add rust-nalgebra-0.26.
...
* gnu/packages/crates-io.scm (rust-nalgebra-0.26): New variable.
2021-11-11 15:39:16 +00:00
5f42641ba7
gnu: Add rust-enum-map-0.6.
...
* gnu/packages/crates-io.scm (rust-enum-map-0.6): New variable.
2021-11-11 15:39:16 +00:00
7c4a6245c7
gnu: Add rust-enum-map-derive-0.4.
...
* gnu/packages/crates-io.scm (rust-enum-map-derive-0.4): New variable.
2021-11-11 15:39:16 +00:00
dba9c7d7e0
gnu: Add rust-statrs-0.13.
...
* gnu/packages/crates-io.scm (rust-statrs-0.13): New variable.
2021-11-11 15:39:16 +00:00
d75a5c5d89
gnu: Add rust-glam-0.14.
...
* gnu/packages/crates-io.scm (rust-glam-0.14): New variable.
2021-11-11 15:39:15 +00:00
4089e0df25
gnu: Add rust-array-macro-1.
...
* gnu/packages/crates-io.scm (rust-array-macro-1): New variable.
2021-11-11 15:39:15 +00:00
6e73186849
gnu: Add rust-matrixcompare-0.3.
...
* gnu/packages/crates-io.scm (rust-matrixcompare-0.3): New variable.
2021-11-11 15:39:15 +00:00
0be2f293e4
gnu: Add rust-matrixcompare-mock-0.1.
...
* gnu/packages/crates-io.scm (rust-matrixcompare-mock-0.1): New variable.
2021-11-11 15:39:15 +00:00
15b51023f2
gnu: Add rust-getset-0.0.9.
...
* gnu/packages/crates-io.scm (rust-getset-0.0.9): New variable.
2021-11-11 15:39:15 +00:00
0c90fd7856
gnu: Add rust-newtype-derive-0.1.
...
* gnu/packages/crates-io.scm (rust-newtype-derive-0.1): New variable.
2021-11-11 15:39:14 +00:00
3f6fd2d0da
gnu: Add rust-rustc-version-0.1.
...
* gnu/packages/crates-io.scm (rust-rustc-version-0.1): New variable.
2021-11-11 15:39:14 +00:00
e7d7434895
gnu: Add rust-semver-0.1.
...
* gnu/packages/crates-io.scm (rust-semver-0.1): New variable.
2021-11-11 15:39:14 +00:00
9a6b269b81
gnu: Add rust-multimap-0.8.
...
* gnu/packages/crates-io.scm (rust-multimap-0.8): New variable.
2021-11-11 15:39:14 +00:00
0885604727
gnu: Add rust-bv-0.11.
...
* gnu/packages/crates-io.scm (rust-bv-0.11): New variable.
2021-11-11 15:39:14 +00:00
4ef9ef0aa3
gnu: Add rust-feature-probe-0.1.
...
* gnu/packages/crates-io.scm (rust-feature-probe-0.1): New variable.
2021-11-11 15:39:14 +00:00
6a4b4d3c1d
gnu: Add rust-bio-types-0.12.
...
* gnu/packages/crates-io.scm (rust-bio-types-0.12): New variable.
2021-11-11 15:39:13 +00:00
94abd4b740
gnu: Add rust-triple-accel-0.3.
...
* gnu/packages/crates-io.scm (rust-triple-accel-0.3): New variable.
2021-11-11 15:39:13 +00:00
c285cb7ebe
gnu: Add rust-glam-0.13.
...
* gnu/packages/crates-io.scm (rust-glam-0.13): New variable.
2021-11-11 15:39:13 +00:00
9886c012de
gnu: Add rust-matrixcompare-0.2.
...
* gnu/packages/crates-io.scm (rust-matrixcompare-0.2): New variable.
2021-11-11 15:39:13 +00:00
8f8863026e
gnu: Add rust-matrixcompare-core-0.1.
...
* gnu/packages/crates-io.scm (rust-matrixcompare-core-0.1): New variable.
2021-11-11 15:39:13 +00:00
fb4340e1ee
gnu: Add rust-spirv-std-0.4.
...
* gnu/packages/crates-io.scm (rust-spirv-std-0.4): New variable.
2021-11-11 15:39:13 +00:00
3cd8964a80
gnu: Add rust-spirv-std-macros-0.4.
...
* gnu/packages/crates-io.scm (rust-spirv-std-macros-0.4): New variable.
2021-11-11 15:39:12 +00:00
e80093153a
gnu: Add rust-spirv-types-0.4.
...
* gnu/packages/crates-io.scm (rust-spirv-types-0.4): New variable.
2021-11-11 15:39:12 +00:00
bcbd0fc8da
gnu: Add rust-simba-0.4.
...
* gnu/packages/crates-io.scm (rust-simba-0.4): New variable.
2021-11-11 15:39:12 +00:00
2f06d1bb51
gnu: Add rust-rand-isaac-0.3.
...
* gnu/packages/crates-io.scm (rust-rand-isaac-0.3): New variable.
2021-11-11 15:39:12 +00:00
e182b691ea
gnu: rust-heck-0.3: Update to 0.3.2.
...
* gnu/packages/crates-io.scm (rust-heck-0.3): Update to 0.3.2.
2021-11-11 15:39:12 +00:00
d29fa445e5
gnu: Add rust-bytemuck-1.5.
...
* gnu/packages/crates-io.scm (rust-bytemuck-1.5): New variable.
2021-11-11 15:39:11 +00:00
c7ffcdea70
gnu: Add rust-rand-distr-0.4.
...
* gnu/packages/crates-io.scm (rust-rand-distr-0.4): New variable.
2021-11-11 15:39:11 +00:00
0cd5039345
gnu: Add rust-special-0.8.
...
* gnu/packages/crates-io.scm (rust-special-0.8): New variable.
2021-11-11 15:39:11 +00:00
935d53537c
gnu: Add rust-random-0.12.
...
* gnu/packages/crates-io.scm (rust-random-0.12): New variable.
2021-11-11 15:39:11 +00:00
8be33436db
gnu: Add rust-assert-0.7.
...
* gnu/packages/crates-io.scm (rust-assert-0.7): New variable.
2021-11-11 15:39:11 +00:00
458b1c22bf
gnu: Add rust-rand-pcg-0.3.
...
* gnu/packages/crates-io.scm (rust-rand-pcg-0.3): New variable.
2021-11-11 15:39:11 +00:00
88319040c1
gnu: Add rust-average-0.13.
...
* gnu/packages/crates-io.scm (rust-average-0.13): New variable.
2021-11-11 15:39:10 +00:00
de772f8bf4
gnu: Add rust-easy-cast-0.4.
...
* gnu/packages/crates-io.scm (rust-easy-cast-0.4): New variable.
2021-11-11 15:39:10 +00:00
e326a4fbe3
gnu: Add rust-float-ord-0.3.
...
* gnu/packages/crates-io.scm (rust-float-ord-0.3): New variable.
2021-11-11 15:39:10 +00:00
bb8a0af292
gnu: Add rust-serde-big-array-0.3.
...
* gnu/packages/crates-io.scm (rust-serde-big-array-0.3): New variable.
2021-11-11 15:39:10 +00:00
87a1ca383a
gnu: Add rust-rand-xoshiro-0.6.
...
* gnu/packages/crates-io.scm (rust-rand-xoshiro-0.6): New variable.
2021-11-11 15:39:10 +00:00
d487e12576
gnu: Add rust-rkyv-0.6.
...
* gnu/packages/crates-io.scm (rust-rkyv-0.6): New variable.
2021-11-11 15:39:09 +00:00
5b6a550690
gnu: Add rust-bytecheck-0.5.
...
* gnu/packages/crates-io.scm (rust-bytecheck-0.5): New variable.
2021-11-11 15:39:09 +00:00
11fb842ae9
gnu: Add rust-ptr-meta-0.1.
...
* gnu/packages/crates-io.scm (rust-ptr-meta-0.1): New variable.
2021-11-11 15:39:09 +00:00
574647b855
gnu: Add rust-ptr-meta-derive-0.1.
...
* gnu/packages/crates-io.scm (rust-ptr-meta-derive-0.1): New variable.
2021-11-11 15:39:09 +00:00
8ef352a773
gnu: Add rust-bytecheck-derive-0.5.
...
* gnu/packages/crates-io.scm (rust-bytecheck-derive-0.5): New variable.
2021-11-11 15:39:09 +00:00
97ead3fbf3
gnu: Add rust-simba-0.5.
...
* gnu/packages/crates-io.scm (rust-simba-0.5): New variable.
2021-11-11 15:39:09 +00:00
723ff70e21
gnu: Add rust-approx-0.5.
...
* gnu/packages/crates-io.scm (rust-approx-0.5): New variable.
2021-11-11 15:39:08 +00:00
1a3f3879b3
gnu: Add rust-wide-0.6.
...
* gnu/packages/crates-io.scm (rust-wide-0.6): New variable.
2021-11-11 15:39:08 +00:00
40cf0ddc29
gnu: Add rust-triple-accel-0.4.
...
* gnu/packages/crates-io.scm (rust-triple-accel-0.4): New variable.
2021-11-11 15:39:08 +00:00
f2cbee9238
gnu: Add rust-seahash-4.
...
* gnu/packages/crates-io.scm (rust-seahash-4): New variable.
2021-11-11 15:39:08 +00:00
3cd3703b36
gnu: Add rust-rkyv-derive-0.6.
...
* gnu/packages/crates-io.scm (rust-rkyv-derive-0.6): New variable.
2021-11-11 15:39:08 +00:00
f20e0f6ba7
gnu: Add rust-safe-arch-0.5.
...
* gnu/packages/crates-io.scm (rust-safe-arch-0.5): New variable.
2021-11-11 15:39:08 +00:00
3d1c984ad8
gnu: bitcoin-core-0.20: Update to 0.20.2.
...
* gnu/packages/finance.scm (bitcoin-core-0.20): Update to 0.20.2.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-11 10:29:46 +01:00
5592058e9d
gnu: Add python-wand.
...
* gnu/packages/python-xyz.scm (python-wand): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-11 00:21:37 +01:00
800afd26f4
gnu: poetry: Update to 1.1.11.
...
* gnu/packages/python-build.scm (poetry): Update to 1.1.11.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-11 00:18:19 +01:00
ac2bd4a319
gnu: python-poetry-core: Update to 1.0.7.
...
* gnu/packages/python-xyz.scm (python-poetry-core): Update to 1.0.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-11 00:18:15 +01:00
650dcc18e7
gnu: Add BLAKE3 command line tool.
...
* gnu/packages/crypto.scm (b3sum): New variable.
2021-11-10 11:35:58 -05:00
f7019cc8be
gnu: Add BLAKE3 Rust implementation.
...
* gnu/packages/crypto.scm (rust-blake3-0.3): New variable.
2021-11-10 11:35:58 -05:00
43618fe3e1
gnu: rust-duct-0.13: Update to 0.13.5.
...
* gnu/packages/crates-io.scm (rust-duct-0.13): Update to 0.13.5.
[arguments]<cargo-inputs>: Use rust-os-pipe-0.9 instead of rust-os-pipe-0.8.
2021-11-10 11:35:58 -05:00
ee7c96a6a4
gnu: rust-os-pipe: Update to 0.9.2.
...
* gnu/packages/crates-io.scm (rust-os-pipe-0.8): Replace with ...
(rust-os-pipe-0.9): ... new variable.
(arguments)<#:cargo-inputs>: Replace rust-nix-0.15 with rust-libc-0.2.
2021-11-10 11:35:51 -05:00
140b486437
gnu: Add emacs-ement.
...
* gnu/packages/emacs-xyz.scm (emacs-ement): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-10 14:58:21 +01:00
4c6f9450a5
gnu: rust-speculate-0.1: Fix build.
...
* gnu/packages/crates-io.scm (rust-speculate-0.1)[arguments]: Don't skip
build, skip tests.
[cargo-inputs]: Replace rust-quote-1 with 0.6, rust-syn-0.15 with 0.14.
2021-11-10 15:44:56 +02:00
e765520510
gnu: Add emacs-plz.
...
* gnu/packages/emacs-xyz.scm (emacs-plz): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-10 14:31:36 +01:00
e469911596
gnu: emacs-posframe: Update to 1.1.1.
...
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.1.1.
2021-11-10 13:50:45 +01:00
6492e6cfe8
gnu: emacs-minions: Update to 0.3.7.
...
* gnu/packages/emacs-xyz.scm (emacs-minions): Update to 0.3.7.
2021-11-10 13:48:10 +01:00
159ee05130
gnu: fcitx5-configtool: Update to 5.0.8.
...
* gnu/packages/fcitx5.scm (fcitx5-configtool): Update to 5.0.8.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-11-10 20:24:54 +08:00
dcf48a178f
gnu: fcitx5-qt: Update to 5.0.7.
...
* gnu/packages/fcitx5.scm (fcitx5-qt): Update to 5.0.7.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-11-10 20:22:27 +08:00
d16650c05d
gnu: fcitx5-gtk: Update to 5.0.9.
...
* gnu/packages/fcitx5.scm (fcitx5-gtk): Update to 5.0.9.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-11-10 20:21:29 +08:00
fcc4d62d33
gnu: fcitx5: Update to 5.0.10.
...
* gnu/packages/fcitx5.scm (fcitx5): Update to 5.0.10.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-11-10 20:20:23 +08:00
4e45e89a7b
gnu: rust-regex-1: Fix building.
...
* gnu/packages/crates-io.scm (rust-regex-1)[cargo-development-inputs]:
Replace rust-quickcheck-0.8 with 1, rust-rand-0.6 with 0.8.
2021-11-10 12:24:27 +02:00
7a4a77e05a
gnu: certbot, python-acme: Update to 1.18.0.
...
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.18.0.
2021-11-10 01:03:37 -05:00
3b7619b244
gnu: di: Update to 4.51.
...
* gnu/packages/admin.scm (di): Update to 4.51.
[arguments]: Don't explicitly return #t from phases.
2021-11-10 02:19:14 +01:00
a7e7385202
gnu: libhx: Update to 4.2.
...
* gnu/packages/c.scm (libhx): Update to 4.2.
2021-11-10 02:19:14 +01:00
42eb5b67e3
gnu: samba: Update to 4.13.14.
...
* gnu/packages/samba.scm (samba): Update to 4.13.14.
2021-11-10 00:09:40 +02:00
721f3eda74
gnu: emacs-corfu: Update to 0.14.
...
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.14.
2021-11-09 20:45:20 +01:00
9e48ac29eb
gnu: dunst: Update to 1.7.1.
...
* gnu/packages/dunst.scm (dunst): Update to 1.7.1.
2021-11-09 17:38:54 +01:00
510a591b16
gnu: libaom: Update to 3.2.0.
...
* gnu/packages/video.scm (libaom): Update to 3.2.0.
2021-11-09 10:30:02 -05:00
f8ac788b95
gnu: sdlpop: Fix executable location.
...
* gnu/packages/games.scm (sdlpop)[arguments]: Substitute location of executable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-09 13:23:52 +01:00
7c5db47730
gnu: emacs-doom-modeline: Update to 3.2.1.
...
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 3.2.1.
2021-11-09 12:48:42 +01:00
9934ea4e8b
gnu: mozjs-78: Update to 78.6.1.
...
* gnu/packages/gnuzilla.scm (mozjs-78): Update to 78.6.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-09 12:45:08 +01:00
c071984300
gnu: emacs-vertico: Update to 0.15.
...
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.15.
2021-11-09 12:41:46 +01:00
4d03acbb02
gnu: debianutils: Update to 5.5-1.
...
* gnu/packages/debian.scm (debianutils): Update to 5.5-1.
[arguments]: Remove custom 'create-translations phase.
2021-11-09 08:48:49 +02:00
1b95a7b2b1
gnu: debootstrap: Update to 1.0.126.
...
* gnu/packages/debian.scm (debootstrap): Update to 1.0.126.
2021-11-09 08:48:35 +02:00
17263b3011
gnu: libseccomp: Update to 2.5.3.
...
* gnu/packages/linux.scm (libseccomp): Update to 2.5.3.
2021-11-08 23:00:57 +01:00
704c23cbef
gnu: libx86emu: Update to 3.4.
...
* gnu/packages/virtualization.scm (libx86emu): Update to 3.4.
[arguments]: Don't explicitly return #t from phases.
2021-11-08 23:00:57 +01:00
a2d0bee323
gnu: mbuffer: Update to 20211018.
...
* gnu/packages/networking.scm (mbuffer): Update to 20211018.
[native-inputs]: Add which.
2021-11-08 23:00:57 +01:00
f5ab35f9f9
gnu: nbd: Update to 3.22.
...
* gnu/packages/networking.scm (nbd): Update to 3.22.
[native-inputs]: Add bison.
2021-11-08 23:00:57 +01:00
7b89818d00
gnu: plocate: Update to 1.1.13.
...
* gnu/packages/search.scm (plocate): Update to 1.1.13.
2021-11-08 23:00:56 +01:00
8fc7803f54
gnu: minixml: Update to 3.3.
...
* gnu/packages/xml.scm (minixml): Update to 3.3.
2021-11-08 23:00:56 +01:00
d71bd56a8c
gnu: python-jplephem: Update to 2.16.
...
* gnu/packages/astronomy.scm (python-jplephem): Update to 2.16.
2021-11-08 23:00:56 +01:00
2a40b19953
gnu: patchage: Build with Python 3.
...
* gnu/packages/audio.scm (patchage)[arguments]: Run WAF with the default Python.
2021-11-08 23:00:56 +01:00
41cb043a3b
gnu: patchage: Fix home page URL.
...
* gnu/packages/audio.scm (patchage)[home-page]: Fix 404.
2021-11-08 23:00:56 +01:00
c3e70aac9c
gnu: patchage: Update to 1.0.4.
...
* gnu/packages/audio.scm (patchage): Update to 1.0.4.
2021-11-08 23:00:56 +01:00
f40526c608
gnu: qjackctl: Update to 0.9.5.
...
* gnu/packages/audio.scm (qjackctl): Update to 0.9.5.
2021-11-08 23:00:56 +01:00
9b14b26f0a
gnu: packages: Remove last year's deprecations.
...
* gnu/packages/admin.scm (guile3.0-shepherd): Remove variable.
* gnu/packages/benchmark.scm (imb-openmpi): Likewise.
* gnu/packages/boost.scm (boost-with-python3): Likewise.
* gnu/packages/pep.scm (python-pep-adapter)[inputs]: Adjust accordingly.
* gnu/packages/cpp.scm (nlohmann-json-cpp): Likewise.
* gnu/packages/games.scm (openrct2)[inputs]: Adjust accordingly.
* gnu/packages/cups.scm (escpr): Likewise.
* gnu/packages/django.scm (python-django-jsonfield): Likewise.
* gnu/packages/emacs-xyz.scm (emacs-modus-operandi-theme)
(emacs-modus-vivendi-theme): Likewise.
* gnu/packages/engineering.scm (kicad-i18l): Likewise.
* gnu/packages/enlightenment.scm (enlightenment-wayland): Likewise.
* gnu/packages/firmware.scm (opensbi-qemu-virt, opensbi-qemu-sifive-u):
Likewise.
* gnu/packages/fonts.scm (font-gnu-freefont-ttf, font-open-dyslexic):
Likewise.
* gnu/packages/game-development.scm (guile3.0-chickadee)
(python-sge-pygame): Likewise.
* gnu/packages/games.scm (retux)[inputs]: Adjust accordingly.
* gnu/packages/gnome-xyz.scm (numix-theme): Likewise.
* gnu/packages/gnupg.scm (guile3.0-gcrypt): Likewise.
* gnu/packages/gstreamer.scm (gst-transcoder): Likewise.
* gnu/packages/gtk.scm (guile3.0-cairo, guile3.0-present, guile3.0-rsvg):
Likewise.
* gnu/packages/guile-xyz.scm (guile3.0-colorized, guile3.0-commonmark)
(guile3.0-config, guile3.0-email, guile3.0-fibers, guile3.0-gi)
(guile3.0-hall, guile3.0-hashing, guile3.0-haunt, guile3.0-ics)
(guile3.0-irregex, guile3.0-lib, guile3.0-mcron, guile3.0-minikanren)
(guile3.0-ncurses, guile3.0-ncurses/gpm, guile3.0-newt, guile3.0-parted)
(guile3.0-pfds, guile3.0-picture-language, guile3.0-semver)
(guile3.0-simple-zmq, guile3.0-squee, guile3.0-syntax-highlight)
(guile3.0-websocket, guile3.0-wisp, guile3.0-xapian): Likewise.
* gnu/packages/guile.scm (define-deprecated-guile3.0-package)
(guile3.0-json, guile3.0-gdbm-ffi, guile3.0-sqlite3)
(guile3.0-bytestructures, guile3.0-git): Likewise.
* gnu/packages/haskell-apps.scm (ghc-stylish-haskell): Likewise.
* gnu/packages/linux.scm (linux-libre-arm-veyron): Likewise.
* gnu/packages/mail.scm (guile3.0-mailutils): Likewise.
* gnu/packages/monitoring.scm (python2-graphite-web): Likewise.
* gnu/packages/package-management.scm (guile3.0-guix): Likewise.
* gnu/packages/package-management.scm (python-conda): Likewise.
* gnu/packages/phabricator.scm (libphutil): Likewise.
* gnu/packages/plotutils.scm (guile3.0-charting): Likewise.
* gnu/packages/python-xyz.scm (python2-smmap2, python-glances)
(python-smmap2): Likewise.
* gnu/packages/shells.scm (oil-shell): Likewise.
* gnu/packages/sqlite.scm (sqlite-with-column-metadata): Likewise.
* gnu/packages/ssh.scm (guile3.0-ssh): Likewise.
* gnu/packages/terminals.scm (et): Likewise.
* gnu/packages/tls.scm (guile3.0-gnutls): Likewise.
* gnu/packages/vlang.scm (v): Likewise.
* gnu/packages/vpn.scm (wireguard): Likewise.
* gnu/packages/web-browsers.scm (next, sbcl-next): Likewise.
* gnu/packages/xorg.scm (transset-df): Likewise.
2021-11-08 23:00:55 +01:00
590074a749
gnu: python-cachelib: Update to 0.4.1.
...
* gnu/packages/python-xyz.scm (python-cachelib): Update to 0.4.1.
[arguments]: Enable tests.
[native-inputs]: Add python-pytest and python-pytest-xprocess.
2021-11-08 22:36:34 +02:00
71dc19d9cb
gnu: Add python-cachelib.
...
* gnu/packages/python-xyz.scm (python-cachelib): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 22:36:34 +02:00
2181133eed
gnu: Add python-emoji.
...
* gnu/packages/python-xyz.scm (python-emoji): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 22:36:34 +02:00
3a4107b286
gnu: Add python-immutabledict.
...
* gnu/packages/python-xyz.scm (python-immutabledict): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 22:36:34 +02:00
b43ad8400a
gnu: Add python-filetype.
...
* gnu/packages/python-xyz.scm (python-filetype): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 22:36:33 +02:00
a6dc9f783f
gnu: hypercorn: Honor #:tests? in 'check' phase.
...
* gnu/packages/python-web.scm (hypercorn)[arguments]: Honor #:tests? in
'check' phase.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 22:36:33 +02:00
556a3ac3af
gnu: hypercorn: Update to 0.11.2.
...
* gnu/packages/python-web.scm (hypercorn): Update to 0.11.2.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 22:36:33 +02:00
782ec05926
gnu: python-hypercorn: Remove "python-" prefix from name.
...
Hypercorn is mainly a CLI application but also supports a module interface.
* gnu/packages/python-web.scm (python-hypercorn): New deprecated variable.
(hypercorn): Renamed from the respective above.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 22:36:28 +02:00
b6e1ba6104
gnu: libavif: Restrict dependency on rav1e to x86_64.
...
* gnu/packages/image.scm (libavif)[arguments]<#:configure-flags>: Pass
"-DAVIF_CODEC_RAV1E=ON" only on x84_64.
<#:phases>: Don't return #t.
[inputs]: Add rav1e only on x86_64.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-11-08 12:22:13 -05:00
2d2f50b30c
gnu: linux-libre 4.19: Update to 4.19.216.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.216.
(linux-libre-4.19-pristine-source): Update hash.
2021-11-08 10:41:56 -05:00
6b2d9fa9c4
gnu: linux-libre 5.4: Update to 5.4.158.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.158.
(linux-libre-5.4-pristine-source): Update hash.
2021-11-08 10:41:56 -05:00
66250eabf6
gnu: linux-libre 5.10: Update to 5.10.78.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.78.
(linux-libre-5.10-pristine-source): Update hash.
2021-11-08 10:41:56 -05:00
a7c0698c88
gnu: linux-libre 5.14: Update to 5.14.17.
...
* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.17.
(linux-libre-5.14-pristine-source): Update hash.
2021-11-08 10:41:53 -05:00
f52719dfad
gnu: Add python-giturlparse.
...
* gnu/packages/python-web.scm (python-giturlparse): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 10:50:40 +02:00
0502be5baf
gnu: cl-fiasco: Update to 0.0.1-2.bb47d2f.
...
* gnu/packages/lisp-check.scm: (sbcl-fiasco): Update to 0.0.1-2.bb47d2f.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-08 09:34:02 +01:00
07a68587b0
gnu: Add cl-kaputt.
...
* gnu/packages/lisp-check.scm: (sbcl-kaputt, cl-kaputt, ecl-kaputt): New
variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-08 09:25:25 +01:00
6ec0c6c767
gnu: Add cl-alloy.
...
* gnu/packages/lisp-xyz.scm (sbcl-alloy, cl-alloy, ecl-alloy): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-08 09:16:28 +01:00
9371cf2138
gnu: Add python-astropy.
...
This patch was co-authored with Vinicius Monego.
* gnu/packages/astronomy.scm (python-astropy): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 10:05:04 +02:00
a168679509
gnu: python-pyerfa: Adjust inputs.
...
* gnu/packages/astronomy.scm (python-pyerfa)[inputs]: Move python-numpy to ...
[propagated-inputs]: ... here.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 10:05:04 +02:00
27b0e71ecd
gnu: python-pytest-astropy: Adjust inputs.
...
* gnu/packages/python-check.scm (python-pytest-astropy)[arguments]: Add new
phase to skip a version check bug.
[native-inputs]: Remove python-pytest. Move python-hypothesis,
python-pytest-arraydiff, python-pytest-astropy-header, python-pytest-cov,
python-pytest-filter-subpackage, python-pytest-openfiles,
python-pytest-remotedata to ...
[propagated-inputs]: ... here.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 10:04:31 +02:00
56dcaff827
gnu: stagit: Prepare for cross-compiling.
...
* gnu/packages/version-control.scm (stagit)[arguments]: Use
cc-for-target.
2021-11-08 09:28:56 +02:00
e6a9e7d3c3
gnu: stagit: Update to 0.9.6.
...
* gnu/packages/version-control.scm (stagit): Update to 0.9.6.
[source]: Update fetch method and location of source repository.
[home-page]: Update home page.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-08 09:28:03 +02:00
e53e0d08f7
gnu: ffmpeg-2.8: Update to 2.8.18.
...
* gnu/packages/video.scm (ffmpeg-2.8): Update to 2.8.18.
2021-11-08 09:21:00 +02:00
aa58fb5cf3
gnu: ffmpeg-3.4: Update to 3.4.9.
...
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.9.
2021-11-08 09:20:59 +02:00
7de409c2b5
gnu: ffmpeg: Update to 4.4.1.
...
* gnu/packages/video.scm (ffmpeg): Update to 4.4.1.
2021-11-08 09:20:56 +02:00
9d25ee30b1
gnu: nginx-documentation: Update to 1.21.4-2791-9385526a9b2d.
...
* gnu/packages/web.scm (nginx-documentation): Update to 1.21.4-2791-9385526a9b2d.
2021-11-08 02:15:24 +01:00
805ca61eb9
gnu: nginx: Update to 1.21.4.
...
* gnu/packages/web.scm (nginx): Update to 1.21.4.
2021-11-08 02:15:24 +01:00
3f4eb02fe5
gnu: fheroes2: Update to 0.9.9.
...
* gnu/packages/games.scm (fheroes2): Update to 0.9.9.
2021-11-08 02:15:24 +01:00
551047838d
gnu: knot: Update to 3.1.4.
...
* gnu/packages/dns.scm (knot): Update to 3.1.4.
2021-11-08 02:15:24 +01:00
e568b14076
gnu: hplip: Update to 3.21.10.
...
* gnu/packages/cups.scm (hplip): Update to 3.21.10.
[snippet]: Make substitution patterns more specific.
[arguments]: Don't explicitly return #t from phases.
2021-11-08 02:15:23 +01:00
e46e144b42
gnu: redkite: Update to 1.3.1.
...
* gnu/packages/audio.scm (redkite): Update to 1.3.1.
2021-11-08 02:15:23 +01:00
55bdb2b33b
gnu: libebur128: Update to 1.2.6.
...
* gnu/packages/audio.scm (libebur128): Update to 1.2.6.
2021-11-08 02:15:23 +01:00
30b67fdb6a
gnu: r-tximeta: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.0.
2021-11-07 22:34:59 +00:00
76f32aae88
gnu: r-biscuiteer: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.8.0.
2021-11-07 22:34:59 +00:00
14ff65b0e8
gnu: r-omnipathr: Update to 3.2.0.
...
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.0.
[propagated-inputs]: Add r-crayon.
2021-11-07 22:34:59 +00:00
2f03e3e1ef
gnu: r-dmrseq: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.14.0.
2021-11-07 22:34:59 +00:00
86a3ae96d1
gnu: r-bsseq: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.30.0.
2021-11-07 22:34:59 +00:00
fd3a180b32
gnu: r-biotmle: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.18.0.
[propagated-inputs]: Remove r-dofuture and r-future.
2021-11-07 22:34:59 +00:00
494379d015
gnu: r-biotip: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.8.0.
2021-11-07 22:34:59 +00:00
b2b920b38e
gnu: r-bioqc: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.22.0.
2021-11-07 22:34:59 +00:00
73ace000f4
gnu: r-bionetstat: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.14.0.
2021-11-07 22:34:59 +00:00
2aebb7bfab
gnu: r-bionet: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.54.0.
2021-11-07 22:34:59 +00:00
95c1308b4f
gnu: r-bionero: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.2.0.
2021-11-07 22:34:59 +00:00
1086cfcb7f
gnu: r-biomvrcns: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.34.0.
2021-11-07 22:34:59 +00:00
bb98b978c3
gnu: r-biomvcclass: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.62.0.
2021-11-07 22:34:58 +00:00
739c420d1e
gnu: r-mvcclass: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.68.0.
2021-11-07 22:34:58 +00:00
29f14a86bf
gnu: r-biomformat: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.22.0.
2021-11-07 22:34:58 +00:00
1503c74ce0
gnu: r-biodb: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.0.
[propagated-inputs]: Add r-biocfilecache.
2021-11-07 22:34:58 +00:00
dbfdfecfd1
gnu: r-biocdockermanager: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.6.0.
2021-11-07 22:34:58 +00:00
79285bf0da
gnu: r-biocthis: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.4.0.
2021-11-07 22:34:58 +00:00
a7a77af71a
gnu: r-basilisk: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.6.0.
2021-11-07 22:34:58 +00:00
fd0d144044
gnu: r-basilisk-utils: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.6.0.
2021-11-07 22:34:58 +00:00
c91514edd1
gnu: r-dir-expiry: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.2.0.
2021-11-07 22:34:58 +00:00
c14f5bd30a
gnu: r-genetclassifier: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.34.0.
2021-11-07 22:34:58 +00:00
b8394117f9
gnu: r-minet: Update to 3.52.0.
...
* gnu/packages/bioconductor.scm (r-minet): Update to 3.52.0.
2021-11-07 22:34:58 +00:00
6cec550e20
gnu: r-biobtreer: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.6.0.
2021-11-07 22:34:58 +00:00
b223a11c41
gnu: r-bgeedb: Update to 2.20.0.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.0.
2021-11-07 22:34:58 +00:00
bdb55dcdf7
gnu: r-bgeecall: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.10.0.
2021-11-07 22:34:58 +00:00
744c9f4351
gnu: r-beclear: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.10.0.
2021-11-07 22:34:58 +00:00
8dd33b890a
gnu: r-megadepth: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.4.0.
2021-11-07 22:34:58 +00:00
7ed7b40b18
gnu: r-ballgown: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.26.0.
2021-11-07 22:34:57 +00:00
558abe3b47
gnu: r-sushi: Update to 1.31.0.
...
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.31.0.
2021-11-07 22:34:57 +00:00
c7641e4327
gnu: r-guitar: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.10.0.
2021-11-07 22:34:57 +00:00
97c0e316d3
gnu: r-chromstar: Update to 1.19.0.
...
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.19.0.
2021-11-07 22:34:57 +00:00
41c4e6391d
gnu: r-snpstats: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.44.0.
2021-11-07 22:34:57 +00:00
ce510880ec
gnu: r-pathview: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.34.0.
2021-11-07 22:34:57 +00:00
a8fb8beb31
gnu: r-ldblock: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.24.0.
2021-11-07 22:34:57 +00:00
7b6b39bd97
gnu: r-kegggraph: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.54.0.
2021-11-07 22:34:57 +00:00
ab00f1b61c
gnu: r-gwascat: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.26.0.
2021-11-07 22:34:57 +00:00
38a7f29374
gnu: r-gviz: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.0.
2021-11-07 22:34:57 +00:00
6d193b3288
gnu: r-ggbio: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.42.0.
2021-11-07 22:34:57 +00:00
b1de4e61a0
gnu: r-erma: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-erma): Update to 1.10.0.
2021-11-07 22:34:57 +00:00
eed4a322f1
gnu: r-catalyst: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.0.
2021-11-07 22:34:57 +00:00
9df8fa7b38
gnu: r-msmstests: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.32.0.
2021-11-07 22:34:57 +00:00
357c74ef3e
gnu: r-msmseda: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.32.0.
2021-11-07 22:34:57 +00:00
2de21518f1
gnu: r-biocio: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-biocio): Update to 1.4.0.
2021-11-07 22:34:56 +00:00
ffcb3606d0
gnu: r-mscoreutils: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.0.
2021-11-07 22:34:56 +00:00
5c75a6d18e
gnu: r-delayedmatrixstats: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.16.0.
2021-11-07 22:34:56 +00:00
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gnu: r-sparsematrixstats: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.6.0.
2021-11-07 22:34:56 +00:00
e4cfcbfda3
gnu: r-scran: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.0.
2021-11-07 22:34:56 +00:00
980e6af8aa
gnu: r-scater: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-scater): Update to 1.22.0.
[propagated-inputs]: Add r-ggrepel.
2021-11-07 22:34:56 +00:00
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gnu: r-scuttle: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.4.0.
2021-11-07 22:34:56 +00:00
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gnu: r-singlecellexperiment: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.16.0.
2021-11-07 22:34:56 +00:00
9f7327588d
gnu: r-chromvar: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.16.0.
2021-11-07 22:34:56 +00:00
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gnu: r-motifmatchr: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.16.0.
2021-11-07 22:34:56 +00:00
d15fac3713
gnu: r-tfbstools: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.32.0.
2021-11-07 22:34:56 +00:00
d6130127e8
gnu: r-cner: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-cner): Update to 1.30.0.
2021-11-07 22:34:56 +00:00
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gnu: r-beachmat: Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.10.0.
2021-11-07 22:34:56 +00:00
29111142d1
gnu: r-rhdf5lib: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.16.0.
2021-11-07 22:34:56 +00:00
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gnu: r-hdf5array: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.0.
2021-11-07 22:34:55 +00:00
77450726d6
gnu: r-hitc: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-hitc): Update to 1.38.0.
2021-11-07 22:34:55 +00:00
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gnu: r-fithic: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-fithic): Update to 1.20.0.
2021-11-07 22:34:55 +00:00
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gnu: r-rgraphviz: Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.38.0.
2021-11-07 22:34:55 +00:00
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gnu: r-s4vectors: Update to 0.32.0.
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* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.0.
2021-11-07 22:34:55 +00:00
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gnu: r-preprocesscore: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.56.0.
2021-11-07 22:34:55 +00:00
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gnu: r-icens: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-icens): Update to 1.66.0.
2021-11-07 22:34:55 +00:00
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gnu: r-m3c: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-m3c): Update to 1.16.0.
2021-11-07 22:34:55 +00:00
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gnu: r-rgreat: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.26.0.
2021-11-07 22:34:55 +00:00
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gnu: r-pcatools: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.6.0.
2021-11-07 22:34:55 +00:00
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gnu: r-biodist: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-biodist): Update to 1.66.0.
2021-11-07 22:34:55 +00:00
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gnu: r-biocworkflowtools: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.20.0.
2021-11-07 22:34:55 +00:00
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gnu: r-biocset: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.0.
2021-11-07 22:34:55 +00:00
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gnu: r-biocpkgtools: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.0.
2021-11-07 22:34:55 +00:00
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gnu: r-biocor: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-biocor): Update to 1.18.0.
2021-11-07 22:34:55 +00:00
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gnu: r-bioconcotk: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.14.0.
2021-11-07 22:34:54 +00:00
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gnu: r-multiassayexperiment: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.20.0.
2021-11-07 22:34:54 +00:00
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gnu: r-grohmm: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.28.0.
2021-11-07 22:34:54 +00:00
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gnu: r-experimenthub: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.0.
2021-11-07 22:34:54 +00:00
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gnu: r-biocviews: Update to 1.62.1.
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* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.62.1.
2021-11-07 22:34:54 +00:00
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gnu: r-biocstyle: Update to 2.22.0.
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* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.22.0.
2021-11-07 22:34:54 +00:00
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gnu: r-biocgraph: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.56.0.
2021-11-07 22:34:54 +00:00
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gnu: r-bioccheck: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.30.0.
2021-11-07 22:34:54 +00:00
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gnu: r-ebarrays: Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.58.0.
2021-11-07 22:34:54 +00:00
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gnu: r-reactomepa: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.38.0.
2021-11-07 22:34:54 +00:00
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gnu: r-graphite: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-graphite): Update to 1.40.0.
[native-inputs]: Remove r-knitr.
2021-11-07 22:34:54 +00:00
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gnu: r-biobroom: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.26.0.
2021-11-07 22:34:54 +00:00
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gnu: r-bioassayr: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.0.
2021-11-07 22:34:54 +00:00
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gnu: r-chemminer: Update to 3.46.0.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.46.0.
[propagated-inputs]: Add r-jsonlite and r-stringi.
2021-11-07 22:34:54 +00:00
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gnu: r-bigpint: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.10.0.
2021-11-07 22:34:53 +00:00
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gnu: r-biggr: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-biggr): Update to 1.30.0.
2021-11-07 22:34:53 +00:00
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gnu: r-hyperdraw: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.46.0.
2021-11-07 22:34:53 +00:00
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gnu: r-hypergraph: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.66.0.
2021-11-07 22:34:53 +00:00
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gnu: r-rsbml: Update to 2.52.0.
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* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.52.0.
2021-11-07 22:34:53 +00:00
4100392b19
gnu: r-bifet: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-bifet): Update to 1.14.0.
2021-11-07 22:34:53 +00:00
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gnu: r-bicare: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-bicare): Update to 1.52.0.
2021-11-07 22:34:53 +00:00
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gnu: r-bhc: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-bhc): Update to 1.46.0.
2021-11-07 22:34:53 +00:00
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gnu: r-bgx: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.60.0.
2021-11-07 22:34:53 +00:00
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gnu: r-bgmix: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.54.0.
2021-11-07 22:34:53 +00:00
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gnu: r-universalmotif: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.1.
2021-11-07 22:34:53 +00:00
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gnu: r-unifiedwmwqpcr: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.30.0.
2021-11-07 22:34:53 +00:00
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gnu: r-htqpcr: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.48.0.
2021-11-07 22:34:53 +00:00
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gnu: r-variancepartition: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.0.
[propagated-inputs]: Remove r-colorramps; add r-matrix and r-rlang.
2021-11-07 22:34:53 +00:00
beb530df2a
gnu: r-variantfiltering: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.30.0.
2021-11-07 22:34:53 +00:00
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gnu: r-timeseriesexperiment: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.12.0.
2021-11-07 22:34:52 +00:00
a326c65428
gnu: r-wavcluster: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.28.0.
2021-11-07 22:34:52 +00:00
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gnu: r-reqon: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.40.0.
2021-11-07 22:34:52 +00:00
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gnu: r-seqbias: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.42.0.
2021-11-07 22:34:52 +00:00
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gnu: r-bigmelon: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.20.0.
[propagated-inputs]: Add r-illuminaio.
2021-11-07 22:34:52 +00:00
0837205009
gnu: r-gdsfmt: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.30.0.
2021-11-07 22:34:52 +00:00
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gnu: r-watermelon: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2021-11-07 22:34:52 +00:00
316bf235c0
gnu: r-roc: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-roc): Update to 1.70.0.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
2021-11-07 22:34:52 +00:00
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gnu: r-genie3: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.16.0.
2021-11-07 22:34:52 +00:00
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gnu: r-circrnaprofiler: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.8.0.
2021-11-07 22:34:52 +00:00
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gnu: r-cicero: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.12.0.
2021-11-07 22:34:52 +00:00
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gnu: r-chicago: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-chicago): Update to 1.22.0.
2021-11-07 22:34:51 +00:00
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gnu: r-rcistarget: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.14.0.
2021-11-07 22:34:51 +00:00
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.10.0.
2021-11-07 22:34:51 +00:00
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gnu: r-mixomics: Update to 6.17.26.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.17.26.
2021-11-07 22:34:51 +00:00
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gnu: r-flowsom: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.2.0.
2021-11-07 22:34:51 +00:00
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gnu: r-cytoml: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.6.0.
2021-11-07 22:34:51 +00:00
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gnu: r-opencyto: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.6.0.
2021-11-07 22:34:51 +00:00
101cad4791
gnu: r-flowstats: Update to 4.6.0.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.6.0.
2021-11-07 22:34:51 +00:00
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gnu: r-flowworkspace: Update to 4.6.0.
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* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.6.0.
2021-11-07 22:34:51 +00:00
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gnu: r-rprotobuflib: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.6.0.
2021-11-07 22:34:51 +00:00
007e62be63
gnu: r-flowclust: Update to 3.32.0.
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* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.32.0.
[inputs]: Remove gsl.
2021-11-07 22:34:51 +00:00
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gnu: r-flowviz: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.58.0.
2021-11-07 22:34:51 +00:00
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gnu: r-ggcyto: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.22.0.
2021-11-07 22:34:51 +00:00
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gnu: r-ncdfflow: Update to 2.40.0.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.40.0.
2021-11-07 22:34:50 +00:00
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gnu: r-flowmeans: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.54.0.
2021-11-07 22:34:50 +00:00
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gnu: r-flowcore: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.6.0.
2021-11-07 22:34:50 +00:00
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gnu: r-cytolib: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.0.
2021-11-07 22:34:50 +00:00
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* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.58.0.
2021-11-07 22:34:50 +00:00
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gnu: r-flowutils: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.58.0.
2021-11-07 22:34:50 +00:00
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gnu: r-rsubread: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.0.
2021-11-07 22:34:50 +00:00
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gnu: r-annotatr: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.20.0.
2021-11-07 22:34:50 +00:00
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gnu: r-biosigner: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.22.0.
2021-11-07 22:34:50 +00:00
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gnu: r-ropls: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.0.
2021-11-07 22:34:50 +00:00
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gnu: r-multidataset: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.22.0.
2021-11-07 22:34:50 +00:00
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gnu: r-birewire: Update to 3.26.0.
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* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.0.
2021-11-07 22:34:50 +00:00
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gnu: r-rqc: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-rqc): Update to 1.28.0.
2021-11-07 22:34:50 +00:00
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gnu: r-quasr: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-quasr): Update to 1.34.0.
[propagated-inputs]: Remove r-biocmanager.
2021-11-07 22:34:49 +00:00
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gnu: r-rhisat2: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.10.0.
2021-11-07 22:34:49 +00:00
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gnu: r-sgseq: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.28.0.
2021-11-07 22:34:49 +00:00
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gnu: r-rbowtie: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.34.0.
[inputs]: Remove zlib.
2021-11-07 22:34:49 +00:00
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gnu: r-iclusterplus: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.30.0.
2021-11-07 22:34:49 +00:00
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gnu: r-biocfilecache: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.0.
2021-11-07 22:34:49 +00:00
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gnu: r-arrmnormalization: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.34.0.
2021-11-07 22:34:49 +00:00
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gnu: r-progeny: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
ba9573b14e
gnu: r-rbowtie2: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.0.0.
[inputs]: Add samtools.
[propagated-inputs]: Add r-magrittr and r-rsamtools.
2021-11-07 22:34:49 +00:00
efbe72addb
gnu: r-zfpkm: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
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gnu: r-zinbwave: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
d43703c41a
gnu: r-webbioc: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.66.0.
2021-11-07 22:34:49 +00:00
b058ff1f75
gnu: r-widgettools: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.72.0.
2021-11-07 22:34:49 +00:00
a4ab371edf
gnu: r-wiggleplotr: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.18.0.
2021-11-07 22:34:49 +00:00
2704f4d596
gnu: r-wrench: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.12.0.
2021-11-07 22:34:49 +00:00
e06acf2682
gnu: r-xcms: Update to 3.16.0.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.0.
[propagated-inputs]: Add r-msfeatures.
2021-11-07 22:34:48 +00:00
482cec7a53
gnu: r-massspecwavelet: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.0.
2021-11-07 22:34:48 +00:00
Mark H Weaver
Ricardo Wurmus
Michael Ford
Vinicius Monego
Tanguy Le Carrour
Leo Famulari
phodina
Efraim Flashner
Nicolas Goaziou
dan
Tobias Geerinckx-Rice
Liliana Marie Prikler
Guillaume Le Vaillant
Christopher Baines
jgart
Sharlatan Hellseher