17495dae46
gnu: Add go-github-com-cention-sany-utf7.
...
* gnu/packages/golang.scm (go-github-com-cention-sany-utf7): New
variable.
Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-11-27 10:20:04 -05:00
8177fec860
gnu: Add go-github-com-go-test-deep.
...
* gnu/packages/golang.scm (go-github-com-go-test-deep): New variable.
Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-11-27 10:17:18 -05:00
ed5fed2c4c
gnu: ruby-3.0: Update to 3.0.5. [security fixes].
...
Fixes: CVE-2021-33621: HTTP response splitting in CGI.
* gnu/packages/ruby.scm (ruby-3.0): Update to 3.0.5.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-11-27 12:59:47 +02:00
49b4d4f708
gnu: ruby: Update to 2.7.7. [security fixes].
...
Fixes: CVE-2021-33621: HTTP response splitting in CGI.
* gnu/packages/ruby.scm (ruby-2.7-fixed): Update to 2.7.7.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-11-27 12:58:29 +02:00
9e4f89df57
gnu: yt-dlp: Update to 2022.11.11.
...
* gnu/packages/video.scm (yt-dlp): Update to 2022.11.11.
2022-11-27 12:53:03 +02:00
8485178e34
gnu: wgetpaste: Update to 2.33.
...
* gnu/packages/wget.scm (wgetpaste): Update to 2.33.
2022-11-27 12:47:40 +02:00
ac8de9eb7e
gnu: vim: Update to 9.0.0954.
...
* gnu/packages/vim.scm (vim): Update to 9.0.0954.
2022-11-27 12:47:39 +02:00
004afd079b
gnu: mg: Update to 20221112.
...
* gnu/packages/text-editors.scm (mg): Update to 20221112.
2022-11-27 12:47:39 +02:00
266c918263
gnu: flatpak: Update to 1.14.1.
...
* gnu/packages/package-management.scm (flatpak): Update to 1.14.1.
2022-11-27 12:47:39 +02:00
de32c09563
gnu: btrfs-progs: Update to 6.0.2.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 6.0.2.
2022-11-27 12:47:34 +02:00
7f9a2930bf
gnu: ardour: Update to 7.1
...
* gnu/packages/audio.scm (ardour): Update to 7.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-27 00:24:56 +01:00
fb2aafa127
gnu: emacs-lpy: Update to fa95b11.
...
* gnu/packages/emacs-xyz.scm (emacs-lpy): Update to fa95b11.
[propagated-inputs]: Add EMACS-FUNCTION-ARGS.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-27 00:16:43 +01:00
1b6bb4783c
gnu: Add emacs-function-args.
...
* gnu/packages/emacs-xyz.scm (emacs-function-args): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-27 00:16:43 +01:00
77d249aa10
gnu: Add emacs-org-rainbow-tags.
...
* gnu/packages/emacs-xyz.scm (emacs-org-rainbow-tags): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-27 00:16:42 +01:00
ae1efb41b8
gnu: lagrange: Update to 1.14.1.
...
* gnu/packages/web-browsers.scm (lagrange): Update to 1.14.1.
2022-11-27 00:16:42 +01:00
89c385faef
gnu: emacs-paredit: Update to 26.
...
* gnu/packages/emacs-xyz.scm (emacs-paredit): Update to 26.
2022-11-27 00:16:42 +01:00
68925b5ee7
gnu: libreoffice: Build reproducibly.
...
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Include ‘.otp’
files in the 'reset-zip-timestamps phase.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-11-20 01:00:05 +01:00
536adbd7cc
gnu: libreoffice: Fix build on i686-linux.
...
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Add
"--enable-lto" and "--without-galleries" #:configure-flags.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-11-20 01:00:00 +01:00
bc9234a8f8
gnu: linux-libre 4.9: Update to 4.9.334.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.334.
(linux-libre-4.9-pristine-source): Update hash.
2022-11-26 14:20:53 -05:00
330dca4a35
gnu: linux-libre 4.14: Update to 4.14.300.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.300.
(linux-libre-4.14-pristine-source): Update hash.
2022-11-26 14:20:52 -05:00
4a4e6d932f
gnu: linux-libre 4.19: Update to 4.19.267.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.267.
(linux-libre-4.19-pristine-source, deblob-scripts-4.19): Update hashes.
2022-11-26 14:20:52 -05:00
29fbc55f11
gnu: linux-libre 5.4: Update to 5.4.225.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.225.
(linux-libre-5.4-pristine-source, deblob-scripst-5.4): Update hashes.
2022-11-26 14:20:52 -05:00
319fa83dc9
gnu: linux-libre 5.10: Update to 5.10.156.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.156.
(linux-libre-5.10-pristine-source): Update hash.
2022-11-26 14:20:52 -05:00
241c89dc31
gnu: linux-libre 5.15: Update to 5.15.80.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.80.
(linux-libre-5.15-pristine-source): Update hash.
2022-11-26 14:20:51 -05:00
bfb64adb66
gnu: linux-libre: Update to 6.0.10.
...
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.10.
(linux-libre-6.0-pristine-source): Update hash.
2022-11-26 14:20:46 -05:00
c457c715a8
gnu: cdogs-sdl: Update to 1.4.0.
...
* gnu/packages/games.scm (cdogs-sdl): Update to 1.4.0.
2022-11-26 15:37:45 +01:00
ac5b6006cf
gnu: varnish: Update to 7.2.1.
...
* gnu/packages/web.scm (varnish): Update to 7.2.1.
2022-11-26 15:03:55 +01:00
2404afea8b
gnu: Add cryptominisat.
...
* gnu/packages/maths.scm (cryptominisat): New variable.
Co-authored-by: Maximilian Heisinger <mail@maxheisinger.at>
2022-11-26 14:03:53 +01:00
d3ce4a2619
gnu: Add louvain-community.
...
* gnu/packages/maths.scm (louvain-community): New variable.
2022-11-26 14:03:53 +01:00
58c24ec748
gnu: Add lingeling.
...
* gnu/packages/maths.scm (lingeling): New variable.
2022-11-26 14:03:53 +01:00
fc061ce297
gnu: Add aiger.
...
* gnu/packages/maths.scm (aiger): New variable.
2022-11-26 14:03:53 +01:00
ca98b3ab26
gnu: gst-plugins-bad: Skip elements/camerabin test on some systems.
...
It seems to frequently fail on i686-linux and aarch64-linux.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Skip the
elements/camerabin test on i686-linux and aarch64-linux.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-11-26 13:48:26 +01:00
5ccb5837cc
gnu: cbqn-bootstrap: Update to 0-2.66584ce.
...
* gnu/packages/bqn.scm (cbqn-bootstrap): Update to 0-2.66584ce.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-11-26 13:39:43 +01:00
e1f8802dc1
gnu: bqn-sources: Update to commit 71ce3614...
...
* gnu/packages/bqn.scm (bqn-sources): Update to commit
71ce36141aaacfa714edca2e408ca522a3bc5554.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-11-26 13:36:46 +01:00
6c6cc42f0a
gnu: emacs-rec-mode: Patch executable paths.
...
* gnu/packages/databases.scm (emacs-rec-mode)[#:phases]: Add
‘patch-program-paths’.
[inputs]: Add recutils.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-11-26 13:26:37 +01:00
2f0f12933f
gnu: emacs-rec-mode: Use modern package style
...
* gnu/packages/databases.scm (emacs-rec-mode)[source]<snippet>: Use
G-Expression.
[arguments]: Convert to list of G-Expressions.
[native-inputs]: Drop gratuitous newline.
2022-11-26 13:21:39 +01:00
adf3eeceda
gnu: lagrange: Update to 1.14.0.
...
* gnu/packages/web-browsers.scm (lagrange): Update to 1.14.0.
2022-11-26 12:10:10 +01:00
c91712aebc
gnu: Add mogan.
...
* gnu/packages/text-editors.scm (mogan): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-26 11:59:28 +01:00
920e809312
gnu: emacs-straight-el: Update to commit f21103d97d18.
...
* gnu/packages/emacs-xyz.scm (emacs-straight-el): Update to commit
f21103d97d18.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-26 11:53:56 +01:00
fdad266577
gnu: emacs-ebuku: Update to commit 0c6cf404a49b.
...
* gnu/packages/emacs-xyz.scm (emacs-ebuku): Update to commit 0c6cf404a49b.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-26 11:53:23 +01:00
d223aff97d
gnu: emacs-detached: Update to 0.10.1.
...
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.10.1.
2022-11-26 11:15:40 +01:00
203fe108b5
gnu: emacs-kind-icon: Update to 0.1.9.
...
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.1.9.
[description]: Use proper Texinfo marker. Remove useless "etc.".
2022-11-26 11:15:39 +01:00
86e47b5ee9
gnu: emacs-xref: Update to 1.6.0.
...
* gnu/packages/emacs-xyz.scm (emacs-xref): Update to 1.6.0.
2022-11-26 11:15:39 +01:00
bd6de843e6
gnu: emacs-paredit: Update to 25.
...
* gnu/packages/emacs-xyz.scm (emacs-paredit): Update to 25.
[description]: Remove out of place emphasis markers.
2022-11-26 11:15:39 +01:00
afa5fa8d5b
gnu: Add xkcdpass.
...
* gnu/packages/password-utils.scm (xkcdpass): New variable.
Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2022-11-26 09:21:10 +01:00
7e0ad0dd0f
gnu: docker: Fix tests.
...
Fixes <https://issues.guix.gnu.org/59551 >.
Reported by Edison Ibáñez <arkhan@riseup.net>
* gnu/packages/linux.scm (xfsprogs-5.9): New variable.
* gnu/packages/docker.scm (docker)[inputs]: Replace xfsprogs by xfsprogs-5.9.
2022-11-25 14:46:15 +01:00
78ee6dcfe1
gnu: Add python-sunpy.
...
* gnu/packages/astronomy.scm (python-sunpy): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-25 10:51:52 +00:00
a3d85918f9
gnu: Add python-reproject.
...
* gnu/packages/astronomy.scm (python-reproject): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-25 10:51:52 +00:00
0575012803
gnu: Add python-hvpy.
...
* gnu/packages/astronomy.scm (python-hvpy): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-25 10:51:52 +00:00
0458cbd84c
gnu: Add python-mpl-animators.
...
* gnu/packages/astronomy.scm (python-mpl-animators): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-25 10:51:52 +00:00
3271fa1f40
gnu: Add python-drms.
...
* gnu/packages/astronomy.scm (python-drms): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-25 10:51:52 +00:00
6827d76d38
gnu: Add portfolio.
...
* gnu/packages/gnome-xyz.scm (portfolio): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-25 10:51:52 +00:00
123e6f5f24
gnu: Add raider.
...
* gnu/packages/gnome.scm (raider): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-25 10:51:51 +00:00
b095dac8e0
gnu: Add r-btools.
...
* gnu/packages/bioinformatics.scm (r-btools): New variable.
2022-11-25 11:17:56 +01:00
79e40b6ce8
gnu: bitcoin-core: Update to 23.0.
...
According to <https://bitcoincore.org/en/lifecycle/#schedule >, versions 0.20
and 0.21 have passed end of life.
* gnu/packages/finance.scm (bitcoin-core): Update to 23.0.
(bitcoin-core-23.0): New variable.
(bitcoin-core-0.20, bitcoin-core-0.21): Remove variables.
2022-11-25 10:52:16 +01:00
d0b4baf51f
gnu: Add cl-system-load.
...
* gnu/packages/lisp-xyz.scm (sbcl-system-load, cl-system-load,
ecl-system-load): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-25 10:28:29 +01:00
13eafd6730
gnu: Add cl-file-notify.
...
* gnu/packages/lisp-xyz.scm (sbcl-file-notify, cl-file-notify,
ecl-file-notify): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-25 10:25:49 +01:00
5c93d51366
gnu: Add cl-marray.
...
* gnu/packages/lisp-xyz.scm (sbcl-marray, cl-marray): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-25 10:23:39 +01:00
fe09d32e34
gnu: Add cl-atomichron.
...
* gnu/packages/lisp-xyz.scm (sbcl-atomichron, cl-atomichron,
ecl-atomichron): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-25 10:15:55 +01:00
63374ef9b9
gnu: Add cl-concurrent-hash-tables.
...
* gnu/packages/lisp-xyz.scm (sbcl-concurrent-hash-tables,
cl-concurrent-hash-tables, ecl-concurrent-hash-tables): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-25 10:12:05 +01:00
045b868261
gnu: electrum: Update to 4.3.2.
...
* gnu/packages/finance.scm (electrum): Update to 4.3.2.
2022-11-25 10:03:39 +01:00
753a88c980
gnu: electron-cash: Update to 4.2.12.
...
* gnu/packages/finance.scm (electron-cash): Update to 4.2.12.
2022-11-25 09:58:51 +01:00
4777c104be
gnu: xmrig: Update to 6.18.1.
...
* gnu/packages/finance.scm (xmrig): Update to 6.18.1.
2022-11-25 09:54:08 +01:00
77fe40060d
gnu: p2pool: Update to 2.5.
...
* gnu/packages/finance.scm (p2pool): Update to 2.5.
2022-11-25 09:51:46 +01:00
5eb2995c00
gnu: emacs-popon: Update to 0.12.
...
* gnu/packages/emacs-xyz.scm (emacs-popon): Update to 0.12.
2022-11-24 23:47:32 +01:00
94907932b8
gnu: emacs-flymake-mypy: Update to 0.3.0.
...
* gnu/packages/emacs-xyz.scm (emacs-flymake-mypy): Update to 0.3.0.
2022-11-24 23:45:05 +01:00
d858714ffc
gnu: burgerspace: Update to 1.9.5.
...
* gnu/packages/games.scm (burgerspace): Update to 1.9.5.
2022-11-24 23:36:03 +01:00
fa5701964d
gnu: emacs-inspector: Activate tests.
...
* gnu/packages/emacs-xyz.scm (emacs-inspector)[arguments]: Add tests. Skip
failing test. Fix compatibility with Emacs 28 and older.
2022-11-24 23:30:57 +01:00
84136e95b2
gnu: emacs-inspector: Fix base version.
...
* gnu/packages/emacs-xyz.scm (emacs-inspector)[version]: Use "0.8" as base
version, which is the version from "inspector.el" instead of
"tree-inspector.el".
2022-11-24 23:30:56 +01:00
82c43b276d
gnu: linux-libre: Enable building info doc.
...
* gnu/packages/patches/linux-libre-infodocs-target.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (linux-libre-6.0-source, linux-libre-5.15-source)
(linux-libre-5.10-source): Apply above patch.
(doc-supported?): New procedure.
(make-linux-libre) [DOC-SUPPORTED?]: Add new patch in
the default patches used. Add a BUILD-DOC? argument.
(make-linux-libre*): Add a BUILD-DOC? argument. Validate BUILD-DOC? for
supported VERSION.
[arguments]: Conditionally add the build-doc and install-doc phases.
[native-inputs]: Conditionally add fontconfig, graphviz, python-wrapper,
python-sphinx, texinfo and which.
2022-11-24 16:35:11 -05:00
5f8c11d48e
gnu: emacs-s: Do not use full-fledged Emacs to run tests.
...
* gnu/packages/emacs-xyz.scm (emacs-s)[arguments]: Use emacs-minimal.
2022-11-24 22:32:53 +01:00
b3beeaa309
gnu: arm-trusted-firmware: Remove blobs in a snippet.
...
* gnu/packages/firmware.scm (make-arm-trusted-firmware)[source]: Add
snippet to remove binary blobs.
[arguments]: Remove related phase.
2022-11-24 22:22:39 +02:00
255450bed2
gnu: arm-trusted-firmware: Update to 2.8.
...
* gnu/packages/firmware.scm (make-arm-trusted-firmware): Update to 2.8.
[arguments]: Remove trailing #t from phases. Clean up regexes.
2022-11-24 22:22:38 +02:00
564dcaa1fa
gnu: python-brotlicffi: Unbundle brotli.
...
* gnu/packages/python-compression.scm (python-brotlicffi)[source]: Add
snippet to delete bundled libbrotli.
[arguments]: Add phase to configure using shared libbrotli.
[inputs]: Add brotli.
2022-11-24 22:22:32 +02:00
4c9e94a453
gnu: Add qt-creator.
...
* gnu/packages/qt.scm (qt-creator): New variable.
wip
2022-11-24 14:55:57 -05:00
085831010c
gnu: qttools: Add clang-15 as input.
...
* gnu/packages/qt.scm (qttools) [inputs]: Add clang-15, so that the qdoc
command can be built.
[phases] {sanity-check}: New phase, to guard against a problem that proved
difficult to isolate.
2022-11-24 14:55:57 -05:00
d1dc2c47fe
gnu: Add clazy.
...
* gnu/packages/qt.scm (clazy): New variable.
2022-11-24 14:55:57 -05:00
9381e14536
gnu: Add qttranslations.
...
* gnu/packages/qt.scm (qttranslations): New variable.
2022-11-24 14:52:56 -05:00
8f3e10ae81
gnu: emacs-projectile: Activate tests.
...
* gnu/packages/emacs-xyz.scm (emacs-projectile)[source]: Use Git repository
instead of released tarball to get the test file.
[arguments]: Activate tests, and fix a failing one.
2022-11-24 18:06:33 +01:00
b438e1f231
gnu: emacs-projectile: Improve description.
...
* gnu/packages/emacs-xyz.scm (emacs-projectile)[description]: Use proper
capitalization, expand some words, add Texinfo markup, remove fancy typography.
2022-11-24 18:05:41 +01:00
826d862eb3
gnu: emacs-projectile: Update to 2.7.0.
...
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.7.0.
2022-11-24 18:05:41 +01:00
071d0cac80
gnu: emacs-kind-icon: Update to 0.1.8.
...
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.1.8.
2022-11-24 18:05:40 +01:00
95aa64e9fe
gnu: emacs-vertico: Update to 0.29.
...
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.29.
2022-11-24 18:05:40 +01:00
49cfa7d8bd
gnu: emacs-eldev: Update to 1.3.
...
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.3.
2022-11-24 18:05:40 +01:00
b8eb99f817
gnu: emacs-detached: Update to 0.10.0.
...
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.10.0.
2022-11-24 18:05:39 +01:00
3174c4c17d
gnu: emacs-org-modern: Update to 0.6.
...
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.6.
2022-11-24 18:05:39 +01:00
c29d999a34
gnu: r-ancombc: Update to 2.0.1.
...
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1.
[propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add r-cvxr, r-emmeans,
r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors,
r-singlecellexperiment, r-summarizedexperiment, and
r-treesummarizedexperiment.
2022-11-24 18:02:15 +01:00
139da51753
gnu: Add r-mia.
...
* gnu/packages/bioconductor.scm (r-mia): New variable.
2022-11-24 18:02:15 +01:00
90d8ac279f
gnu: Add r-treesummarizedexperiment.
...
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable.
2022-11-24 18:02:15 +01:00
efb965a4fa
gnu: Add r-cvxr.
...
* gnu/packages/cran.scm (r-cvxr): New variable.
2022-11-24 18:02:15 +01:00
bde758150f
gnu: Add r-ecosolver.
...
* gnu/packages/cran.scm (r-ecosolver): New variable.
2022-11-24 18:02:15 +01:00
697a0f8ca4
gnu: Add r-scs.
...
* gnu/packages/cran.scm (r-scs): New variable.
2022-11-24 18:02:15 +01:00
8b1bee45f7
gnu: Add r-osqp.
...
* gnu/packages/cran.scm (r-osqp): New variable.
2022-11-24 18:02:15 +01:00
8d3bd8e4b0
gnu: Add r-ancombc.
...
* gnu/packages/bioconductor.scm (r-ancombc): New variable.
2022-11-24 18:02:15 +01:00
a8c36bf8c4
gnu: linux-libre 4.19: Update to 4.19.266.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.266.
(linux-libre-4.19-pristine-source): Update hash.
2022-11-24 11:25:51 -05:00
fa59a22140
gnu: r-aims: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-aims): Update to 1.30.0.
2022-11-24 15:36:18 +01:00
2e85d26ebb
gnu: Add r-aims.
...
* gnu/packages/bioconductor.scm (r-aims): New variable.
2022-11-24 15:35:38 +01:00
6f39e16124
gnu: r-alevinqc: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.14.0.
2022-11-24 15:28:15 +01:00
5dc82a7f8b
gnu: Add r-alevinqc.
...
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
2022-11-24 15:22:28 +01:00
610616d448
gnu: r-alphabeta: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.12.0.
2022-11-24 15:13:50 +01:00
6c7f0849c1
gnu: Add r-alphabeta.
...
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
2022-11-24 15:09:13 +01:00
c706a0a2af
gnu: r-asafe: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.24.0.
2022-11-24 15:02:41 +01:00
01124e5a10
gnu: Add r-asafe.
...
* gnu/packages/bioconductor.scm (r-asafe): New variable.
2022-11-24 15:02:10 +01:00
c2cba91ac9
gnu: r-arrayexpress: Update to 1.57.0.
...
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.57.0.
2022-11-24 14:54:41 +01:00
13e8930efb
gnu: Add r-arrayexpress.
...
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
2022-11-24 14:53:09 +01:00
f43a41d196
gnu: r-scuttle: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.1.
2022-11-24 12:32:11 +01:00
a2ad5b53bf
gnu: r-rgreat: Update to 2.0.2.
...
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.2.
2022-11-24 12:32:11 +01:00
8bfac375aa
gnu: r-bioccheck: Update to 1.34.2.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.2.
2022-11-24 12:32:11 +01:00
f9747ecc2c
gnu: r-dose: Update to 3.24.2.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.24.2.
2022-11-24 12:32:10 +01:00
a5ee462b7a
gnu: r-shortread: Update to 1.56.1.
...
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.56.1.
2022-11-24 12:32:10 +01:00
3bc54ddeab
gnu: r-chipseeker: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.1.
2022-11-24 12:32:10 +01:00
d3696e71a9
gnu: r-deconvr: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.2.
2022-11-24 12:32:10 +01:00
04340b27ba
gnu: r-bambu: Update to 3.0.2.
...
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2.
2022-11-24 12:32:10 +01:00
4c0449ba8f
gnu: r-minimal: Simplify build phase.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Simplify phase
"remove-extraneous-references".
2022-11-24 12:32:10 +01:00
a8082fefe0
gnu: r-minimal: Use %store-directory instead of /gnu/store.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Use %store-directory
instead of hard-coding "/gnu/store" prefix.
2022-11-24 12:32:10 +01:00
eeeca2341d
gnu: r-with-tests: Update to 4.2.2.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.2.
[arguments]: Patch DESCRIPTION file of "tools" package to avoid
non-deterministic line break.
2022-11-24 12:32:09 +01:00
ffe149ccc5
gnu: r-with-tests: Drop labels from input lists.
...
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Drop input
labels.
[inputs]: Same.
(r-minimal)[arguments]: Remove lookup of "texlive" package.
2022-11-24 12:32:09 +01:00
f3004710fa
gnu: r-ggtern: Update to 3.4.0.
...
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.0.
2022-11-24 12:32:09 +01:00
54afdb3de1
gnu: r-phyloseq: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.42.0.
2022-11-24 12:32:09 +01:00
9988c60ea3
gnu: r-tximeta: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.0.
2022-11-24 12:32:09 +01:00
5140be4c81
gnu: r-tricycle: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.6.0.
2022-11-24 12:32:09 +01:00
7a33311bfd
gnu: r-tcgabiolinks: Update to 2.25.3.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.25.3.
2022-11-24 12:32:09 +01:00
dde0da5a95
gnu: r-biscuiteer: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.12.0.
2022-11-24 12:32:09 +01:00
926fe78f73
gnu: r-omnipathr: Update to 3.5.25.
...
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.5.25.
[propagated-inputs]: Add r-rmarkdown and r-rvest.
2022-11-24 12:32:08 +01:00
3f58454739
gnu: r-omicade4: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.38.0.
2022-11-24 12:32:08 +01:00
e524c12e06
gnu: r-dmrseq: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.0.
2022-11-24 12:32:08 +01:00
95792cda89
gnu: r-dada2: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.26.0.
2022-11-24 12:32:08 +01:00
c2c91d9dfe
gnu: r-bsseq: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.34.0.
2022-11-24 12:32:08 +01:00
3b8df103f7
gnu: r-biotmle: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.22.0.
2022-11-24 12:32:08 +01:00
3ed0a63106
gnu: r-biotip: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.12.0.
2022-11-24 12:32:08 +01:00
f230df5f4f
gnu: r-bioqc: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.26.0.
2022-11-24 12:32:07 +01:00
219b98fee9
gnu: r-bionetstat: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.18.0.
2022-11-24 12:32:07 +01:00
01fb7c35e7
gnu: r-bionet: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.58.0.
2022-11-24 12:32:07 +01:00
1118d6e856
gnu: r-bionero: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.6.0.
2022-11-24 12:32:07 +01:00
858d9ccd9b
gnu: r-biomvrcns: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.38.0.
2022-11-24 12:32:07 +01:00
c0412736d8
gnu: r-biomvcclass: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.66.0.
2022-11-24 12:32:07 +01:00
3879ddbdb9
gnu: r-mvcclass: Update to 1.72.0.
...
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.72.0.
2022-11-24 12:32:07 +01:00
4875f37cb6
gnu: r-biomformat: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.26.0.
2022-11-24 12:32:06 +01:00
ffd5e53e87
gnu: r-biodb: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.6.0.
2022-11-24 12:32:06 +01:00
efc663040b
gnu: r-biocdockermanager: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.10.0.
2022-11-24 12:32:06 +01:00
4fcf1f08ec
gnu: r-biocthis: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.8.1.
2022-11-24 12:32:06 +01:00
3aea2c40d8
gnu: r-basilisk: Update to 1.10.2.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.10.2.
2022-11-24 12:32:06 +01:00
f5a514b605
gnu: r-basilisk-utils: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.10.0.
2022-11-24 12:32:06 +01:00
925642f837
gnu: r-dir-expiry: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.6.0.
2022-11-24 12:32:06 +01:00
727cd07d1a
gnu: r-genetclassifier: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.38.0.
2022-11-24 12:32:05 +01:00
dbaad2365a
gnu: r-minet: Update to 3.56.0.
...
* gnu/packages/bioconductor.scm (r-minet): Update to 3.56.0.
2022-11-24 12:32:05 +01:00
8ba466faff
gnu: r-biobtreer: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.10.0.
2022-11-24 12:32:05 +01:00
009ac4e3a9
gnu: r-bgeedb: Update to 2.24.0.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.24.0.
2022-11-24 12:32:05 +01:00
3912f43996
gnu: r-bgeecall: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.14.0.
2022-11-24 12:32:05 +01:00
81cea8424d
gnu: r-beclear: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.14.0.
[propagated-inputs]: Add r-ids.
2022-11-24 12:32:05 +01:00
5604f64c34
gnu: r-megadepth: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.8.0.
2022-11-24 12:32:05 +01:00
3823aa40a3
gnu: r-ballgown: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.30.0.
2022-11-24 12:32:04 +01:00
3ca58a4ff3
gnu: r-guitar: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.14.0.
2022-11-24 12:32:04 +01:00
5950a171ba
gnu: r-chromstar: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.24.0.
2022-11-24 12:32:04 +01:00
1ff0bc4e7b
gnu: r-snpstats: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.48.0.
2022-11-24 12:32:04 +01:00
ddc7edf0b3
gnu: r-pathview: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.38.0.
2022-11-24 12:32:04 +01:00
1315c532de
gnu: r-ldblock: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.28.0.
2022-11-24 12:32:04 +01:00
db290bf5b9
gnu: r-kegggraph: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.58.0.
2022-11-24 12:32:04 +01:00
b6e56ceeb9
gnu: r-gwascat: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.30.0.
2022-11-24 12:32:03 +01:00
5f3ff4f884
gnu: r-gviz: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.42.0.
2022-11-24 12:32:03 +01:00
34867ac9cf
gnu: r-ggbio: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.46.0.
2022-11-24 12:32:03 +01:00
77f2aa3fa4
gnu: r-erma: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-erma): Update to 1.14.0.
2022-11-24 12:32:03 +01:00
dbeb05e6a3
gnu: r-catalyst: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.22.0.
2022-11-24 12:32:03 +01:00
01e78296bc
gnu: r-msmstests: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.36.0.
2022-11-24 12:32:03 +01:00
5c6c7831d6
gnu: r-msmseda: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.36.0.
2022-11-24 12:32:03 +01:00
94a86e7e39
gnu: r-biocio: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.8.0.
2022-11-24 12:32:02 +01:00
0640f750b4
gnu: r-msfeatures: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.6.0.
2022-11-24 12:32:02 +01:00
b5a0d81448
gnu: r-mscoreutils: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.10.0.
2022-11-24 12:32:02 +01:00
377a9b2177
gnu: r-delayedmatrixstats: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.20.0.
2022-11-24 12:32:02 +01:00
2dc26068eb
gnu: r-sparsematrixstats: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.10.0.
2022-11-24 12:32:02 +01:00
c73d3e9bad
gnu: r-scran: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.26.0.
2022-11-24 12:32:02 +01:00
14e3905c6e
gnu: r-scater: Update to 1.26.1.
...
* gnu/packages/bioconductor.scm (r-scater): Update to 1.26.1.
[propagated-inputs]: Add r-ggrastr, r-pheatmap, and r-uwot.
2022-11-24 12:32:02 +01:00
3fa18b5504
gnu: r-scuttle: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.0.
2022-11-24 12:32:01 +01:00
54a67ddf86
gnu: r-singler: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-singler): Update to 2.0.0.
2022-11-24 12:32:01 +01:00
d748ae3d00
gnu: r-singlecellexperiment: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.20.0.
2022-11-24 12:32:01 +01:00
64ccd0ff3c
gnu: r-chromvar: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.0.
2022-11-24 12:32:01 +01:00
5374b55b68
gnu: r-motifmatchr: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.20.0.
2022-11-24 12:32:01 +01:00
8b332d676d
gnu: r-maftools: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.14.0.
2022-11-24 12:32:01 +01:00
21b32e45bd
gnu: r-tfbstools: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.36.0.
2022-11-24 12:32:00 +01:00
6dc8ec0358
gnu: r-cner: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-cner): Update to 1.34.0.
2022-11-24 12:32:00 +01:00
6dfa3f50b9
gnu: r-beachmat: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.14.0.
2022-11-24 12:32:00 +01:00
2a5fb31db9
gnu: r-rhdf5lib: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.20.0.
2022-11-24 12:32:00 +01:00
9e45f2c183
gnu: r-hdf5array: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.26.0.
2022-11-24 12:32:00 +01:00
ab92277de4
gnu: r-hitc: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.42.0.
2022-11-24 12:32:00 +01:00
06c18fde52
gnu: r-fithic: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.24.0.
2022-11-24 12:31:59 +01:00
65866be416
gnu: r-fishpond: Update to 2.4.0.
...
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.4.0.
2022-11-24 12:31:59 +01:00
f074346f2c
gnu: r-rgraphviz: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.42.0.
2022-11-24 12:31:59 +01:00
96cd3b4bcf
gnu: r-s4vectors: Update to 0.36.0.
...
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.0.
2022-11-24 12:31:59 +01:00
4737a25691
gnu: r-preprocesscore: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.60.0.
2022-11-24 12:31:59 +01:00
a02007bd88
gnu: r-icens: Update to 1.70.0.
...
* gnu/packages/bioconductor.scm (r-icens): Update to 1.70.0.
2022-11-24 12:31:59 +01:00
79c096cb2e
gnu: r-m3c: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.20.0.
2022-11-24 12:31:59 +01:00
c705fcaaa5
gnu: r-rgreat: Update to 2.0.1.
...
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.1.
[propagated-inputs]: Add r-annotationdbi, r-circlize, r-digest, r-doparallel,
r-dt, r-foreach, r-genomeinfodb, r-genomicfeatures, r-globaloptions, r-go-db,
r-org-hs-eg-db, r-progress, r-rcolorbrewer, r-rcpp, r-s4vectors, r-shiny,
r-txdb-hsapiens-ucsc-hg19-knowngene, and r-txdb-hsapiens-ucsc-hg38-knowngene.
2022-11-24 12:31:59 +01:00
4f3b6abb5f
gnu: r-pcatools: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.10.0.
2022-11-24 12:31:58 +01:00
29c12faa87
gnu: r-biodist: Update to 1.70.0.
...
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.70.0.
2022-11-24 12:31:58 +01:00
3e451b9415
gnu: r-biocworkflowtools: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.24.0.
2022-11-24 12:31:58 +01:00
ec4583b1d2
gnu: r-biocset: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.12.0.
2022-11-24 12:31:58 +01:00
c1cff36f4c
gnu: r-biocpkgtools: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.0.
[propagated-inputs]: Remove r-tidyr and r-tidyselect. Add r-rorcid.
2022-11-24 12:31:58 +01:00
1a19353ae1
gnu: r-biocor: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.22.0.
2022-11-24 12:31:58 +01:00
1eaf500dd6
gnu: r-bioconcotk: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.18.0.
2022-11-24 12:31:58 +01:00
5557dea898
gnu: r-multiassayexperiment: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.24.0.
[propagated-inputs]: Add r-biocbaseutils and r-delayedarray.
2022-11-24 12:31:57 +01:00
(unmatched-parenthesis
Remco van 't Veer
Efraim Flashner
Sughosha via Guix-patches via
jgart
Nicolas Goaziou
Kaelyn
Leo Famulari
Marius Bakke
Liliana Marie Prikler
Christopher Baines
aecepoglu
Zhu Zihao
Antero Mejr
Danny Milosavljevic
Sharlatan Hellseher
conses
Ahriman
Navid Afkhami
Guillaume Le Vaillant
Paul A. Patience
Maxim Cournoyer
Ricardo Wurmus
Mădălin Ionel Patrașcu
zimoun