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66844 Commits (5f299b4a31550155508ce4e10d66cdfbb1a65bdd)

Author SHA1 Message Date
Ricardo Wurmus 744190fe45
gnu: r-ggraph: Update to 2.0.5.
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.5.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus df20df3512
gnu: r-ggforce: Update to 0.3.3.
* gnu/packages/cran.scm (r-ggforce): Update to 0.3.3.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus a5cfb3f330
gnu: r-farver: Update to 2.1.0.
* gnu/packages/cran.scm (r-farver): Update to 2.1.0.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus b96724c423
gnu: r-arsenal: Update to 3.6.2.
* gnu/packages/cran.scm (r-arsenal): Update to 3.6.2.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus ab8c8693c1
gnu: r-genetics: Update to 1.3.8.1.3.
* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.3.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 5a3996538c
gnu: r-deldir: Update to 0.2-10.
* gnu/packages/cran.scm (r-deldir): Update to 0.2-10.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 8c866232e1
gnu: r-units: Update to 0.7-0.
* gnu/packages/cran.scm (r-units): Update to 0.7-0.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus a9ab876114
gnu: r-gamlss-dist: Update to 5.3-2.
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.3-2.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 34471fa1b2
gnu: r-shinyjqui: Update to 0.4.0.
* gnu/packages/cran.scm (r-shinyjqui): Update to 0.4.0.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 089a3a7fcd
gnu: r-epi: Update to 2.44.
* gnu/packages/cran.scm (r-epi): Update to 2.44.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 690940cc53
gnu: r-dotcall64: Update to 1.0-1.
* gnu/packages/cran.scm (r-dotcall64): Update to 1.0-1.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus b63f13b59f
gnu: r-gargle: Update to 1.0.0.
* gnu/packages/cran.scm (r-gargle): Update to 1.0.0.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 1443bb0f19
gnu: r-tiff: Update to 0.1-7.
* gnu/packages/cran.scm (r-tiff): Update to 0.1-7.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus cf1ef75cc4
gnu: r-fftwtools: Update to 0.9-11.
* gnu/packages/cran.scm (r-fftwtools): Update to 0.9-11.
[native-inputs]: Add pkg-config.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 7fab62cecb
gnu: r-ouch: Update to 2.15-1.
* gnu/packages/cran.scm (r-ouch): Update to 2.15-1.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 1ef3abaff3
gnu: r-activity: Update to 1.3.1.
* gnu/packages/cran.scm (r-activity): Update to 1.3.1.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 1b9009ce98
gnu: r-rgl: Update to 0.105.22.
* gnu/packages/cran.scm (r-rgl): Update to 0.105.22.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus ed7f3e3c2f
gnu: r-rcppparallel: Update to 5.0.3.
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.3.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 7db329a300
gnu: r-mvabund: Update to 4.1.9.
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.9.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 70d490eb73
gnu: r-gert: Update to 1.2.0.
* gnu/packages/cran.scm (r-gert): Update to 1.2.0.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 4c113c54f1
gnu: r-labelled: Update to 2.8.0.
* gnu/packages/cran.scm (r-labelled): Update to 2.8.0.
[propagated-inputs]: Remove r-pillar; add r-stringr.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 2dae640d8a
gnu: r-doby: Update to 4.6.9.
* gnu/packages/cran.scm (r-doby): Update to 4.6.9.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus c1037edc89
gnu: r-deriv: Update to 4.1.3.
* gnu/packages/cran.scm (r-deriv): Update to 4.1.3.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 111400674f
gnu: r-insight: Update to 0.13.1.
* gnu/packages/cran.scm (r-insight): Update to 0.13.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus ad037d6ecb
gnu: r-officer: Update to 0.3.17.
* gnu/packages/cran.scm (r-officer): Update to 0.3.17.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 0281b306ca
gnu: r-rdpack: Update to 2.1.1.
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.1.
[propagated-inputs]: Remove r-gbrd.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus fdf375346a
gnu: r-rstatix: Update to 0.7.0.
* gnu/packages/cran.scm (r-rstatix): Update to 0.7.0.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus b6d9965d41
gnu: r-ggsignif: Update to 0.6.1.
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 2c49fe4063
gnu: r-renv: Update to 0.13.0.
* gnu/packages/cran.scm (r-renv): Update to 0.13.0.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus b592c4dbe6
gnu: r-rastervis: Update to 0.50.
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.
[propagated-inputs]: Add r-terra.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 9d9d11b5d3
gnu: r-promises: Update to 1.2.0.1.
* gnu/packages/cran.scm (r-promises): Update to 1.2.0.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 0505facdd5
gnu: r-rio: Update to 0.5.26.
* gnu/packages/cran.scm (r-rio): Update to 0.5.26.
[native-inputs]: Add r-knitr.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 1774703383
gnu: r-tinytex: Update to 0.30.
* gnu/packages/cran.scm (r-tinytex): Update to 0.30.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus bd1ff10ea0
gnu: r-pillar: Update to 1.5.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.5.1.
[native-inputs]: Add r-knitr.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 6fe7e138b9
gnu: r-argparser: Update to 0.7.1.
* gnu/packages/cran.scm (r-argparser): Update to 0.7.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 5136cc1306
gnu: r-cli: Update to 2.3.1.
* gnu/packages/cran.scm (r-cli): Update to 2.3.1.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 0496ce3c44
gnu: r-broom: Update to 0.7.5.
* gnu/packages/cran.scm (r-broom): Update to 0.7.5.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 6c7d9efdd8
gnu: r-ipred: Update to 0.9-10.
* gnu/packages/cran.scm (r-ipred): Update to 0.9-10.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus b3700e61d4
gnu: r-energy: Update to 1.7-8.
* gnu/packages/cran.scm (r-energy): Update to 1.7-8.
[propagated-inputs]: Add r-gsl.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 37097b923c
gnu: r-rmpi: Update to 0.6-9.1.
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.1.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 4fcbe65d61
gnu: r-proxy: Update to 0.4-25.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-25.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus adbd713085
gnu: r-ggally: Update to 2.1.1.
* gnu/packages/cran.scm (r-ggally): Update to 2.1.1.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 7ff93d3483
gnu: r-ffbase: Update to 0.13.3.
* gnu/packages/cran.scm (r-ffbase): Update to 0.13.3.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 84e39b3d99
gnu: r-pkgload: Update to 1.2.0.
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.0.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 601a112bb2
gnu: r-ps: Update to 1.6.0.
* gnu/packages/cran.scm (r-ps): Update to 1.6.0.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus f0f2e2cbda
gnu: r-partykit: Update to 1.2-13.
* gnu/packages/cran.scm (r-partykit): Update to 1.2-13.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus fa00e35b9e
gnu: r-rticles: Update to 0.19.
* gnu/packages/cran.scm (r-rticles): Update to 0.19.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 260259f5ef
gnu: r-waldo: Update to 0.2.5.
* gnu/packages/cran.scm (r-waldo): Update to 0.2.5.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 4be2e0f309
gnu: r-cachem: Update to 1.0.4.
* gnu/packages/cran.scm (r-cachem): Update to 1.0.4.
2021-03-09 22:05:24 +01:00
Ricardo Wurmus ef8e4f4172
gnu: r-wgcna: Update to 1.70-3.
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.70-3.
2021-03-09 22:05:24 +01:00
Ricardo Wurmus 7fffee5e34
gnu: Add r-terra.
* gnu/packages/cran.scm (r-terra): New variable.
2021-03-09 22:05:24 +01:00
Ricardo Wurmus 1bbf632574
gnu: Add r-ggtext.
* gnu/packages/cran.scm (r-ggtext): New variable.
2021-03-09 22:05:24 +01:00
Ricardo Wurmus c341a4d02e
gnu: Add r-gridtext.
* gnu/packages/cran.scm (r-gridtext): New variable.
2021-03-09 22:05:24 +01:00
Ricardo Wurmus 91aa72bfe2
gnu: Add r-palmerpenguins.
* gnu/packages/cran.scm (r-palmerpenguins): New variable.
2021-03-09 22:05:24 +01:00
Ricardo Wurmus bcdf0cf3a5
gnu: Add r-rstpm2.
* gnu/packages/cran.scm (r-rstpm2): New variable.
2021-03-09 22:05:24 +01:00
Ricardo Wurmus 3c04e179b7
gnu: Add r-fastghquad.
* gnu/packages/cran.scm (r-fastghquad): New variable.
2021-03-09 22:05:24 +01:00
Efraim Flashner 80c83756e9
gnu: evisum: Update to 0.5.11.
* gnu/packages/enlightenment.scm (evisum): Update to 0.5.11.
2021-03-09 22:59:20 +02:00
Felix Gruber 251b0f7a6f
gnu: vtk: Fix build failure.
* gnu/packages/image-processing.scm (vtk): Fix build failure.
[source]: Add patch to fix build failure with recent versions of freetype.
* gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-09 22:32:41 +02:00
Efraim Flashner 5b74e21e12
gnu: ruby-pstree: Update to 0.3.0.
* gnu/packages/ruby.scm (ruby-pstree): Update to 0.3.0.
2021-03-09 22:27:39 +02:00
Nicolas Goaziou d019bce1a3
gnu: emacs-php-mode: Update to 1.24.0.
* gnu/packages/emacs-xyz.scm (emacs-php-mode): Update to 1.24.0.
[arguments]: Include "lisp/" directory, and add it to load path before byte-compiling.
2021-03-09 21:08:36 +01:00
Raghav Gururajan eb4ed63fc4
gnu: Rename "t" to "t-todo-manager".
* gnu/packages/task-management.scm (t): Rename to t-todo-manager.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-09 18:45:51 +01:00
Ludovic Courtès b1cabedd28
gnu: xvfb-run: Fix syntax error.
Error introduced in 07f77812c4.

* gnu/packages/xorg.scm (xvfb-run)[license]: Fix syntax.
2021-03-09 16:17:56 +01:00
Ludovic Courtès 973c6f18eb
gnu: guile-next: Reintroduce as a 3.0.x snapshot.
* gnu/packages/guile.scm (guile-next): Rewrite as a 3.0.x snapshot.
2021-03-09 16:16:05 +01:00
Tobias Geerinckx-Rice 07f77812c4
gnu: xvfb-run: Add man page licence.
* gnu/packages/xorg.scm (xvfb-run)[license]: Add gpl2+.
2021-03-09 15:29:08 +01:00
Tobias Geerinckx-Rice 35d9d5bfa6
gnu: s-tui: Update to 1.1.1.
* gnu/packages/admin.scm (s-tui): Update to 1.1.1.
2021-03-09 15:24:51 +01:00
Tobias Geerinckx-Rice 77077d90cd
gnu: inxi-minimal: Update to 3.3.01-1.
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.01-1.
2021-03-09 15:24:51 +01:00
Tobias Geerinckx-Rice 1e4b80ad65
gnu: sigrok-cli: Update to 0.7.2.
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.2.
2021-03-09 15:24:51 +01:00
Tobias Geerinckx-Rice 2e6d40b373
gnu: lrzip: Update to 0.641.
* gnu/packages/compression.scm (lrzip): Update to 0.641.
2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 4685a468f8
gnu: libime: Update to 1.0.4.
* gnu/packages/fcitx5.scm (libime): Update to 1.0.4.
2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 362d478746
gnu: libfastjson: Update to 0.99.9.
* gnu/packages/c.scm (libfastjson): Update to 0.99.9.
2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 5a948f3142
gnu: progress: Update to 0.16.
* gnu/packages/admin.scm (progress): Update to 0.16.
2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 9f87758fd5
gnu: Add xvfb-run.
* gnu/packages/xorg.scm (xvfb-run): New public variable.
2021-03-09 15:24:49 +01:00
Tobias Geerinckx-Rice 4c6fa85136
gnu: ppsspp: Update to 1.11.3.
* gnu/packages/emulators.scm (ppsspp): Update to 1.11.3.
2021-03-09 15:24:49 +01:00
Tobias Geerinckx-Rice 17db882d29
gnu: solaar: Fix home page.
* gnu/packages/admin.scm (solaar)[home-page]: Correct.
2021-03-09 15:24:49 +01:00
Tobias Geerinckx-Rice de1f866465
gnu: solaar: Update to 1.0.5.
* gnu/packages/admin.scm (solaar): Update to 1.0.5.
2021-03-09 15:24:49 +01:00
Efraim Flashner d90165826c
gnu: solfege: Build with older texinfo.
The package failed to build with texinfo-6.7.

* gnu/packages/music.scm (solfege)[native-inputs]: Replace texinfo with
texinfo-5.
2021-03-09 16:13:18 +02:00
Efraim Flashner c3fb753045
gnu: python-logwrap: Update to 8.2.0.post0.
* gnu/packages/python-xyz.scm (python-logwrap): Update to 8.2.0.post0.
[arguments]: Disable tests. Replace 'check phase.
[propagated-inputs]: Remove python-six, python-typing.
[native-inputs]: Remove unzip, python-pytest-cov, python-pytest-runner.
Add python-setuptools-scm, python-toml, python-wheel.
[home-page]: Update to new upstream URI.
2021-03-09 16:04:50 +02:00
Efraim Flashner 12640deb50
gnu: symengine: Fix build.
* gnu/packages/algebra.scm (symengine)[native-inputs]: Remove llvm.
[arguments]: Adjust accordingly.
2021-03-09 15:44:31 +02:00
Efraim Flashner 40b3e9da49
gnu: xygrib: Fix compiling with newer qt.
* gnu/packages/geo.scm (xygrib)[source]: Adjust snippet to add missing
include header.
2021-03-09 15:32:05 +02:00
Ricardo Wurmus 133a918923
gnu: trim-galore: Update to 0.6.6.
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.6.
2021-03-09 11:54:59 +01:00
Ricardo Wurmus 49d85b3f11
gnu: bbmap: Update to 38.90.
* gnu/packages/bioinformatics.scm (bbmap): Update to 38.90.
2021-03-09 11:54:59 +01:00
Christopher Baines a728889951
gnu: rust-1.26: Remove aarch64-linux from the supported systems.
Because this package is a transitive input to many rust packages, Cuirass is
spending lots of time failing to build it on ci.guix.gnu.org. This change will
hopefully help with that issue.

* gnu/packages/rust.scm (rust-1.26)[supported-systems]: Remove aarch64-linux.
2021-03-09 09:04:57 +00:00
Leo Famulari d099c9c09b
gnu: VLC: Ensure AV1 files are played with dav1d by default.
* gnu/packages/video.scm (vlc)[inputs]: Add dav1d.
2021-03-09 03:42:18 -05:00
Leo Famulari a7da527d59
gnu: Remove FFmpeg 4.2.
* gnu/packages/video.scm (ffmpeg-4.2): Remove variable.
2021-03-09 03:42:18 -05:00
Leo Famulari 0cac5f75ed
gnu: svt-vp9: Fix typo.
* gnu/packages/video.scm (svt-vp9): Fix typo in comment.
2021-03-09 03:42:18 -05:00
Leo Famulari 31dcf19ea3
gnu: libavif: Update to 0.9.0.
* gnu/packages/image.scm (libavif): Update to 0.9.0.
2021-03-09 03:42:18 -05:00
Leo Famulari 84c7099688
gnu: dav1d: Update to 0.8.2.
* gnu/packages/video.scm (dav1d): Update to 0.8.2.
2021-03-09 03:42:18 -05:00
Leo Famulari 0d9b7fd0c1
gnu: libaom: Update to 2.0.2.
* gnu/packages/video.scm (libaom): Update to 2.0.2.
2021-03-09 03:42:18 -05:00
Brice Waegeneire df138dc208
gnu: services: Add activate script to the profile system directory.
* gnu/services.scm (activation-profile-entry): New procedure...
(activation-service-type): ... use it.
2021-03-09 06:56:12 +01:00
Christopher Baines f5c6e6966c
gnu: rust-1.19: Don't include i686-linux in supported-systems.
Currently rust fails to build for i686-linux, so this will avoid computing
lots of derivations that depend on rust, but won't be possible to build.

* gnu/packages/rust.scm (rust-1.19)[supported-systems]: Switch hardcoding only
supporting x86_64-linux for supporting all supported systems, other than
i686-linux.
2021-03-08 22:11:21 +00:00
Christopher Baines a0b24d5f8c
gnu: guile-lib: Fix cross compilation.
These changes were sent upstream as
https://lists.gnu.org/archive/html/guile-devel/2021-02/msg00004.html

Without this change, the .go files are built for the host architecture, rather
than the target. I noticed this when cross building the
guix-build-coordinator (for which guile-lib is an input) to the Hurd.

* gnu/packages/guile-xyz.scm (guile-lib)[arguments]: Add
'patch-for-cross-compilation phase.
[native-inputs]: Add autoconf, automake and gettext.
(guile2.0-lib): Adjust to use alist-replace.
(guile2.2-lib): Adjust to use alist-replace.
2021-03-08 22:01:25 +00:00
Leo Famulari 7a43651738
gnu: linux-libre 4.4: Update to 4.4.260.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.260.
(linux-libre-4.4-pristine-source): Update hash.
2021-03-08 15:12:10 -05:00
Leo Famulari 32e415a725
gnu: linux-libre 4.9: Update to 4.9.260.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.260.
(linux-libre-4.9-pristine-source): Update hash.
2021-03-08 15:12:10 -05:00
Leo Famulari 100d31a489
gnu: linux-libre 4.14: Update to 4.14.224.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.224.
(linux-libre-4.14-pristine-source): Update hash.
2021-03-08 15:12:09 -05:00
Leo Famulari cf60b80304
gnu: linux-libre 4.19: Update to 4.19.179.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.179.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-08 15:12:09 -05:00
Leo Famulari 28e3c283ee
gnu: linux-libre 5.4: Update to 5.4.103.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.103.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-08 15:12:09 -05:00
Leo Famulari 2c8aa5fab6
gnu: linux-libre 5.10: Update to 5.10.21.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.21.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-08 15:12:09 -05:00
Leo Famulari a9b11ce179
gnu: linux-libre: Update to 5.11.4.
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.4.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-08 15:12:05 -05:00
Ron Nazarov via Guix-patches via 80599a739d
gnu: Add python-mistletoe.
* gnu/packages/markup.scm (python-mistletoe): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-03-08 19:59:03 +01:00
Sharlatan Hellseher 1cf22d4759
gnu: Add cl-re.
* gnu/package/lisp-xyz.scm: (sbcl-re, cl-re, ecl-re): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-03-08 15:11:49 +01:00