b8e2af9a05
gnu: bitshuffle: Let build phase return #t.
...
* gnu/packages/compression.scm (bitshuffle)[arguments]: Let
"make-required-dir" return #t.
2017-11-18 12:51:22 +01:00
653f2b92b9
gnu: python-pylast: Update to 2.0.0.
...
* gnu/packages/music.scm (python-pylast): Update to 2.0.0.
[native-inputs]: Add python-pycodestyle and python-flaky.
2017-11-18 12:45:19 +01:00
33dc54b08c
gnu: Move date/time packages from python.scm to time.scm.
...
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
2017-11-18 12:45:19 +01:00
762b5a89c2
gnu: Move more testing packages from python.scm to check.scm.
...
* gnu/packages/python.scm (python-flexmock, python2-flexmock,
python-freezegun, python2-freezegun, python-flaky, python2-flaky): Move from
here...
* gnu/packages/check.scm: ...to here.
2017-11-18 12:45:19 +01:00
a0837294ab
gnu: Add java-plexus-container-default.
...
* gnu/packages/java.scm (java-plexus-container-default): New variable.
2017-11-18 11:30:25 +01:00
b51df3ca6f
gnu: Add java-plexus-archiver.
...
* gnu/packages/java.scm (java-plexus-archiver): New variable.
2017-11-18 11:30:15 +01:00
0858b9dc9d
gnu: Add java-plexus-io.
...
* gnu/packages/java.scm (java-plexus-io): New variable.
2017-11-18 11:30:13 +01:00
0726d4ea7c
gnu: Add java-plexus-container-default-bootstrap.
...
* gnu/packages/java.scm (java-plexus-container-default-bootstrap): New
variable.
2017-11-18 11:30:10 +01:00
b80027e5e7
gnu: Add java-tukaani-xz.
...
* gnu/packages/java.scm (java-tukaani-xz): New variable.
2017-11-18 11:30:08 +01:00
78745d331d
gnu: Add java-geronimo-xbean-reflect.
...
* gnu/packages/java.scm (java-geronimo-xbean-reflect): New variable.
2017-11-18 11:30:05 +01:00
0b54e190ab
gnu: Add java-jdom.
...
* gnu/packages/java.scm (java-jdom): New variable.
2017-11-18 11:30:03 +01:00
2caf873e86
gnu: Add java-log4j-1.2-api.
...
* gnu/packages/java.scm (java-log4j-1.2-api): New variable.
2017-11-18 11:30:01 +01:00
dfef4231f7
gnu: Add java-log4j-core.
...
* gnu/packages/java.scm (java-log4j-core): New variable.
2017-11-18 11:29:58 +01:00
46c6905a22
gnu: Add java-kafka-clients.
...
* gnu/packages/java.scm (java-kafka-clients): New variable.
2017-11-18 11:29:55 +01:00
5aa2f3f44b
gnu: Add java-commons-beanutils.
...
* gnu/packages/java.scm (java-commons-beanutils): New variable.
2017-11-18 11:29:53 +01:00
229a9864b6
gnu: Add java-commons-collections.
...
* gnu/packages/java.scm (java-commons-collections): New variable.
2017-11-18 11:29:51 +01:00
51263ff5d2
gnu: Add java-commons-csv.
...
* gnu/packages/java.scm (java-commons-csv): New variable.
2017-11-18 11:29:48 +01:00
217b20e4db
gnu: Add java-jeromq.
...
* gnu/packages/java.scm (java-jeromq): New variable.
2017-11-18 11:29:45 +01:00
3ff47c6665
gnu: Add java-mail.
...
* gnu/packages/java.scm (java-mail): New variable.
2017-11-18 11:29:42 +01:00
5fb3e82217
gnu: Add java-jboss-jms-api-spec.
...
* gnu/packages/java.scm (java-jboss-jms-api-spec): New variable.
2017-11-18 11:29:38 +01:00
823997e969
gnu: Add java-iq80-snappy.
...
* gnu/packages/compression.scm (java-iq80-snappy): New variable.
2017-11-18 11:29:34 +01:00
cea8346688
gnu: Add java-snappy.
...
* gnu/packages/compression.scm (java-snappy): New variable.
2017-11-18 11:29:31 +01:00
9869bb1296
gnu: Add bitshuffle.
...
* gnu/packages/compression.scm (bitshuffle): New variable.
2017-11-18 11:29:25 +01:00
c5a8ecb6d3
gnu: Remove duplicates from (gnu packages tex).
...
* gnu/packages/tex.scm (texlive-latex-hyperref, texlive-latex-fancyvrb):
Remove duplicates.
2017-11-18 11:18:41 +01:00
261b38a978
gnu: r-genomeinfodbdata: Update to 0.99.1.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 0.99.1.
2017-11-18 11:18:41 +01:00
592f4a9434
gnu: r-go-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.5.0.
2017-11-18 11:18:41 +01:00
e4664290ce
gnu: r-org-ce-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
19fc299f68
gnu: r-org-dm-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
f3569f5218
gnu: r-org-mm-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
57dc9b58db
gnu: r-genomationdata: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.10.0.
2017-11-18 11:18:39 +01:00
9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics).
...
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
2017-11-18 11:18:39 +01:00
9c2d0a0369
gnu: Remove duplicate from (gnu packages gnupg).
...
* gnu/packages/gnupg.scm (perl-gnupg-interface): Remove duplicate.
2017-11-18 11:18:39 +01:00
90dbd984f8
gnu: Remove duplicate from (gnu packages bioinformatics).
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Remove duplicate.
2017-11-18 11:18:39 +01:00
c151b0b633
gnu: Remove duplicate from (gnu packages cran).
...
* gnu/packages/cran.scm (r-bbmle): Remove duplicate.
2017-11-18 11:18:38 +01:00
4982d0ac41
gnu: Remove duplicates from (gnu packages java).
...
* gnu/packages/java.scm (java-commons-net, java-asm): Remove duplicates.
2017-11-18 11:18:38 +01:00
676507e388
gnu: r-org-hs-eg-db: Clarify description.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db)[description]: Clarify.
2017-11-18 11:18:38 +01:00
d595fed33d
gnu: r-org-hs-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.5.0.
2017-11-18 11:18:37 +01:00
ccedfd3a43
gnu: r-org-hs-eg-db: Remove duplicate package definition.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Remove duplicate variable.
2017-11-18 11:18:37 +01:00
b9f23702eb
gnu: linux-libre: Remove Tegra DRM from arm configuration.
...
The code fails to compile on armhf using our configuration.
See <https://patchwork.kernel.org/patch/9688615/ > for details.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf: Remove Tegra DRM support.
2017-11-18 04:31:32 -05:00
f10120d40b
gnu: linux-libre: Remove Nouveau from arm configuration.
...
The Nouveau code fails to compile on armhf with our configuration.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf: Disable Nouveau.
2017-11-18 04:30:45 -05:00
b3b07df403
gnu: dino: Update to 0.0-2-2a514d096.
...
* gnu/packages/messaging.scm (dino): Update to 0.0-2-2a514d096.
[source]: Do not fetch libsignal-protocol-c submodule.
[arguments]: Add phase "unpack-sources" to unpack our sources for
libsignal-protocol-c.
[native-inputs]: Add "libsignal-protocol-c-source".
2017-11-18 07:44:27 +01:00
25811886f1
gnu: vim: Update to 8.0.1300.
...
* gnu/packages/vim.scm (vim): Update to 8.0.1300.
2017-11-17 18:25:16 -05:00
40f372af3e
gnu: tuxguitar: Build with icedtea-8.
...
* gnu/packages/music.scm (tuxguitar)[arguments]: Use icedtea-8.
2017-11-17 23:18:50 +01:00
8710d4dd73
gnu: java-swt: Update to 4.7.1a.
...
* gnu/packages/java.scm (java-swt): Update to 4.7.1a.
[arguments]: Build with icedtea-8.
[inputs]: Remove "icecat".
2017-11-17 23:18:50 +01:00
d72f76df11
gnu: eolie: Update to 0.9.12.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.12.
[inputs]: Add python-dateutil.
2017-11-17 23:18:50 +01:00
a8714bf680
gnu: Move database packages from python.scm to databases.scm.
...
* gnu/packages/python.scm (python-ccm, python2-ccm, python2-pysqlite,
python-sqlalchemy, python2-sqlalchemy, python-sqlalchemy-utils,
python2-sqlalchemy-utils, python-alembic, python2-alembic,
python-pickleshare, python2-pickleshare, python-apsw, python2-apsw,
python2-neo4j-driver, python2-py2neo, python-psycopg2, python2-psycopg2,
python-sadisplay, python2-sadisplay, python-mysqlclient,
python2-mysqlclient, python-hiredis, python2-hiredis, python-fakeredis,
python2-fakeredis, python-redis, python2-redis, python-rq, python2-rq,
python-trollius-redis, python2-trollius-redis, python-sqlparse,
python2-sqlparse, python-sql, python2-sql): Move from here...
* gnu/packages/databases.scm: ...to here.
* gnu/packages/tryton.scm,
gnu/packages/python-web.scm,
gnu/packages/nutrition.scm,
gnu/packages/medical.scm: Adjust accordingly.
2017-11-17 22:36:27 +01:00
be6eb2f1e6
gnu: python-scikit-learn: Move from python.scm to machine-learning.scm.
...
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): Move
from here...
* gnu/packages/machine-learning.scm: ...to here.
2017-11-17 22:36:26 +01:00
98c6a02573
gnu: Move more web packages from python.scm to python-web.scm.
...
* gnu/packages/python.scm (python-pastescript, python2-pastescript,
python-paste, python2-paste, python-werkzeug, python2-werkzeug, python-bottle,
python2-bottle, python-wtforms, python2-wtforms): Move from here...
* gnu/packages/python-web.scm: ...to here.
2017-11-17 22:36:26 +01:00
ac257f127a
gnu: Move testing packages from python.scm to check.scm.
...
* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.
2017-11-17 22:36:26 +01:00
ff49437df7
gnu: Add qmidiroute.
...
* gnu/packages/music.scm (qmidiroute): New variable.
2017-11-17 22:36:26 +01:00
fc8d6953e2
gnu: cheese: Update to 3.26.0.
...
* gnu/packages/gnome.scm (cheese): Update to 3.26.0
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-17 16:34:28 -05:00
3fe4c9dcc4
gnu: Add emacs-transmission.
...
* gnu/packages/emacs.scm (emacs-transmission): New variable.
2017-11-17 13:37:12 +03:00
669be6acfe
gnu: cool-retro-term: Fix qml path.
...
* gnu/packages/terminals.scm (cool-retro-term): Fix qml path.
2017-11-17 13:28:08 +03:00
9bc646d053
gnu: eog: Update to 3.26.2.
...
* gnu/packages/gnome.scm (eog): Update to 3.26.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 11:00:20 +01:00
cf8ec425d5
gnu: gnome-disk-utility: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.26.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 11:00:18 +01:00
64a4d39403
gnu: nftables: Update to 0.8.
...
* gnu/packages/linux.scm (nftables): Update to 0.8.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 10:59:21 +01:00
284d7da3bb
gnu: libnftnl: Update to 1.0.8.
...
* gnu/packages/linux.scm (libnftnl): Update to 1.0.8.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 10:59:00 +01:00
ef2c6b4095
gnu: Add qucs-s.
...
* gnu/packages/engineering.scm (qucs-s): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:53:06 +01:00
0b4dbb401c
gnu: syslinux: Add explicit dependency on mtools.
...
Suggested by Adam Van Ymeren <adam@vany.ca>
at <https://bugs.gnu.org/28974 >.
* gnu/packages/bootloaders.scm (syslinux)[inputs]: Add MTOOLS.
[ARGUMENTS]: In 'patch-files' phase, patch references to 'mcopy' and
'mattrib'.
2017-11-16 10:43:40 +01:00
afc4382316
gnu: wget: Add wget2.
...
* gnu/packages/wget.scm (wget2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:27:42 +01:00
15712cc9e3
gnu: spectrwm: Update to 3.1.0.
...
* gnu/packages/wm.scm (spectrwm): Update to 3.1.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:25:40 +01:00
42e52605d4
gnu: xpra: Fix paths.
...
* gnu/packages/xorg.scm (xpra): [arguments]: Add '--without-opengl',
'--without-Xdummy' and '--without-Xdummy-wrapper' to #:configure-flags. Add
substitutions to #phases for proper paths.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:21:40 +01:00
d9cd1c2272
gnu: messaging: Enable OMEMO for dino.
...
* gnu/packages/messaging.scm (dino): Update to commit
f6ac5bbd26638412a2289fd1d28ef12de1d7e8b5.
[inputs]: Add libsignal-protocol-c and libgcrypt.
[arguments]: Change #configure-flags to "-DSHARED_SIGNAL_PROTOCOL=yes".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 09:50:06 +01:00
0d549f60df
gnu: messaging: Add libsignal-protocol-c.
...
* gnu/packages/messaging.scm (libsignal-protocol-c): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 09:42:45 +01:00
589e3f4e70
gnu: Move more packages from python to python-web.
...
* gnu/packages/python.scm (python-requests, python2-requests)
(python-requests-2.7, python-oauthlib, python2-oauthlib)
(python-furl, python2-furl, python-wsgi-intercept)
(python-publicsuffix, python2-publicsuffix)
(python-publicsuffix2, python2-publicsuffix2): Move to...
* gnu/packages/python-web.scm: ... here.
* gnu/packages/bioinformatics.scm, gnu/packages/finance.scm:
gnu/packages/maths.scm, gnu/packages/terminals.scm,
gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust
accordingly.
2017-11-16 08:45:15 +01:00
b95c17c58b
gnu: Move Python packages from crypto to python-crypto.
...
* gnu/packages/crypto.scm (python-asn1crypto, python2-asn1crypto)
(python-pynacl, python2-roca-detect): Move to python-crypto.scm.
* gnu/packages/gnupg.scm (python2-pgpdump): Move to python-crypto.scm.
* gnu/packages/python-crypto.scm (python-asn1crypto, python2-asn1crypto)
(python-pynacl, python2-pgpdump, python2-roca-detect): New variables.
2017-11-16 08:45:15 +01:00
cc6f49121b
gnu: Move crypto packages from python to python-crypto.
...
* gnu/packages/python.scm (python-passlib, python2-passlib)
(python-py-bcrypt, python2-py-bcrypt)
(python-paramiko, python2-paramiko, python-ecdsa, python2-ecdsa)
(python-pycrypto, python2-pycrypto, python-keyring, python2-keyring)
(python-certifi, python2-certifi)
(python-cryptography-vectors, python2-cryptography-vectors)
(python-cryptography, python2-cryptography)
(python-pyopenssl, python2-pyopenssl)
(python-axolotl-curve25519, python2-axolotl-curve25519)
(python-axolotl, python2-axolotl, python2-slowaes)
(python-pyaes, python2-pyaes): Move to...
* gnu/packages/python-crypto.scm: ... here. New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm, gnu/packages/backup.scm,
gnu/packages/crypto.scm, gnu/packages/finance.scm,
gnu/packages/irc.scm, gnu/packages/jrnl.scm,
gnu/packages/messaging.scm, gnu/packages/openstack.scm,
gnu/packages/python-web.scm, gnu/packages/tls.scm,
gnu/packages/xorg.scm: Adjust accordingly.
2017-11-16 08:45:15 +01:00
c114c9c5d8
gnu: linux-libre: Update to 4.14.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.13-arm.conf,
gnu/packages/aux-files/linux-libre/4.13-i686.conf,
gnu/packages/aux-files/linux-libre/4.13-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf,
gnu/packages/aux-files/linux-libre/4.14-i686.conf,
gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
2017-11-16 00:03:34 -05:00
811a24ca5f
gnu: linux-libre@4.9: Update to 4.9.62.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.62.
2017-11-16 00:03:00 -05:00
6f0e2c2b4a
gnu: linux-libre@4.4: Update to 4.4.98.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.98.
2017-11-16 00:02:24 -05:00
f1e3214534
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
Add fixes for CVE-2017-7830, the remaining 1/2 changesets for CVE-2017-7828,
the remaining 1/19 changesets for CVE-2017-7826, and selected other fixes.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1415133.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-16 00:01:46 -05:00
6a71fa6faa
gnu: icecat: Label patches to reflect CVE assignments.
...
Document that we include 18/19 changesets for CVE-2017-7826, and 1/2
changesets for CVE-2017-7828.
* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
2017-11-16 00:01:21 -05:00
ed0f9f53ab
gnu: iproute2: Update to 4.14.1.
...
* gnu/packages/linux.scm (iproute): Update to 4.14.1.
2017-11-15 12:45:26 +01:00
7c1adf0090
gnu: gnucash: Use HTTPS for www.gnucash.org.
...
* gnu/packages/gnucash.scm (gnucash, gnucash-docs)[home-page]: Use HTTPS.
2017-11-15 03:19:19 +01:00
471ce31cd7
gnu: gnucash: Update to 2.6.18.
...
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.18.
2017-11-15 03:19:18 +01:00
c27f48573e
gnu: youtube-dl: Update to 2017.11.15.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.15.
2017-11-15 03:19:18 +01:00
99adfd7d3d
gnu: geoclue: Use HTTPS for home page.
...
* gnu/packages/gnome.scm (geoclue)[home-page]: Use HTTPS.
2017-11-15 03:19:18 +01:00
dba7028f14
gnu: geoclue: Update to 2.4.7.
...
* gnu/packages/gnome.scm (geoclue): Update to 2.4.7.
2017-11-15 03:19:17 +01:00
06d2a63c15
gnu: aria2: Update to 1.33.1.
...
* gnu/packages/bittorrent.scm (aria2): Update 1.33.1.
2017-11-15 03:19:17 +01:00
c115b2dbe0
gnu: smartmontools: Mark up description.
...
* gnu/packages/admin.scm (smartmontools)[description]: Use @dfn.
2017-11-15 03:19:17 +01:00
bd2eedd116
gnu: smartmontools: Update to 6.6.
...
* gnu/packages/admin.scm (smartmontools): Update to 6.6.
2017-11-15 03:19:16 +01:00
8c2dcedd1d
gnu: devhelp: Update to 3.26.0.
...
* gnu/packages/gnome.scm (devhelp): Update to 3.26.0.
2017-11-14 17:50:33 -05:00
1697307185
gnu: Add guile-wiredtiger.
...
* gnu/packages/databases.scm (guile-wiredtiger): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-14 23:46:53 +01:00
52b617ffeb
gnu: Update awscli to 1.11.185.
...
* gnu/packages/python-web.scm (awscli): Update to 1.11.185.
2017-11-14 14:20:42 -05:00
31d9e454ad
gnu: gnome-calculator: Update to 3.26.0.
...
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.26.0.
2017-11-14 14:12:42 -05:00
a5a22d7b14
gnu: gnome-system-monitor: Update to 3.26.0.
...
* gnu/packages/gnome.scm (gnome-system-monitor): Update to 3.26.0.
2017-11-14 13:47:03 -05:00
85a9ffcbf4
gnu: exim: Use HTTPS for home page.
...
* gnu/packages/mail.scm (exim)[home-page]: Use HTTPS.
2017-11-14 04:06:53 +01:00
58b8d1b39f
gnu: iproute2: Update to 4.14.0.
...
* gnu/packages/linux.scm (iproute): Update to 4.14.0.
2017-11-14 04:06:53 +01:00
1b2f753d9c
gnu: Move web packages from python to python-web.
...
This is in part to address <https://bugs.gnu.org/27284 >.
* gnu/packages/python.scm (python-httplib2, python2-httplib2)
(python-sockjs-tornado, python2-sockjs-tornado)
(python-flask-babel, python2-flask-babel)
(python-html5lib, python2-html5lib)
(python-html5lib-0.9, python2-html5lib-0.9)
(python-html5-parser, python2-html5-parser)
(python-webencodings, python2-webencodings)
(python-openid, python2-openid, python-cssutils, python2-cssutils)
(python-cssselect, python2-cssutils)
(python-openid-cla, python2-openid-cla)
(python-openid-teams, python2-openid-teams)
(python-tornado, python2-tornado)
(python-tornado-http-auth, python-terminado, python2-terminado)
(python-webob, python2-webob, python-zope-event, python2-zope-event)
(python-zope-interface, python2-zope-interface)
(python-zope-exceptions, python2-zope-exceptions)
(python-zope-testing, python2-zope-testing)
(python-zope-testrunner, python2-zope-testrunner)
(python-zope-i18nmessageid, python2-zope-i18nmessageid)
(python-zope-schema, python2-zope-schema)
(python-zope-configuration, python2-zope-configuration)
(python-zope-proxy, python2-zope-proxy)
(python-zope-location, python2-zope-location)
(python-zope-security, python2-zope-security)
(python-zope-component, python2-zope-component)
(python-ndg-httpsclient, python2-ndg-httpsclient)
(python-websocket-client, python2-websocket-client)
(python-requests-toolbelt, python2-requests-toolbelt)
(python-rauth, python2-rauth, python-urllib3, python2-urllib3)
(awscli, python-wsgiproxy2, python2-wsgiproxy2)
(python-pastedeploy, python2-pastedeploy)
(python-webtest, python2-webtest, python-flask, python2-flask)
(python-flast-wtf, python2-flask-wtf)
(python-flask-multistatic, python2-flask-multistatic)
(python-cookies, python2-cookies)
(python-responses, python2-responses)
(python-geventhttpclient, python2-geventhttpclient)
(python-requests-oauthlib, python2-requests-oauthlib)
(python-url, python2-url, python-cachecontrol, python2-cachecontrol)
(python-betamax, python2-betamax)
(python-betamax-matchers, python2-betamax-matchers)
(python-s3transfer, python2-s3transfer)
(python-flask-restful, python-flask-basicauth)
(python-flask-sqlalchemy, python-flask-restplus)
(python-flask-restful-swagger, python-htmlmin, python2-htmlmin)
(python-flask-htmlmin, python2-flask-htmlmin)
(python-flask-login, python2-flask-login)
(python-oauth2client, python-flask-oidc)
(python-webassets, python-cssmin, python2-cssmin)
(python-elasticsearch, python2-elasticsearch)
(python-flask-script, python2-flask-script)
(python-flask-migrate, python2-flask-migrate)
(python-genshi, python2-genshi)
(python-flask-principal, python2-flask-principal)
(python-flask-httpauth, python2-flask-httpauth)
(python-uritemplate, python2-uritemplate): Move to...
* gnu/packages/python-web.scm: ... here. New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm, gnu/packages/backup.scm,
gnu/packages/dav.scm, gnu/packages/django.scm,
gnu/packages/docker.scm, gnu/packages/ebook.scm,
gnu/packages/logging.scm, gnu/packages/mail.scm,
gnu/packages/music.scm, gnu/packages/openstack.scm,
gnu/packages/package-management.scm, gnu/packages/rdf.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/tryton.scm, gnu/packages/version-control.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm: Adjust accordingly.
2017-11-13 23:41:01 +01:00
a68e586097
gnu: diamond: Update to 0.9.13.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
2017-11-14 08:25:43 +10:00
5ccde2079e
gnu: Move test packages from perl to perl-check.
...
* gnu/packages/perl.scm (perl-test2-bundle-extended,
perl-test2-plugin-nowarnings, perl-test-base, perl-test-class,
perl-test-class-most, perl-test-cleannamespaces, perl-test-command,
perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep,
perl-test-differences, perl-test-directory, perl-test-eol,
perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist,
perl-test-files, perl-test-harness, perl-test-leaktrace,
perl-test-longstring, perl-test-manifest, perl-test-memory-cycle,
perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs,
perl-test-notabs, perl-test-nowarnings, perl-test-number-delta,
perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires,
perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint,
perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn,
perl-test-warnings, perl-test-without-module, perl-test-writevariants,
perl-test-yaml, perl-test-trailingspace): Move variables to ...
* gnu/packages/perl-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/glib.scm,
gnu/packages/gnupg.scm,
gnu/packages/image-viewers.scm,
gnu/packages/language.scm,
gnu/packages/networking.scm,
gnu/packages/package-management.scm,
gnu/packages/perl.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/version-control.scm,
gnu/packages/web.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm: Use perl-check module.
2017-11-13 23:03:01 +01:00
587d175266
gnu: ghc-tls: Move to (gnu packages tls).
...
* gnu/packages/haskell.scm (ghc-tls): Move from here...
* gnu/packages/tls.scm (ghc-tls): ...to here.
* gnu/packages/haskell-web.scm: Use (gnu packages tls).
2017-11-13 18:40:55 +01:00
f24eba89f4
gnu: Move crypto packages from haskell to haskell-crypto.
...
* gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse,
ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5,
ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem,
ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation,
ghc-x509-system): Move variables to ...
* gnu/packages/haskell-crypto.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/haskell-web.scm,
gnu/packages/version-control.scm: Include haskell-crypto module.
2017-11-13 18:36:51 +01:00
44b7374a22
gnu: Move web packages from haskell to haskell-web.
...
* gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http,
ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2,
ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit,
ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types,
ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty,
ghc-aeson-qq, ghc-multipart): Move variables to ...
* gnu/packages/haskell-web.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-web module.
2017-11-13 18:12:37 +01:00
a06b9b5007
gnu: Move testing packages from haskell to haskell-check.
...
* gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml,
ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty,
ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun,
ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io,
ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit,
ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit,
hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib,
ghc-hspec-expectations): Move variables to ...
* gnu/packages/haskell-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-check module.
2017-11-13 18:12:27 +01:00
d4735e8c65
gnu: cd-hit: Update source tarball hash.
...
* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
2017-11-13 16:02:35 +01:00
62f0806f4c
Revert "gnu: totem: Enable parallel build."
...
This reverts commit e5f748a6c0
2017-11-13 07:47:23 -05:00
b918473189
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to ff23b47
2017-11-13 11:31:27 +01:00
6b7490b340
gnu: ibus: Update to 1.5.17.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
2017-11-13 10:19:26 +02:00
ce12b31157
gnu: ibus: Enable wayland support.
...
* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable
wayland support.
[inputs]: Add wayland.
2017-11-13 10:19:26 +02:00
f35bb0711c
gnu: libsoup: Update to 2.60.2.
...
* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
2017-11-12 21:20:24 -05:00
c0d1fa64d0
gnu: imagemagick: Update to 6.9.9-23.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
2017-11-12 17:50:01 -05:00
2560aa7adb
gnu: Remove unrar.
...
This package is abandoned upstream and contains serious bugs:
http://seclists.org/oss-sec/2017/q3/329
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122
* gnu/packages/compression.scm (unrar): Remove variable.
2017-11-12 16:17:08 -05:00
8420c7a356
gnu: linux-libre: Change URL to HTTPS.
...
* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-12 15:46:44 -05:00
1650cf9284
gnu: mupdf: Unbundle mujs.
...
* gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs.
[inputs]: Add mujs.
2017-11-12 19:39:21 +02:00
89ba894eb3
gnu: Add mujs.
...
* gnu/packages/javascript.scm (mujs): New variable.
2017-11-12 19:39:20 +02:00
76379dcace
gnu: mupdf: Use https.
...
* gnu/packages/pdf.scm (mupdf)[source]: Use https.
[home-page]: Same.
2017-11-12 19:39:20 +02:00
31f248fa2c
gnu: pdf.scm: Arrange modules alphabetically.
...
* gnu/packages/pdf.scm: Arrange modules alphabetically.
2017-11-12 19:39:17 +02:00
b07bfd06ee
gnu: lash: Don't build static libraries.
...
* gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to
disable static libraries.
2017-11-12 12:04:49 +02:00
44df780768
gnu: lash: Don't build lashd.
...
This fixes bug#28174.
* gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
2017-11-12 12:04:46 +02:00
c7b433de47
gnu: glib-networking: Update to 2.54.1.
...
* gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
2017-11-12 01:17:10 -05:00
1e2a36e1b0
gnu: ffmpeg: Reduce the size of the closure.
...
* gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to
disable the html man pages and the static libraries.
2017-11-12 07:11:29 +02:00
7e0d513fb9
gnu: mupdf: Use Texinfo for the description.
...
* gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the
description.
2017-11-12 07:11:25 +02:00
b7ca42aa99
gnu: w3m: Find an editor in the environment.
...
* gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor
in #:configure-flags.
[source]: Use git-file-name.
2017-11-11 23:04:39 -05:00
882d921344
gnu: mupdf: Actually fix CVE-2017-15587.
...
The original fix could be removed by an optimizing compiler.
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
2017-11-11 22:34:24 -05:00
07cc9245e6
gnu: libusb-compat: Use the same home page as libusb.
...
* gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
2017-11-12 03:25:49 +01:00
5ade9bc769
gnu: fcgi: Fix typo in description.
...
* gnu/packages/web.scm (fcgi)[description]: Fix typo.
2017-11-12 03:25:48 +01:00
d1b5043947
gnu: fcgi: Use archived home page fork.
...
* gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
2017-11-12 03:25:48 +01:00
9c2917f9e7
gnu: lynx: Use new home page.
...
* gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
2017-11-12 03:25:47 +01:00
6862e4bfe7
gnu: perl-mime-types: Update to 2.14.
...
* gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
2017-11-12 03:25:47 +01:00
f9035ef213
gnu: mailutils: Update to 3.4.
...
* gnu/packages/mail.scm (mailutils): Update to 3.4.
2017-11-11 23:21:54 +01:00
cda2e2c719
gnu: emacs-emms: Update to 4.4.
...
* gnu/packages/emacs.scm (emms): Update to 4.4.
2017-11-11 23:21:54 +01:00
327df26fbf
gnu: nyacc: Update to 0.82.4.
...
* gnu/packages/mes.scm (nyacc): Update to 0.82.4.
2017-11-11 23:11:04 +01:00
4564782c3d
gnu: nvi: Build with support for Unicode text.
...
* gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar'
to #:configure-flags.
2017-11-11 12:00:37 -05:00
56f35d92f5
gnu: lvm2: Update to 2.02.176.
...
* gnu/packages/linux.scm (lvm2): Update to 2.02.176.
2017-11-11 07:40:55 +01:00
ec03062171
gnu: libstaroffice: Update to 0.0.5.
...
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
2017-11-11 07:18:34 +01:00
45d5c80253
gnu: libvisio: Update to 0.1.6.
...
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6.
[source](patches): Remove.
* gnu/packages/patches/libvisio-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:15:39 +01:00
7a9283a619
gnu: libetonyek: Update to 0.1.7.
...
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.7.
[source](patches): Remove.
[arguments]<#:phases>: Remove.
[native-inputs]: Remove AUTOCONF and AUTOMAKE.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:13:01 +01:00
074ff555ab
gnu: libreoffice: Update to 5.3.7.2 and enable GTK3.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.7.2
[source]: Change URL to HTTPS.
[inputs]: Add gtk+.
[configure-flags]: Remove "--disable-gtk3".
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 07:03:06 +01:00
ce1ac8eea6
gnu: python2-rpython: Update to 0.2.1.
...
* gnu/packages/python.scm (python2-rpython): Update to 0.2.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 07:00:22 +01:00
e65acb3124
gnu: python-sympy: Update to 1.1.1.
...
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.1.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 06:57:00 +01:00
e077e7da7f
gnu: python-sqlparse: Fix syntax error.
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This is a follow-up to commit 8d688cd27f
2017-11-11 06:40:50 +01:00
8d688cd27f
gnu: python-sqlparse: Update to 0.2.4.
...
* gnu/packages/python.scm (python-sqlparse, python2-sqlparse): Update to
0.2.4.
[arguments]: Don't invoke ‘2to3’.
2017-11-11 05:17:59 +01:00
9629c6b4b2
gnu: cyrus-sasl: Use new home page.
...
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[home-page]: Update.
2017-11-11 05:17:58 +01:00
11ed4108fb
gnu: methylkit: Use new home page.
...
* gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
2017-11-11 05:17:58 +01:00
7c087150ec
gnu: vsearch: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
2017-11-11 09:33:16 +10:00
74c0aeb027
gnu: webkitgtk: Update to 2.18.3 [fixes CVE-2017-{13788,13798,13803}].
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.3.
2017-11-10 12:48:15 -05:00
adf7e69cab
gnu: qemu: Fix CVE-2017-{15038,15268,15289}.
...
* gnu/packages/patches/qemu-CVE-2017-15038.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch,
gnu/packages/patches/qemu-CVE-2017-15289.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-10 12:16:31 -05:00
d4d7d70912
gnu: Fix hunspell-dict-en-* dictionary installation.
...
* gnu/packages/aspell.scm (aspell-word-list)[arguments]: Install the .dic file
for all hunspell dictionaries.
2017-11-10 11:59:09 -05:00
0af4df7e61
gnu: cutadapt: Update to 1.14.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.14.
2017-11-10 15:32:42 +01:00
ae451b9dc2
gnu: synergy: Fix minor problems with the package definitions.
...
* gnu/packages/synergy.scm (synergy)[source]: Return #t in the snippet.
[arguments]: Let build phases return #t; fix typo in comment.
[home-page]: Change to redirection target.
[description]: Fix typo.
2017-11-10 15:19:06 +01:00
177475cfb5
gnu: password-store: Install passmenu script.
...
* gnu/packages/password-utils (password-store)
[inputs]: Add dmenu and xdotool.
[arguments]<#:phases>['patch-passmenu-path']: New phase.
[arguments]<#:phases>['install-passmenu']: New phase.
2017-11-10 14:22:28 +01:00
011f57695a
gnu: Add Epson escpr printer driver.
...
* gnu/packages/cups.scm (escpr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-10 13:07:54 +01:00
179b7ac66d
gnu: postgresql@9.6: Update to 9.6.6 [security fixes].
...
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099.
* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10 10:24:13 +02:00
74bea6a036
gnu: linux-libre: Update to 4.13.12.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.12.
(%linux-libre-hash): Update hash.
2017-11-09 21:11:00 -05:00
4cacbf33a6
gnu: linux-libre@4.9: Update to 4.9.61.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.61.
2017-11-09 21:10:14 -05:00
3a79bd03ff
gnu: linux-libre@4.4: Update to 4.4.97.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.97.
2017-11-09 21:09:34 -05:00
f8071bea91
gnu: linux-libre@4.1: Update to 4.1.46.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.46.
2017-11-09 21:08:51 -05:00
3c3d20c8f3
gnu: libpsl: Update to 0.19.1.
...
* gnu/packages/web.scm (libpsl): Update to 0.19.1.
2017-11-10 02:37:15 +01:00
1d8e73ba67
gnu: postgresql: Update to 10.1 [security fixes].
...
Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099.
* gnu/packages/databases.scm (postgresql): Update to 10.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-10 01:22:53 +01:00
e99f045cc8
gnu: Add r-directlabels.
...
* gnu/packages/statistics.scm (r-directlabels): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
d3150731a8
gnu: emacs-ahungry-theme: Update to 1.8.0.
...
* gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.8.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
f021382be4
gnu: Add nxbelld.
...
* gnu/packages/xdisorg.scm (nxbelld): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
d8f075c3a3
gnu: %intel-compatible-systems: Re-add variable.
...
This is a follow-up to cfbe7b7f4c
2017-11-09 22:25:48 +02:00
cfbe7b7f4c
gnu: linux: Add linux-libre arm kernel.
...
* Makefile.am (AUX_FILES): Add arm config file.
* gnu/packages/aux-files/linux-libre/4.13-arm.conf: New file.
* gnu/packages/linux.scm (%intel-compatible-systems): Rename to
%linux-compatible-systems and add "armhf-linux".
(linux-libre): Adapt consequently.
The config file for arm is taken from debian armmp kernel. It's a generic
firmware for ARMv7 multiplatform compatible SoCs.
2017-11-09 20:35:11 +01:00
3694a9b33b
gnu: chromaprint: Update to 1.4.2.
...
* gnu/packages/mp3.scm (chromaprint): Update to 1.4.2.
2017-11-09 13:23:39 -05:00
ad9b8987f3
gnu: libwnck: Update to 3.24.1.
...
* gnu/packages/gnome.scm (libwnck): Update to 3.24.1.
2017-11-09 12:17:37 -05:00
da4a707c88
gnu: roary: Update to 3.11.0.
...
* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
2017-11-09 18:12:32 +10:00
e5f748a6c0
gnu: totem: Enable parallel build.
...
* gnu/packages/gnome.scm (totem)[arguments]: Set #:parallel-build? to #t
implicitly.
2017-11-08 20:43:40 -05:00
8f220b7b41
gnu: tremc: Update to 0.9.0-1.9755b50.
...
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.0-1.9755b50.
[version]: Use git-version.
[source]: Use git-file-name.
2017-11-08 19:32:32 -05:00
ea1f073d73
gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].
...
* gnu/packages/parallel.scm (slurm): Update to 16.05.11.
[source]: Use the recommended download URL.
2017-11-08 19:32:31 -05:00
a3dd13ae0e
gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}].
...
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.2.
2017-11-08 19:00:07 -05:00
7df4194b16
gnu: python-icalendar: Update to 4.0.0.
...
* gnu/packages/python.scm (python-icalendar): Update to 4.0.0.
2017-11-08 18:36:29 -05:00
03b154f800
gnu: syncthing: Update to 0.14.40.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.40.
[inputs]: Add go-github-com-zillode-notify.
2017-11-08 17:24:02 -05:00
52ff28e4aa
gnu: Add go-github-com-zillode-notify.
...
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): New variable.
2017-11-08 17:24:01 -05:00
4cf6827de3
gnu: go-github-com-audriusbutkevicius-kcp-go: Update to 0.0.0-1.8ae5f52.
...
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go):
Update to 0.0.0-1.8ae5f52.
[propagated-inputs]: Add go-github-com-tjfoc-gmsm-sm4.
2017-11-08 17:24:01 -05:00
f44169c2a7
gnu: Add go-github-com-tjfoc-gmsm-sm4.
...
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): New variable.
2017-11-08 17:24:01 -05:00
34260a10d7
gnu: miso: Use pypi-uri.
...
* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08 17:41:08 +01:00
e5c17b8d9d
gnu: Add r-vcd.
...
* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08 17:34:35 +01:00
018cf270a3
gnu: Add r-laeken.
...
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08 17:34:11 +01:00
697e341e74
gnu: fastcap: Use texlive-tiny.
...
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with
texlive-tiny.
[arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font
errors with texlive-tiny.
2017-11-08 17:15:24 +01:00
7e3aca2b78
gnu: librecad: Fix build.
...
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"patch-boost-error".
2017-11-08 16:21:54 +01:00
b72b42cf02
gnu: Add r-performanceanalytics.
...
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08 16:21:54 +01:00
3699383e6f
gnu: Add r-xts.
...
* gnu/packages/cran.scm (r-xts): New variable.
2017-11-08 16:21:53 +01:00
5a80c15c14
gnu: Remove "open source" from descriptions.
...
All software in Guix is Free Software.
* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
88fb156288
gnu: pcb: Update to 4.0.2.
...
* gnu/packages/engineering.scm (pcb): Update to 4.0.2.
[arguments]: Add build phase "fix-check-for-display".
2017-11-08 16:21:53 +01:00
c8b38f8ea6
gnu: time: Update license.
...
* gnu/packages/time.scm (time)[license]: Change to gpl3+.
2017-11-08 10:52:09 +02:00
dd00e0919f
gnu: time: Update to 1.8.
...
* gnu/packages/time.scm (time): Update to 1.8.
[arguments]: Remove custom 'configure phase.
2017-11-08 10:49:19 +02:00
12a24ee878
gnu: Add glusterfs.
...
* gnu/packages/file-systems.scm (glusterfs): New variable.
2017-11-07 23:32:46 +01:00
2e648d2bc4
gnu: r-prabclus: Update description.
...
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
14e5f6b20a
gnu: r-fdrtool: Update description.
...
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
738dda8330
gnu: Add r-bbmle.
...
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-11-07 23:32:46 +01:00
7b0569c0a9
gnu: Add r-rsofia.
...
* gnu/packages/cran.scm (r-rsofia): New variable.
2017-11-07 23:32:46 +01:00
c49102ecca
gnu: Add r-hitc.
...
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
2017-11-07 23:32:45 +01:00
30eb4e37c8
gnu: Add r-fithic.
...
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
2017-11-07 23:32:45 +01:00
fbf5440637
gnu: Add r-sushi.
...
* gnu/packages/bioinformatics.scm (r-sushi): New variable.
2017-11-07 23:32:45 +01:00
9232cac410
gnu: Add r-vioplot.
...
* gnu/packages/cran.scm (r-vioplot): New variable.
2017-11-07 23:32:45 +01:00
3a22732cd8
gnu: Add r-sm.
...
* gnu/packages/cran.scm (r-sm): New variable.
2017-11-07 23:32:45 +01:00
2e4ce60e7c
gnu: Add r-gwascat.
...
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
2017-11-07 23:32:44 +01:00
4272000661
gnu: Add r-gviz.
...
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
2017-11-07 23:32:44 +01:00
794ff347a9
gnu: Add r-gqtlstats.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
2017-11-07 23:32:44 +01:00
7fd5f60b8f
gnu: Add r-hardyweinberg.
...
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
2017-11-07 23:32:44 +01:00
10e16fa93d
gnu: Add r-mice.
...
* gnu/packages/cran.scm (r-mice): New variable.
2017-11-07 23:32:44 +01:00
66c39102e5
gnu: Add r-ldblock.
...
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
2017-11-07 23:32:44 +01:00
15f98b0d23
gnu: Add r-erma.
...
* gnu/packages/bioinformatics.scm (r-erma): New variable.
2017-11-07 23:32:43 +01:00
421c68e3f7
gnu: Add r-homo-sapiens.
...
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
2017-11-07 23:32:43 +01:00
b52a866d14
gnu: Add r-org-hs-eg-db.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2017-11-07 23:32:43 +01:00
dd5fc8b78e
gnu: Add r-snpstats.
...
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
2017-11-07 23:32:43 +01:00
e2b927993e
gnu: Add r-gqtlbase.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
2017-11-07 23:32:43 +01:00
96a392a0b2
gnu: Add r-gprofiler.
...
* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
2017-11-07 23:32:42 +01:00
60faf94597
gnu: Add r-ggbio.
...
* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
2017-11-07 23:32:42 +01:00
7af1f40373
gnu: Add r-biovizbase.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
2017-11-07 23:32:42 +01:00
2f6f61fd8e
gnu: Add r-organismdbi.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
2017-11-07 23:32:42 +01:00
aa30ab5aee
gnu: Add r-ensembldb.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
2017-11-07 23:32:42 +01:00
763e98103a
gnu: Add r-annotationfilter.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-11-07 23:32:42 +01:00
04e2a2e969
gnu: Add r-dirichletmultinomial.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
2017-11-07 23:32:41 +01:00
3af149f524
gnu: Add r-complexheatmap.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
2017-11-07 23:32:41 +01:00
902fb15d92
gnu: Add r-genomicfiles.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
2017-11-07 23:32:41 +01:00
cd215877a0
gnu: bdftopcf: Update to 1.1.
...
* gnu/packages/xorg.scm (bdftopcf): Update to 1.1.
[native-inputs]: Change from LIBXFONT to LIBXFONT2.
2017-11-07 23:29:23 +01:00
d469bc09bd
gnu: feh: Update to 2.22.2.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.2.
2017-11-07 22:16:27 +01:00
625492ee1a
gnu: gcc-4.7: Resurrect building with gcc-5.4.0.
...
* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.7): Use it.
2017-11-07 22:03:51 +01:00
a67f094671
gnu: Add websockify.
...
* gnu/packages/web.scm (websockify): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:56:42 +01:00
75d342ffa9
gnu: Add python-networkx2.
...
* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables.
* gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: New file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:17:20 +01:00
2b295f5a2f
gnu: Add python-pydot.
...
* gnu/packages/graphviz.scm (python-pydot, python2-pydot): New variables.
Modified-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:03:15 +01:00
38ad27da80
gnu: mercurial: Update to 4.4.1.
...
* gnu/packages/version-control.scm (mercurial): Update to 4.4.1.
2017-11-07 20:23:29 +01:00
4a30c1c0e2
gnu: vim: Update to 8.0.1274 [fixes CVE-2017-1000382].
...
* gnu/packages/vim.scm (vim): Update to 8.0.1274.
2017-11-07 20:21:46 +01:00
31a963fe80
gnu: notmuch: Update to 0.25.2.
...
* gnu/packages/mail.scm (notmuch): Update to 0.25.2.
2017-11-07 20:01:03 +01:00
9129804230
gnu: psm: Only use as an input on supported-systems.
...
Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
2017-11-07 20:41:08 +02:00
b516b78002
gnu: psm: Limit supported systems.
...
* gnu/packages/linux.scm (psm)[supported-systems]: New field, limit to
i686-linux and x86_64-linux.
2017-11-07 20:41:05 +02:00
174807b9a4
gnu: gnupg: Update to 2.2.2.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.2.
2017-11-07 19:34:29 +02:00
2f17187ff3
gnu: mediainfo: Change order of custom phases.
...
* gnu/packages/video.scm (mediainfo)[arguments]: Change to the build
directory before executing the autogen script.
2017-11-07 19:34:25 +02:00
6541673354
gnu: linux: Fix kconfig selection.
...
* gnu/packages/linux.scm (make-linux-libre): When cross-compiling,
"kconfig" field is in native-inputs variable. So config is always #f
when cross-compiling linux.
2017-11-07 18:16:02 +01:00
f4433d09a1
gnu: openmpi: Add dependency on PSM.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
7bc05ef0ac
gnu: libfabric: Add dependency on PSM.
...
* gnu/packages/linux.scm (libfabric)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
fd23d259cd
gnu: Add PSM.
...
* gnu/packages/linux.scm (psm): New variable.
* gnu/packages/patches/psm-arch.patch,
gnu/packages/patches/psm-ldflags.patch,
gnu/packages/patches/psm-repro.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-07 18:09:13 +01:00
63b7fbe1bb
gnu: diffoscope: Update to 88.
...
* gnu/packages/package-management.scm (diffoscope): Update to 88.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
db0164b21f
gnu: awesome: Update to 4.2.
...
* gnu/packages/wm.scm (awesome): Update to 4.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
51bc8357e8
gnu: gdm: Add configure flags for better defaults.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:configure-flags>: Add
--with-initial-vt=7 and --enable-gdm-xsession.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
950d8e5d8c
gnu: gdm: Fix config file path.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:phases>: Fix the
'pre-configure phase so that GDM finds its config file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
ad54924285
gnu: expect: Change home-page to http://expect.sourceforge.net/ .
...
* gnu/packages/tcl.scm (expect): Change home-page to
http://expect.sourceforge.net/ .
2017-11-07 18:50:46 +03:00
e160aa1f81
gnu: Add r-gage.
...
* gnu/packages/bioinformatics.scm (r-gage): New variable.
2017-11-07 12:39:51 +01:00
3121814ef1
gnu: Add r-keggrest.
...
* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
2017-11-07 12:39:51 +01:00
a9540107c6
gnu: antlr3-3.3: Prettify build phases.
...
* gnu/packages/java.scm (antlr3-3.3)[arguments]: Prettify build phases
"bin-install" and "generate-grammar".
2017-11-07 12:39:50 +01:00
9ecc4c69eb
gnu: r-servr: Update to 0.8.
...
* gnu/packages/web.scm (r-servr): Update to 0.8.
2017-11-07 08:15:45 +01:00
60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
2017-11-07 08:15:44 +01:00
baa00ee90d
gnu: r-msnbase: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
2017-11-07 08:15:44 +01:00
39d9098def
gnu: r-mutationalpatterns: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
2017-11-07 08:15:44 +01:00
14b3c71911
gnu: r-annotationhub: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
2017-11-07 08:15:44 +01:00
15ca195979
gnu: r-mzr: Remove bundled copy of boost.
...
* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
2017-11-07 08:15:44 +01:00
34b9675449
gnu: r-mzr: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
2017-11-07 08:15:43 +01:00
b500dbcdef
gnu: r-mzid: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
2017-11-07 08:15:43 +01:00
eeaa6967f9
gnu: r-chipseq: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
2017-11-07 08:15:43 +01:00
158b6743dc
gnu: r-genomicfeatures: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
2017-11-07 08:15:43 +01:00
74248d22a0
gnu: Add r-rmysql.
...
* gnu/packages/databases.scm (r-rmysql): New variable.
2017-11-07 08:15:43 +01:00
4dd469ef6d
gnu: r-rtracklayer: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
2017-11-07 08:15:42 +01:00
a044c7f4c4
gnu: r-biocparallel: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
2017-11-07 08:15:42 +01:00
42e11d3301
gnu: r-biomart: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
2017-11-07 08:15:42 +01:00
010ab2ffd2
gnu: r-edger: Update to 3.20.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:42 +01:00
eb3f5cc76a
gnu: r-gostats: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.44.0.
[propagated-inputs]: Add r-rgraphviz.
2017-11-07 08:15:41 +01:00
2404cc4283
gnu: r-category: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.44.0.
[propagated-inputs]: Remove r-rsqlite; add r-dbi.
2017-11-07 08:15:41 +01:00
Ricardo Wurmus
Julien Lepiller
Mark H Weaver
Leo Famulari
Rutger Helling
Oleg Pykhalov
Theodoros Foradis
Ludovic Courtès
ng0
Tobias Geerinckx-Rice
Kei Kebreau
Kristofer Buffington
David Thompson
Ben Woodcroft
Efraim Flashner
Jan Nieuwenhuizen
Marius Bakke
Alex Vong
Jelle Licht
Diego Nicola Barbato
Kyle Meyer
Marek Benc
Mathieu Othacehe
Gábor Boskovits
Dave Love
Timothy Sample