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104267 Commits (6123f0e467aa5249f0a497c89ce434222702a535)

Author SHA1 Message Date
Ricardo Wurmus 669d3a7570
gnu: r-vctrs: Update to 0.5.0.
* gnu/packages/cran.scm (r-vctrs): Update to 0.5.0.
[propagated-inputs]: Add r-lifecycle.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus f593b5e92b
gnu: r-xfun: Update to 0.34.
* gnu/packages/cran.scm (r-xfun): Update to 0.34.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus 80905f72ca
gnu: r-seriation: Update to 1.4.0.
* gnu/packages/cran.scm (r-seriation): Update to 1.4.0.
[propagated-inputs]: Add r-ca.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus 0b28bfd2c4
gnu: r-webshot: Update to 0.5.4.
* gnu/packages/cran.scm (r-webshot): Update to 0.5.4.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus bb0c4ff189
gnu: r-processx: Update to 3.8.0.
* gnu/packages/cran.scm (r-processx): Update to 3.8.0.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus a8f7afe2eb
gnu: r-cli: Update to 3.4.1.
* gnu/packages/cran.scm (r-cli): Update to 3.4.1.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus d80e644185
gnu: r-ggridges: Update to 0.5.4.
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.4.
[propagated-inputs]: Remove r-plyr.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus 39bbfde4dd
gnu: r-dtw: Update to 1.23-1.
* gnu/packages/cran.scm (r-dtw): Update to 1.23-1.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus 8759fd469a
gnu: r-xts: Update to 0.12.2.
* gnu/packages/cran.scm (r-xts): Update to 0.12.2.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus a42a9931d6
gnu: r-smurf: Update to 1.1.3.
* gnu/packages/cran.scm (r-smurf): Update to 1.1.3.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus 0091c4bee4
gnu: r-ucminf: Update to 1.1-4.1.
* gnu/packages/cran.scm (r-ucminf): Update to 1.1-4.1.
2022-11-04 10:01:08 +01:00
Ricardo Wurmus 1147d13c2b
gnu: r-stringdist: Update to 0.9.9.
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.9.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 388795939b
gnu: r-recipes: Update to 1.0.2.
* gnu/packages/cran.scm (r-recipes): Update to 1.0.2.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 33160ec99a
gnu: r-psych: Update to 2.2.9.
* gnu/packages/cran.scm (r-psych): Update to 2.2.9.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus edfc9661f7
gnu: r-rmysql: Update to 0.10.24.
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.24.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 31b161122c
gnu: r-timedate: Update to 4021.106.
* gnu/packages/cran.scm (r-timedate): Update to 4021.106.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus e17d8388ef
gnu: r-lava: Update to 1.7.0.
* gnu/packages/cran.scm (r-lava): Update to 1.7.0.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 43495bfdd7
gnu: r-lpsolve: Update to 5.6.17.
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.17.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 147b677f9c
gnu: r-pkgload: Update to 1.3.1.
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.1.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus d517942bdd
gnu: r-ps: Update to 1.7.2.
* gnu/packages/cran.scm (r-ps): Update to 1.7.2.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 5a062d7004
gnu: r-paletteer: Update to 1.5.0.
* gnu/packages/cran.scm (r-paletteer): Update to 1.5.0.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 63265ec416
gnu: r-amap: Update to 0.8-19.
* gnu/packages/cran.scm (r-amap): Update to 0.8-19.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 455dde60c3
gnu: r-mapproj: Update to 1.2.9.
* gnu/packages/cran.scm (r-mapproj): Update to 1.2.9.
2022-11-04 10:01:07 +01:00
Ricardo Wurmus 72c23c8139
gnu: r-maps: Update to 3.4.1.
* gnu/packages/cran.scm (r-maps): Update to 3.4.1.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 68448c3e5f
gnu: r-mbess: Update to 4.9.2.
* gnu/packages/cran.scm (r-mbess): Update to 4.9.2.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 3ab86d3ee4
gnu: r-rstpm2: Update to 1.5.8.
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.8.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 70f519bcfb
gnu: r-curl: Update to 4.3.3.
* gnu/packages/cran.scm (r-curl): Update to 4.3.3.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 5e725bee3c
gnu: r-jsonlite: Update to 1.8.3.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.3.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 022c69777c
gnu: r-vegan: Update to 2.6-4.
* gnu/packages/cran.scm (r-vegan): Update to 2.6-4.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 850c72034b
gnu: r-sys: Update to 3.4.1.
* gnu/packages/cran.scm (r-sys): Update to 3.4.1.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus eb14bfe02e
gnu: r-ga: Update to 3.2.3.
* gnu/packages/cran.scm (r-ga): Update to 3.2.3.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 384f203909
gnu: r-ggpmisc: Update to 0.5.1.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.1.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus f197b56e7a
gnu: r-ggpp: Update to 0.4.5.
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.5.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 80a8b165f8
gnu: r-fontawesome: Update to 0.4.0.
* gnu/packages/cran.scm (r-fontawesome): Update to 0.4.0.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus 34a4492c7b
gnu: r-dbscan: Update to 1.1-11.
* gnu/packages/cran.scm (r-dbscan): Update to 1.1-11.
2022-11-04 10:01:06 +01:00
Ricardo Wurmus d0a0b5b989
gnu: r-datawizard: Update to 0.6.3.
* gnu/packages/cran.scm (r-datawizard): Update to 0.6.3.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus e3b8b3117c
gnu: r-collections: Update to 0.3.6.
* gnu/packages/cran.scm (r-collections): Update to 0.3.6.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus 1b0fea29a0
gnu: r-dyngen: Update to 1.0.5.
* gnu/packages/bioinformatics.scm (r-dyngen): Update to 1.0.5.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus 34b78bce57
gnu: r-valr: Update to 0.6.6.
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.6.
[propagated-inputs]: Add r-cli.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus 987fd48c82
gnu: r-gstat: Update to 2.1-0.
* gnu/packages/cran.scm (r-gstat): Update to 2.1-0.
[propagated-inputs]: Add r-sf, r-sftime, and r-stars.
[description]: Reformat.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus 20d86e2819
gnu: r-torch: Update to 0.9.0.
* gnu/packages/cran.scm (r-torch): Update to 0.9.0.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus 2766235f30
gnu: liblantern: Update to 0.9.0.
* gnu/packages/machine-learning.scm (liblantern): Update to 0.9.0.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus 90d7dd1967
gnu: python-pytorch-for-r-torch: Update to 1.12.1.
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Update to
1.12.1.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus b149f6c123
gnu: r-arrow: Update to 10.0.0.
* gnu/packages/cran.scm (r-arrow): Update to 10.0.0.
[propagated-inputs]: Add r-glue.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus 2db2a92760
gnu: apache-arrow: Update to 10.0.0.
* gnu/packages/databases.scm (apache-arrow): Update to 10.0.0.
(python-pyarrow)[arguments]: Remove 'patch-cmake-variables phase; do not
bundle headers.
[propagated-inputs]: Do not use labels.
[native-inputs]: Remove labels.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus d206b29c29
gnu: apache-arrow: Do not use %build-inputs.
* gnu/packages/databases.scm (apache-arrow)[arguments]: Do not use
%build-inputs, bind inputs instead.
2022-11-04 10:01:05 +01:00
Ricardo Wurmus d0b7ad1ce5
gnu: Add r-sftime.
* gnu/packages/cran.scm (r-sftime): New variable.
2022-11-04 10:01:04 +01:00
Ricardo Wurmus 71a0f7f542
gnu: Add r-ca.
* gnu/packages/cran.scm (r-ca): New variable.
2022-11-04 10:01:04 +01:00
Ontje Lünsdorf 41cb392544
gnu: Add paraview 5.9.1.
* gnu/packages/image-processing.scm (paraview-5.9): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-11-04 10:01:04 +01:00
Thiago Jung Bauermann a75deb8844
system: image: Define correct docker image arch when cross building
Cross-building a docker image with:

  $ guix system image --image-type=docker --target=aarch64-linux-gnu os.scm

results in an image where the architecture declared in its config.json is
the host architecture rather than the target one.  The binaries are
correctly cross-compiled, so the image can be loaded and used despite the
warning message shown by docker:

  $ docker load -i vcal7bvsqcijchifhqdvprpd1niqh8sk-docker-image.tar.gz
  Loaded image: guix:latest
  $ docker create guix:latest
  WARNING: The requested image's platform (linux/amd64) does not match the
  detected host platform (linux/arm64/v8) and no specific platform was
  requested
  40f06aa869ed690489c4a3824a7f7721bd4bf453b85f25ac7199266939fe2fba
  $ echo $?
  0

This is fixed by passing the correct triplet to the build-docker-image
function.

* gnu/system/image.scm (system-docker-image) Add ‘image-target’ variable.
[builder]: Pass ‘#:system’ argument to ‘build-docker-image’.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-11-04 08:46:11 +01:00