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113835 Commits (626b010f1a2c261c9e572acb28d1d7401890eeba)

Author SHA1 Message Date
Efraim Flashner e287a0e402
gnu: gnutls: Don't embed a phase inside another phase.
* gnu/packages/tls.scm (gnutls)[arguments]: Adjust powerpc-linux phase
'increase-test-timeout to not be embedded inside another phase.
2023-04-25 23:32:17 +03:00
Efraim Flashner ccf64b6a8b
gnu: mpdevil: Add missing input.
* gnu/packages/mpd.scm (mpdevil)[native-inputs]: Add gettext-minimal.
2023-04-25 23:08:45 +03:00
Efraim Flashner aeda325cf1
gnu: presage: Build with c++-14.
* gnu/packages/fcitx.scm (presage)[arguments]: Adjust configure-flags to
use c++-14 cor CFLAGS and CXXFLAGS.
2023-04-25 23:01:56 +03:00
Efraim Flashner 97323e5262
gnu: libpst: Fix python detection.
* gnu/packages/mail.scm (libpst)[arguments]: Add a phase to detect newer
versions of python3.
[native-inputs]: Add autoconf, automake, gettext-minimal, libool.
2023-04-25 22:52:29 +03:00
Ricardo Wurmus 72b1c9713b
gnu: perl-data-dumper: Update to 2.183.
* gnu/packages/perl.scm (perl-data-dumper): Update to 2.183.
2023-04-25 21:18:36 +02:00
Ricardo Wurmus 4598928a90
gnu: cwltool: Use pyproject-build-system.
"setup.py install is deprecated. Use build and pip and other standards-based
tools."  It then falls back to attempting to install packages via pip.

* gnu/packages/bioinformatics.scm (cwltool)[build-system]: Use
pyproject-build-system.
2023-04-25 21:18:36 +02:00
Ricardo Wurmus 92a903499b
gnu: python-schema-salad: Use pyproject-build-system.
The python-build-system fails with "setuptools.installer is
deprecated. Requirements should be satisfied by a PEP 517 installer."  This,
in turn, causes all Python packages to be ignored and "pip install" to be
invoked for them.

* gnu/packages/bioinformatics.scm (python-schema-salad)[build-system]: Use
pyproject-build-system.
2023-04-25 21:18:35 +02:00
Liliana Marie Prikler 2ec69787aa
gnu: gfeeds: Add missing gettext-minimal.
* gnu/packages/syndication.scm (gfeeds)[inputs]: Add gettext-minimal.
2023-04-25 21:09:13 +02:00
Liliana Marie Prikler 30a252760f
gnu: syndication-domination: Update to 1.0-1-7592032.
* gnu/packages/syndication.scm (syndication-domination): Update to
1.0-1-7592032.
2023-04-25 21:09:13 +02:00
Liliana Marie Prikler ff777165cb
gnu: evolution: Update to 3.46.4.
* gnu/packages/gnome.scm (evolution): Update to 3.46.4.
2023-04-25 21:09:13 +02:00
Liliana Marie Prikler 916df2b9eb
gnu: evolution-data-server: Update to 3.46.4.
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.46.4.
2023-04-25 21:09:12 +02:00
Ricardo Wurmus 5a1b246736
gnu: adapterremoval: Update to 2.3.3.
* gnu/packages/bioinformatics.scm (adapterremoval): Update to 2.3.3.
[arguments]: Simplify.
[inputs]: Reformat.
2023-04-25 19:46:29 +02:00
Efraim Flashner d67b8788b3
gnu: ocaml-lwt: Add ocaml4.07 variant.
* gnu/packages/ocaml.scm (ocaml-lwt)[properties]: New field.
(ocaml4.07-lwt): New variable.
2023-04-25 20:42:22 +03:00
Efraim Flashner 52f6ccef82
gnu: perl-crypt-openssl-rsa: Update to 0.33.
* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Update to 0.33.
2023-04-25 20:42:22 +03:00
Ricardo Wurmus fc80efe1a0
gnu: bedtools-2.18: Fix build.
* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Fix operators in
'compatibility phase.
2023-04-25 19:41:05 +02:00
Ricardo Wurmus f2e90d6f43
gnu: hisat: Build with GCC 10.
* gnu/packages/bioinformatics.scm (hisat)[native-inputs]: Add gcc-10.
2023-04-25 19:30:43 +02:00
Ricardo Wurmus 0a4fa99b39
gnu: kallisto: Update to 0.48.0.
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.48.0.
[arguments]: Remove trailing #T from build phase.
2023-04-25 19:28:42 +02:00
Ricardo Wurmus 7ae5325bf1
gnu: bpp-core: Build with GCC 10.
* gnu/packages/bioinformatics.scm (bpp-core)[native-inputs]: Add gcc-10.
2023-04-25 19:12:57 +02:00
Ricardo Wurmus 2c09cc19e6
gnu: vcflib: Update to 1.0.9.
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.9.
[source]: Update snippet.
[inputs]: Add curl, pybind11, and wfa2-lib.
[arguments]: Adjust and reformat.
2023-04-25 19:10:19 +02:00
Ricardo Wurmus 4ad51f5914
gnu: tabixpp: Update to 1.1.2.
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.2.
[source]: Simplify snippet.
[inputs]: Add curl.
[arguments]: Simplify and reformat.
2023-04-25 19:10:19 +02:00
Ricardo Wurmus 8664c6230e
gnu: Add wfa2-lib.
* gnu/packages/bioinformatics.scm (wfa2-lib): New variable.
2023-04-25 19:10:18 +02:00
Josselin Poiret 8c5ba69d6e
gnu: biber: Fix build with new Perl.
* gnu/packages/patches/biber-adapt-perl-5.36.patch: Backport patch from
upstream's 760e6e4ec08a3097f7e6136331541a7b8c1c9df7.
* gnu/packages/tex.scm (biber): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-25 18:42:22 +02:00
Vivien Kraus 74038cf66e
gnu: gcc: Do not build gcov on MinGW.
* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Disable gcov when
targetting mingw.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:20:19 +02:00
Nicolas Graves 7f0fbd0463
gnu: nerd-dictation: Add package variants.
* gnu/packages/machine-learning.scm (nerd-dictation)[inputs]: Remove.
(nerd-dictation-gexp): New procedure.
(nerd-dictation/xdotool, nerd-dictation/sox-xdotool)
(nerd-dictation/sox-ydotool, nerd-dictation/sox-wtype): New variables

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:19:21 +02:00
Bruno Victal 9be1ee6a49
services: tor: Deprecate 'tor-hidden-service' procedure.
Due to (now renamed) 'hidden-service' record type not being exported, the only
way Onion services (formely hidden services) could have worked is through the
now deprecated 'tor-hidden-service' procedure.

This commit updates the Tor service documentation, corrects some inconsistently
named accessors in <tor-configuration> record-type, renames and refactors
tor-hidden-service-configuration to tor-onion-service-configuration using
define-configuration and also exports it, allowing Onion services to be
configured directly within a <tor-configuration> record.
Lastly, it also deprecates the 'tor-hidden-service' procedure.

* doc/guix.texi (Networking Services): Substitute mentions of “Hidden services”
with “Onion Services”. Add a Tor Onion service configuration example.
Document <tor-onion-service-configuration>. Remove mention of
'tor-hidden-service' procedure.
* gnu/services/networking.scm: Export tor-configuration-tor,
tor-configuration-config-file, tor-configuration-hidden-services,
tor-configuration-socks-socket-type, tor-configuration-control-socket-path,
tor-onion-service-configuration, tor-onion-service-configuration?,
tor-onion-service-configuration-name, tor-onion-service-configuration-mapping.
(<tor-configuration>)[control-socket?]: Rename accessor.
(<hidden-service>): Replace with …
(<tor-onion-service-configuration>): … this.
(tor-configuration->torrc): Update record-type name.
(tor-activation): Ditto.
(tor-hidden-service-type): Remove variable.
(tor-hidden-service): Deprecate procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:19:21 +02:00
Lars-Dominik Braun c354a345b9
gnu: ghc-8.10: Avoid testsuite timeouts on i686.
* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Add new phase
'skip-failing-tests-i686-cuirass.
2023-04-25 16:54:57 +02:00
Ricardo Wurmus 3a37e3ecd8
gnu: lofreq: Set file timestamps to 1980s.
This keeps Python from complaining: "ZIP does not support timestamps before
1980".

* gnu/packages/bioinformatics.scm (lofreq)[arguments]: Add build phase
'set-source-file-times-to-1980.
2023-04-25 16:17:49 +02:00
Ricardo Wurmus 0ad4a4d155
gnu: lofreq: Drop input labels.
* gnu/packages/bioinformatics.scm (lofreq)[inputs]: Drop package labels.
2023-04-25 16:17:49 +02:00
Ricardo Wurmus 1fca85cd88
gnu: ivar: Update to 1.4.2.
* gnu/packages/bioinformatics.scm (ivar): Update to 1.4.2.
[arguments]: Remove -Werror flag.
2023-04-25 16:17:49 +02:00
Ricardo Wurmus f69f346289
gnu: propeller-gcc-4: Use MODIFY-INPUTS.
* gnu/packages/embedded.scm (propeller-gcc-4)[native-inputs]: Use
MODIFY-INPUTS and drop package label.
2023-04-25 16:17:49 +02:00
Ricardo Wurmus b9162199b3
gnu: propeller-gcc-4: Use G-expression.
* gnu/packages/embedded.scm (propeller-gcc-4)[arguments]: Use G-expression
because the parent GCC package uses them too.
2023-04-25 16:17:49 +02:00
Andreas Enge b380fbca88
gnu: trurl: Correct inputs.
* gnu/packages/curl.scm (trurl): Replace non-existant input curl-7.84.0 by
curl, which is version 7.85.0.
2023-04-25 15:21:05 +02:00
Andreas Enge c919bfefd9
Merge remote-tracking branch 'origin/master' into core-updates 2023-04-25 15:19:29 +02:00
Lars-Dominik Braun 472706ae2f
gnu: python-asyncssh: Update to 2.13.1.
Includes fix for python-cryptography>=39 disallowing SHA-1 signatures,
which caused the testsuite to fail.

* gnu/packages/ssh.scm (python-asyncssh): Update to 2.13.1.
2023-04-25 14:27:14 +02:00
Efraim Flashner 0daa747de2
gnu: alacritty: Patch reference to xdg-open.
* gnu/packages/terminals.scm (alacritty)[arguments]: Add a phase to add
an absolute reference to xdg-open.
[inputs]: Add xdg-utils.
2023-04-25 14:06:14 +03:00
Nicolas Goaziou 95787ffaa2
gnu: emacs-eshell-syntax-highlighting: Update to 0.5.
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to 0.5.
2023-04-25 11:47:52 +02:00
Nicolas Goaziou c9c4fea7c5
gnu: nethack: Update to 3.6.7.
* gnu/packages/games.scm (nethack): Update to 3.6.7.
2023-04-25 11:47:51 +02:00
Sharlatan Hellseher 11f078a1fb
gnu: Add trurl.
* gnu/packages/curl.scm (trurl): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 11:47:51 +02:00
Nicolas Goaziou 26cdc7be84
gnu: emacs-auctex: Update to 13.2.0.
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.0.
2023-04-25 11:47:51 +02:00
Joseph LaFreniere af3daff5ea
gnu: Add emacs-xonsh-mode.
* gnu/packages/emacs-xyz.scm (emacs-xonsh-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 11:47:51 +02:00
Ricardo Wurmus ce0bdceb49
gnu: python-importlib-resources: Update to 5.12.0.
* gnu/packages/python-xyz.scm (python-importlib-resources): Update to 5.12.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase to avoid "pip install".
[native-inputs]: Remove python-toml; add python-flake8, python-pytest,
python-pytest-black, python-pytest-checkdocs, python-pytest-cov,
python-pytest-enabler, python-pytest-flake8, python-pytest-mypy, and
python-setuptools-57.
[propagated-inputs]: Add python-zipp.
2023-04-25 11:32:10 +02:00
Christopher Baines 8a5b6d5382
gnu: guix-build-coordinator: Update to 0-79.6a4e827.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-79.6a4e827.
2023-04-25 10:25:55 +01:00
Antero Mejr a50f0dc5ca
gnu: schismtracker: Update to 20221201.
* gnu/packages/music.scm (schismtracker): Update to 20221201.
[source]: Convert snippet to gexp.
[arguments]: Convert to gexp, add configure flags for FLAC and Wayland
support.
[inputs]: Remove libx11, libxext, and sdl; add flac and sdl2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-04-25 10:25:55 +01:00
Lars-Dominik Braun 54771a5b6a
gnu: python-anyio: Upgrade to 3.6.2.
* gnu/packages/python-xyz.scm (python-anyio): Upgrade to 3.6.2.
2023-04-25 11:08:32 +02:00
Lars-Dominik Braun e619750d00
Revert "gnu: python-pytest-trio: Update to 0.8.0."
Not compatible with python-trio 0.8.

This reverts commit 27a4bfbd07.
2023-04-25 11:08:30 +02:00
Lars-Dominik Braun 27e1451891
gnu: python-trio: Downgrade to 0.21.
Version 0.22 deprecates MultiError, which trips up testsuites of
dependents. python-anyio for instance is explicitly not compatible with >=
0.22, so stick to an older release.

* gnu/packages/python-xyz.scm (python-trio): Downgrade to 0.21.
[arguments]: Disable failing test.
2023-04-25 11:08:29 +02:00
Pierre Neidhardt ffb7ea6b63
gnu: sbcl-serapeum: Update to 20230423.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230423.
2023-04-25 10:44:16 +02:00
Pierre Neidhardt 2ebe270927
gnu: sbcl-njson: Update to 1.0.0.
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.0.0.
2023-04-25 10:37:13 +02:00
Efraim Flashner 08c63aac53
gnu: slimevolley: Build with gcc-7.
* gnu/packages/games.scm (slimevolley)[native-inputs]: Add gcc-7.
2023-04-25 10:32:46 +03:00
Ricardo Wurmus 8495069bed
gnu: scribus: Fix build with latest poppler.
* gnu/packages/patches/scribus-1.5.8-poppler-22.03.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.04.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.09.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-1.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/scribus.scm (scribus)[source]: Add patches.
[arguments]: Enable WANT_CPP17 option.
2023-04-25 06:17:16 +02:00