6c16eb24d1
gnu: grep: Skip failing tests on GNU/Hurd.
...
* gnu/packages/base.scm (grep)[arguments]: Add #:make-flags.
2022-10-28 01:27:22 +02:00
842b73fd2b
gnu: coreutils: Skip failing tests on GNU/Hurd.
...
* gnu/packages/base.scm (coreutils)[arguments]: Add
"tests/df/unreadable.sh" and "test-perror2" to the 'XFAIL_TESTS' list.
2022-10-28 01:27:21 +02:00
ac51b9c86d
gnu: swftools: Fix typos.
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* gnu/packages/animation.scm (swftools)[description]: Avoid uses of "allows
to".
2022-10-27 14:13:17 -07:00
f8ce707252
gnu: pypy: Remove unused module imports.
...
This is a follow-up to commit 6e7ed04033
2022-10-27 21:38:56 +02:00
e944734ef9
build-system/pyproject: Always run tests verbosely for supported backends.
...
* guix/build-system/pyproject.scm (pyproject-build): Default to '() instead of
#false for TEST-FLAGS.
* guix/build/pyproject-build-system.scm (check): Unconditionally enable
verbose test flags.
* doc/guix.texi (Build Systems): Document this change.
* gnu/packages/fontutils.scm (python-glyphslib)[arguments]: Remove verbosity
from #:test-flags.
* gnu/packages/pdf.scm (python-pydyf, weasyprint)[arguments]: Likewise.
* gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]: Likewise.
* gnu/packages/python-xyz.scm (python-path, python-tempora)[arguments]: Likewise.
2022-10-27 21:30:03 +02:00
6ef998d54e
build-system/pyproject: Adjust indentation.
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* guix/build/pyproject-build-system.scm: Adjust indentation.
2022-10-27 21:30:03 +02:00
f928abac36
gnu: python-deepmerge: Use pyproject-build-system.
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* gnu/packages/python-xyz.scm (python-deepmerge)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:08 +02:00
7b83b3a77c
gnu: python-scikit-build: Switch to pyproject-build-system.
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* gnu/packages/python-xyz.scm (python-scikit-build)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:08 +02:00
9ffbcb8a06
gnu: python-cattrs: Use pyproject-build-system.
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* gnu/packages/python-xyz.scm (python-cattrs)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
d2e88c383b
gnu: python-path: Use pyproject-build-system.
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* gnu/packages/python-xyz.scm (python-path-bootstrap)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
(python-path): Remove #:phases. Add #:test-flags.
2022-10-27 19:43:08 +02:00
5e17453f18
gnu: python-openapi-spec-validator: Use pyproject-build-system.
...
* gnu/packages/python-web.scm (python-openapi-spec-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
3c685772de
gnu: python-openapi-schema-validator: Use pyproject-build-system.
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* gnu/packages/python-web.scm (python-openapi-schema-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:08 +02:00
7b499ef116
gnu: zabbix-cli: Switch to pyproject-build-system.
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* gnu/packages/monitoring.scm (zabbix-cli)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove check phase.
2022-10-27 19:43:08 +02:00
e05e2a7a75
gnu: python-pygmsh: Use pyproject-build-system.
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* gnu/packages/simulation.scm (python-pygmsh)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
b8efe89eb4
gnu: python-tempora: Switch to pyproject-build-system.
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* gnu/packages/python-xyz.scm (python-tempora)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
8bdc4c1547
gnu: python-mypy-protobuf: Switch to pyproject-build-system.
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* gnu/packages/protobuf.scm (python-mypy-protobuf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
eecc807ea4
gnu: python-ufolib2: Use pyproject-build-system.
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* gnu/packages/fontutils.scm (python-ufolib2)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:07 +02:00
10f8534929
gnu: python-statmake: Use pyproject-build-system.
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* gnu/packages/fontutils.scm (python-statmake)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
6f6257a6bc
gnu: python-glyphslib: Use pyproject-build-system.
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* gnu/packages/fontutils.scm (python-glyphslib)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
2022-10-27 19:43:07 +02:00
df095a1813
gnu: weasyprint: Use pyproject-build-system.
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* gnu/packages/pdf.scm (weasyprint)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases. Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
4c8e0b3274
gnu: python-pydyf: Use pyproject-build-system.
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* gnu/packages/pdf.scm (python-pydyf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases. Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
ee1f51011c
gnu: python-autopage: Use pyproject-build-system.
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* gnu/packages/python-xyz.scm (python-autopage)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
2022-10-27 19:43:07 +02:00
a4fd4db6d1
news: Add entry for 'pyproject-build-system'.
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* etc/news.scm: Add entry.
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Co-authored-by: Julien Lepiller <julien@lepiller.eu>
2022-10-27 19:43:07 +02:00
400a7a4c80
build-system: Add pyproject-build-system.
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This is an experimental build system based on python-build-system
that implements PEP 517-compliant builds.
* doc/guix.texi (Build Systems): Add pyproject-build-system section.
* doc/contributing.texi (Python Modules): Mention pyproject.toml and the
PYTHON-TOOLCHAIN package, as well as differences to python-build-system.
* guix/build-system/pyproject.scm,
guix/build/pyproject-build-system.scm,
gnu/packages/aux-files/python/sanity-check-next.py,
gnu/packages/python-commencement.scm: New files.
* Makefile.am (MODULES): Register the new build systems.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add python-commencement.scm.
* gnu/packages/python.scm (python-sans-pip, python-sans-pip-wrapper): New
variables.
Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
b4e2effb30
gnu: python-pip: Move to (gnu packages python-build).
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* gnu/packages/python-xyz.scm (python-pip): Move from here ...
* gnu/packages/python-build.scm (python-pip): ... to here.
2022-10-27 19:43:06 +02:00
6e7ed04033
gnu: pypy: Move to separate module.
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This removes the need to import (gnu packages python-xyz) in (gnu packages
python), avoiding issues with circular imports.
* gnu/packages/python.scm (pypy): Move…
* gnu/packages/pypy.scm (pypy): …here
* gnu/local.mk: Register new file.
Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
c485a9d8af
gnu: python-setuptools: Move to python-build.
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* gnu/packages/python-xyz.scm (python-setuptools): Move…
* gnu/packages/python-build.scm: …here.
* gnu/packages/chemistry.scm,
gnu/packages/messaging.scm,
gnu/packages/sequoia.scm,
tests/lint.scm: Adjust module imports accordingly.
Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-27 19:43:06 +02:00
cae327a3b0
gnu: Zabbix: Update to 6.0.9.
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* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.9.
2022-10-27 19:43:06 +02:00
593548f063
gnu: zabbix-agentd: Enable TLS support.
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* gnu/packages/monitoring.scm (zabbix-agentd)[arguments]: Pass "--with-gnutls"
in #:configure-flags.
[inputs]: Add GNUTLS.
(zabbix-server): Inherit these changes.
2022-10-27 19:43:06 +02:00
176a501360
gnu: flair: Add missing R packages.
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* gnu/packages/bioinformatics.scm (flair)[propagated-inputs]: Add python-rpy2.
[inputs]: Add r-minimal, r-deseq2, r-drimseq, r-ggplot2, r-lazyeval, r-qqman,
and r-rlang.
[arguments]: Add phase "wrap-executable".
2022-10-27 18:21:22 +02:00
302eae2fc3
gnu: emacs-buttercup: Update to 1.28.
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* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.28.
2022-10-27 17:37:40 +02:00
aef2425666
gnu: Add r-aseb.
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* gnu/packages/bioconductor.scm (r-aseb): New variable.
2022-10-27 16:40:18 +02:00
695d7720ef
gnu: Add r-asgsca.
...
* gnu/packages/bioconductor.scm (r-asgsca): New variable.
2022-10-27 16:40:18 +02:00
b8b91756ab
gnu: Add r-aspli.
...
* gnu/packages/bioconductor.scm (r-aspli): New variable.
2022-10-27 16:40:18 +02:00
a8e0069f87
gnu: Add r-assessorf.
...
* gnu/packages/bioconductor.scm (r-assessorf): New variable.
2022-10-27 16:40:18 +02:00
f1750236c1
gnu: Add r-asset.
...
* gnu/packages/bioconductor.scm (r-asset): New variable.
2022-10-27 16:40:18 +02:00
c0278aa51e
gnu: Add r-atena.
...
* gnu/packages/bioconductor.scm (r-atena): New variable.
2022-10-27 16:40:18 +02:00
70d30096b3
gnu: Add r-atsnp.
...
* gnu/packages/bioconductor.scm (r-atsnp): New variable.
2022-10-27 16:40:18 +02:00
599655dc49
gnu: Add r-attract.
...
* gnu/packages/bioconductor.scm (r-attract): New variable.
2022-10-27 16:40:18 +02:00
3f755098cb
gnu: Add r-awfisher.
...
* gnu/packages/bioconductor.scm (r-awfisher): New variable.
2022-10-27 16:40:18 +02:00
930b1e0458
gnu: Add r-awst.
...
* gnu/packages/bioconductor.scm (r-awst): New variable.
2022-10-27 16:40:18 +02:00
d9686315bd
gnu: ungoogled-chromium: Update to 107.0.5304.68-1.
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* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M107.
(%chromium-version): Set to 107.0.5304.68.
(%ungoogled-origin): Update hash.
(%chromium-gcc-patchset, gcc-patch): Remove.
(%gcc-patches): Empty list.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Add clang_base_path and use_system_libwayland_server to
#:configure-flags. Adjust substitutions.
[inputs]: Add QTBASE-5.
2022-10-27 16:15:09 +02:00
38cc09493c
gnu: Add r-barcodetrackr.
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* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
2022-10-27 15:58:45 +02:00
01944e0eb8
gnu: Add r-banocc.
...
* gnu/packages/bioconductor.scm (r-banocc): New variable.
2022-10-27 15:57:30 +02:00
fe2be9c0cf
gnu: Add r-bandits.
...
* gnu/packages/bioconductor.scm (r-bandits): New variable.
2022-10-27 15:56:40 +02:00
9b337c2735
gnu: Add r-bambu.
...
* gnu/packages/bioconductor.scm (r-bambu): New variable.
2022-10-27 15:51:55 +02:00
f0d0b6a0c5
gnu: Add r-badregionfinder.
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* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
2022-10-27 15:50:33 +02:00
c969517cec
gnu: Add r-bader.
...
* gnu/packages/bioconductor.scm (r-bader): New variable.
2022-10-27 15:35:22 +02:00
0ad89a84c3
gnu: Add r-bac.
...
* gnu/packages/bioconductor.scm (r-bac): New variable.
2022-10-27 15:34:01 +02:00
f31b494bb6
gnu: Add r-basespacer.
...
* gnu/packages/bioconductor.scm (r-basespacer): New variable.
2022-10-27 15:30:25 +02:00
Ludovic Courtès
Vagrant Cascadian
Marius Bakke
Lars-Dominik Braun
Ricardo Wurmus
Nicolas Goaziou
Mădălin Ionel Patrașcu