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Author SHA1 Message Date
Mark H Weaver
647888845c
Merge branch 'master' into core-updates 2018-03-20 00:49:05 -04:00
Tobias Geerinckx-Rice
c657716ede
gnu: dnsmasq: Fix description typos. 
* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.
 2018-03-20 02:03:52 +01:00
Tobias Geerinckx-Rice
4e6c51d4eb
gnu: dnsmasq: Update to 2.79. 
* gnu/packages/dns.scm (dnsmasq): Update to 2.79.
 2018-03-20 02:03:52 +01:00
Marius Bakke
a3e2b72ca9
gnu: certbot: Update to 0.22.1. 
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.
 2018-03-20 01:40:07 +01:00
Marius Bakke
818e6d9704
gnu: python-cryptography: Update to 2.2. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.
 2018-03-20 01:25:10 +01:00
Marius Bakke
c9838530d3
gnu: imlib2: Update to 1.5.1. 
* gnu/packages/image.scm (imlib2): Update to 1.5.1.
 2018-03-20 01:24:48 +01:00
Marius Bakke
264cb77646
gnu: imagemagick: Update to 6.9.9-39. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.
 2018-03-20 01:09:16 +01:00
Marius Bakke
0d729c5b14
gnu: zziplib: Correct license. 
* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.
 2018-03-20 01:06:43 +01:00
Marius Bakke
3f986ff657
gnu: zziplib: Update to 0.13.69. 
* gnu/packages/compression.scm (zziplib): Update to 0.13.69.
[home-page]: Use new GitHub home.
[source](uri): Adjust accordingly.
[arguments]: Remove.
 2018-03-20 00:56:04 +01:00
Marius Bakke
712be306a8
gnu: rofi: Update to 1.5.1. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.
 2018-03-20 00:34:00 +01:00
Leo Famulari
d41ad1d553
gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490]. 
* gnu/packages/web.scm (uwsgi): Update to 2.0.17.
[source]: Use HTTPS URL.
 2018-03-19 18:56:26 -04:00
Ludovic Courtès
cfbf6de18c
gnu: mcron: Update to 1.1 and deprecate "mcron2". 
* gnu/packages/guile.scm (mcron): Update to 1.1.
[native-inputs]: Add TZDATA-FOR-TESTS.
[arguments]: New field.
(mcron2): Define using 'deprecated-package'.
* gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'.
* doc/guix.texi (Scheduled Job Execution): Likewise.
* gnu/tests/base.scm (%mcron-os): Remove comment about mcron2.
 2018-03-19 23:19:49 +01:00
Mark H Weaver
f88028c432
gnu: linux-libre: Update to 4.15.11. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11.
(%linux-libre-hash): Update hash.
 2018-03-19 18:02:29 -04:00
Mark H Weaver
dd07a549d0
gnu: linux-libre@4.14: Update to 4.14.28. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28.
(%linux-libre-4.14-hash): Update hash.
 2018-03-19 18:01:49 -04:00
Mark H Weaver
cc367c7c7a
gnu: linux-libre@4.9: Update to 4.9.88. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88.
 2018-03-19 18:01:12 -04:00
Mark H Weaver
75abeb73e3
gnu: linux-libre@4.4: Update to 4.4.122. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122.
 2018-03-19 18:00:37 -04:00
Tobias Geerinckx-Rice
9010123565
gnu: weechat: Update to 2.1. 
* gnu/packages/irc.scm (weechat): Update to 2.1.
 2018-03-19 22:26:41 +01:00
Tobias Geerinckx-Rice
1d9b041c2e
gnu: perl-xml-compile-soap: Update to 3.24. 
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.
 2018-03-19 22:26:41 +01:00
Tobias Geerinckx-Rice
fa3fff430b
gnu: perl-xml-simple: Update to 2.25. 
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.
 2018-03-19 22:26:40 +01:00
Tobias Geerinckx-Rice
8d0d14479d
gnu: perl-math-random-secure: Fix typo. 
* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix
the spelling of ‘millennia’.
 2018-03-19 22:26:30 +01:00
Ricardo Wurmus
9dbdc830f6
gnu: pigx-bsseq: Update to 0.0.7. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.
 2018-03-19 21:06:51 +01:00
Ricardo Wurmus
096589035e
gnu: bismark: Fix references to gunzip. 
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
 2018-03-19 21:06:51 +01:00
Ricardo Wurmus
51237011bf
gnu: pigx-scrnaseq: Update to 0.0.3. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3.
[inputs]: Add coreutils and perl.
 2018-03-19 21:06:50 +01:00
Efraim Flashner
203631d9ad
patchelf: Use 'https' for source uri. 
* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
 2018-03-19 21:48:43 +02:00
Leo Famulari
9687d4042a
gnu: python-paramiko: Update to 2.1.5. 
* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko):
Update to 2.1.5.
 2018-03-19 14:34:55 -04:00
Tobias Geerinckx-Rice
fe15613cdf
gnu: perl-net-ssleay: Update to 1.85. 
* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.85.
 2018-03-19 19:27:41 +01:00
Tobias Geerinckx-Rice
b824534bb8
gnu: perl-http-message: Update to 6.15. 
* gnu/packages/web.scm (perl-http-message): Update to 6.15.
[source]: Update URI.
[native-inputs]: Add perl-try-tiny.
 2018-03-19 19:27:40 +01:00
Tobias Geerinckx-Rice
a768e41523
gnu: r-minimal, r: Update to 3.4.4. 
There seem to be no dependency updates as far as I could find.

* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.
 2018-03-19 19:22:32 +01:00
Leo Famulari
6969ad0edd
gnu: python-pynacl: Update to 1.2.0. 
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0.
[native-inputs]: Add python-hypothesis.
 2018-03-19 12:37:51 -04:00
Ricardo Wurmus
d8f08c85ad
gnu: pigx: Update to 0.0.2. 
* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.
 2018-03-19 16:55:43 +01:00
Ricardo Wurmus
d93a1c276b
gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1. 
* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
 2018-03-19 16:55:43 +01:00
Tobias Geerinckx-Rice
504be7db58
gnu: bash-completion: Update to 2.8. 
* gnu/packages/bash.scm (bash-completion): Update to 2.8.
* gnu/packages/patches/bash-completion-directories.patch: Update context.
 2018-03-19 14:44:13 +01:00
Tobias Geerinckx-Rice
39c6af4774
gnu: hdparm: Update to 9.55. 
* gnu/packages/linux.scm (hdparm): Update to 9.55.
 2018-03-19 14:41:47 +01:00
Tobias Geerinckx-Rice
eaa69a7996
gnu: libtirpc: Update to 1.0.3. 
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3.
[source]: Remove patch.
* gnu/packages/patches/libtirpc-missing-headers.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-03-19 13:25:27 +01:00
Tobias Geerinckx-Rice
86ce44c503
gnu: libtirpc: Always return #t from phases. 
* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t.
 2018-03-19 13:25:26 +01:00
Tobias Geerinckx-Rice
12c069dbcf
gnu: perl-file-basedir: Update to 0.08. 
* gnu/packages/freedesktop.scm (perl-file-basedir): Update to 0.08.
 2018-03-19 13:25:26 +01:00
Tobias Geerinckx-Rice
0f7514580b
gnu: enlightenment: Update to 0.22.2. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.2.
 2018-03-19 13:24:28 +01:00
Tobias Geerinckx-Rice
ad19762859
gnu: python-oslo.utils: Update to 3.36.0. 
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.0.
 2018-03-19 13:24:28 +01:00
Tobias Geerinckx-Rice
207e4d2705
gnu: python-oslo.i18n: Update to 3.20.0. 
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.20.0.
 2018-03-19 13:24:28 +01:00
Tobias Geerinckx-Rice
bae598d6c9
gnu: r-withr: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.2.
 2018-03-19 13:24:27 +01:00
Efraim Flashner
9760061315
gnu: tilda: Update to 1.4.1. 
* gnu/packages/terminals.scm (tilda): Update to 1.4.1.
[arguments]: Rename 'autogen phase to 'bootstrap.  Clean up 'bootstrap
phase.
 2018-03-19 14:22:28 +02:00
Ricardo Wurmus
32b7ccf9b4
gnu: pigx-chipseq: Update to 0.0.8. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8.
[inputs]: Add python-magic, python-xlrd, and trim-galore.
[arguments]: Disable tests.
 2018-03-19 11:07:55 +01:00
Ricardo Wurmus
2915221bcb
gnu: pigx-scrnaseq: Use pandoc-1. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
 2018-03-19 11:07:55 +01:00
Ricardo Wurmus
9dcb4d22a4
gnu: pigx-bsseq: Use pandoc-1. 
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
 2018-03-19 11:07:55 +01:00
Ricardo Wurmus
fd757a8f21
gnu: pigx-chipseq: Use pandoc-1. 
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
 2018-03-19 11:07:55 +01:00
Ricardo Wurmus
1a29fc3ff9
gnu: pigx-rnaseq: Use pandoc-1. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
 2018-03-19 11:07:54 +01:00
Ricardo Wurmus
8c6117ee22
gnu: Add ghc-pandoc-citeproc-with-pandoc-1. 
* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable.
 2018-03-19 11:07:54 +01:00
Mark H Weaver
38ef437b0c
gnu: font-dejavu: Return #t from all phases. 
* gnu/packages/fonts.scm (font-dejavu)[arguments]: Return #t from
the 'install-conf' phase.
 2018-03-18 23:30:35 -04:00
Mark H Weaver
b5e530198a
gnu: qpdf: Return #t from all phases. 
* gnu/packages/pdf.scm (qpdf)[arguments]: Return #t from 'patch-paths' phase.
 2018-03-18 23:30:33 -04:00
Mark H Weaver
56f31a9fd5
gnu: guile-gdbm-ffi: Add support for gdbm-1.14. 
* gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

* gnu/packages/guile.scm (guile-gdbm-ffi)[inputs]: Move above arguments.  Add
the patch, and the 'patch' program.
[propagated-inputs]: Move above arguments.
[arguments]: In the builder, add code to apply the patch.
 2018-03-18 23:30:31 -04:00