348f1f7cb5
gnu: camlboot: Update to latest commit.
...
* gnu/packages/ocaml.scm (camlboot): Update to latest commit.
2021-11-21 04:14:49 +01:00
1a9665743b
gnu: perl-cworld-dekker: Use GUIX_PYTHONPATH.
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* gnu/packages/bioinformatics.scm (perl-cworld-dekker)[arguments]: Use
GUIX_PYTHONPATH.
2021-11-21 00:40:34 +01:00
664721422c
gnu: python-scanpy: Use GUIX_PYTHONPATH.
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* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
2021-11-21 00:39:57 +01:00
a22fb2d164
gnu: python-numpy: Alias to python-numpy-1.20.
...
Numpy 1.20 is required by numba and umap-learn. Attempts to rename numpy 1.20
to allow it to coexist with numpy 1.21 in the same environment have not been
successful.
* gnu/packages/python-xyz.scm (python-numpy): Rename to...
(python-numpy-next): ...this variable.
(python2-numpy): Use python-numpy-next package as parent.
(python-numpy-1.20): Inherit from python-numpy-next.
(python-numpy): New variable pointing to python-numpy-1.20.
(python-numba)[propagated-inputs]: Replace python-numpy-1.20 with
python-numpy.
2021-11-21 00:39:09 +01:00
55870e86d9
gnu: multiqc: Remove sanity check.
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* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Delete 'sanity-check phase.
2021-11-21 00:39:09 +01:00
e2ca652c98
gnu: multiqc: Use GUIX_PYTHONPATH.
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* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Replace PYTHONPATH
with GUIX_PYTHONPATH.
2021-11-21 00:39:05 +01:00
b2bfedcdb3
gnu: libmp4v2: Build with '-std=c++03'.
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* gnu/packages/video.scm (libmp4v2)[arguments]: Add #:configure-flags.
2021-11-20 23:11:45 +01:00
27ceda472a
gnu: python-qtconsole: Add dependency on python-pyqt.
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* gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Add
PYTHON-PYQT.
2021-11-20 23:11:45 +01:00
aaf210888c
vm: <virtual-machine> defaults to using 'qemu-minimal'.
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'qemu-minimal' is enough for system tests, which is the main (only?) use
of <virtual-machine>.
* gnu/system/vm.scm (<virtual-machine>)[qemu]: Default to QEMU-MINIMAL.
2021-11-20 23:11:44 +01:00
ce67634629
gnu: tcp-wrappers: Allow compilation with glibc 2.33.
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* gnu/packages/networking.scm (tcp-wrappers)[source]: Add 'snippet'.
2021-11-20 23:11:44 +01:00
83010a08bc
gnu: grafx2: Build with '-fcommon'.
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* gnu/packages/game-development.scm (grafx2)[arguments]: Add '-fcommon'
to #:make-flags.
2021-11-20 23:11:44 +01:00
c34bb6b310
gnu: grafx2: Add 'file-name' field to source.
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Without a file name ending in ".tgz" (or similar), the 'unpack' phase
wouldn't extract it (as implemented in commit
cfcead2e51
2021-11-20 23:11:44 +01:00
0846e7d326
gnu: Add ocaml-charinfo-width.
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* gnu/packages/ocaml.scm (ocaml4.07-charinfo-width): Replace with...
(ocaml-charinfo-width): ...this. Use latest ocaml package.
2021-11-20 19:39:57 +01:00
f9bf7de5b4
gnu: Add ocaml-gsl.
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* gnu/packages/ocaml.scm (ocaml4.07-gsl): Replace with...
(ocaml-gsl): ...this. Use latest ocaml package.
(ocaml4.07-gsl-1): Adapt accordingly.
2021-11-20 19:39:54 +01:00
0481810ebf
gnu: Add ocaml-fftw3.
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* gnu/packages/ocaml.scm (ocaml4.07-fftw3): Replace with...
(ocaml-fftw3) ...this. Use latest ocaml package.
2021-11-20 19:39:52 +01:00
e9d3f3656b
gnu: Add ocaml-lacaml.
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* gnu/packages/ocaml.scm (ocaml4.07-lacaml): Replace with...
(ocaml-lacaml): ...this. Use latest ocaml package.
2021-11-20 19:39:25 +01:00
c51667d52e
gnu: ledger: Remove failing test output.
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* gnu/packages/finance.scm (ledger)[source]: Add snippet to remove a failing
test.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-20 19:23:50 +01:00
89eb1f2a76
gnu: sdrangel: Update to 6.17.3.
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* gnu/packages/radio.scm (sdrangel): Update to 6.17.3.
[arguments]: Add 'fix-boost-compatibility' phase.
2021-11-20 19:18:44 +01:00
40239e23e8
gnu: linux-libre 5.10: Update to 5.10.80.
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* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.80.
(linux-libre-5.10-pristine-source): Update hash.
2021-11-20 13:15:11 -05:00
d2f5bc7da8
gnu: linux-libre: Update to 5.14.20.
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* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.20.
(linux-libre-5.14-pristine-source): Update hash.
2021-11-20 13:15:07 -05:00
4d02165992
gnu: opencpn: Update to 5.2.4.
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* gnu/packages/geo.scm (opencpn): Update to 5.2.4.
[arguments]: Update 'configure-flag' and 'fix-build' phase.
2021-11-20 18:23:15 +01:00
0a4656f1c1
gnu: ocaml-version: Update to 3.4.0.
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* gnu/packages/ocaml.scm (ocaml-version): Update to 3.4.0.
2021-11-20 17:09:03 +01:00
4378eb9a15
gnu: ocaml-tyxml: Update to 4.5.0.
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* gnu/packages/ocaml.scm (ocaml-tyxml): Update to 4.5.0.
2021-11-20 17:08:55 +01:00
c2242284ab
gnu: ocaml-topkg: Update to 1.0.4.
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* gnu/packages/ocaml.scm (ocaml-topkg): Update to 1.0.4.
2021-11-20 17:08:50 +01:00
972c6fe87b
gnu: ocaml-stdlib-shims: Update to 0.3.0.
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* gnu/packages/ocaml.scm (ocaml-stdlib-shims): Update to 0.3.0.
2021-11-20 17:08:47 +01:00
5a3fcf0cac
gnu: ocaml-sedlex: Update to 2.4.
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* gnu/packages/ocaml.scm (ocaml-sedlex): Update to 2.4.
[native-inputs]: Remove ocamlbuild.
[propagated-inputs]: Remove ocaml-ppx-tools-versioned.
(ocaml4.07-sedlex)[propagated-inputs]: Add ocaml-ppx-tools-versioned.
2021-11-20 17:08:37 +01:00
40f7eb975b
gnu: ocaml-qtest: Update to 2.11.2.
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* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.11.2.
2021-11-20 17:08:33 +01:00
b0e76b0828
gnu: ocaml-qcheck: Update to 0.18.
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* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.18.
* gnu/packages/patches/ocaml-qcheck-fix-test-whitespace.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-11-20 17:08:06 +01:00
0df82727a6
gnu: ocaml-ppx-variants-conv: Update to 0.14.2.
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* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): Update to 0.14.2.
[origin]: Remove patch.
* gnu/packages/patches/ocaml-ppx-variants-ppxlib-api-change.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-11-20 17:07:50 +01:00
97fd67edea
gnu: ocaml-ppx-js-style: Update to 0.14.1.
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* gnu/packages/ocaml.scm (ocaml-ppx-js-style): Update to 0.14.1.
2021-11-20 17:07:44 +01:00
95e6a977fa
gnu: ocaml-odoc: Update to 2.0.0.
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* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.0.0.
[inputs, native-inputs]: Adjust inputs.
(ocaml4.07-odoc)[inputs, native-inputs]: Keep previous inputs.
2021-11-20 17:07:24 +01:00
1277bd9fc0
gnu: ocaml-ocplib-endian: Update to 1.2.
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* gnu/packages/ocaml.scm (ocaml-ocplib-endian): Update to 1.2.
2021-11-20 17:07:14 +01:00
e46621ca6c
gnu: ocaml-mtime: Update to 1.3.0.
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* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.3.0.
2021-11-20 17:07:10 +01:00
63e5e127cb
gnu: ocaml-mdx: Remove unneeded dependency.
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* gnu/packages/ocaml.scm (ocaml-mdx)[inputs]: remove
ocaml-migrate-parsetree.
2021-11-20 17:06:59 +01:00
e7bf93e5cc
gnu: ocaml-integers: Update to 0.5.1.
2021-11-20 17:06:50 +01:00
426faa76d1
gnu: ocaml-fmt: Update to 0.9.0.
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* gnu/packages/ocaml.scm (ocaml-fmt): Update to 0.9.0.
(ocaml4.07-fmt): New variable.
2021-11-20 17:06:30 +01:00
c618f4a9cc
gnu: pigx-bsseq: Update to 0.1.6.
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* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.6.
2021-11-20 16:31:32 +01:00
b182e13638
gnu: python-scikit-learn: Update to 1.0.1.
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* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.1.
[arguments]: Disable one failing network test.
2021-11-20 16:22:53 +01:00
3d56b8af90
gnu: python-scikit-learn: Run tests conditionally.
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* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Respect
TESTS? in 'check phase.
2021-11-20 16:22:53 +01:00
7ca5dc370d
gnu: python-joblib: Update to 1.1.0.
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* gnu/packages/python-xyz.scm (python-joblib): Update to 1.1.0.
[arguments]: Disable one test.
2021-11-20 16:22:53 +01:00
f407e4b0f9
gnu: python2-joblib: Do not inherit source from python-joblib.
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* gnu/packages/python-xyz.scm (python2-joblib)[version]: Explicitly set to
0.14.1.
[source]: Do not inherit.
2021-11-20 16:22:49 +01:00
76df1ad3df
gnu: gtk: Guard against timeouts in the test suite.
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This change piggy backs on the improvements to the meson-build-system made in
dfcc96d8f48716ae5aefb383c58b153d5bcb407c; it's motivated by timeouts that
occurred in the GTK test suite while building on a heavily loaded machine.
* gnu/packages/gtk.scm (gtk)[parallel-tests]: New argument.
[test-options]: New argument, which now includes --suite=gtk and
--no-suite=gsk-compare-broadway, to match what upstream uses.
[phases]{check}: Remove override.
2021-11-20 08:57:02 -05:00
58c42ce41d
gnu: libnice: Disable the 'test-bsd' test.
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* gnu/packages/networking.scm (libnice)
[phases]{disable-failing-test}: Rename to...
{disable-failing-tests}: ... this, plural. Disable 'test-bsd'.
2021-11-20 08:57:02 -05:00
cb09adc093
gnu: wayland: Use native-inputs unconditionally
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* gnu/packages/freedesktop.scm (wayland): Remove trailing #t.
[phases]: Use native-inputs unconditionally.
2021-11-20 08:57:02 -05:00
afacad8b67
gnu: gnome-shell: Update to 41.0.
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* gnu/packages/gnome.scm (gnome-shell): Update to 41.0.
[origin]: Remove patches and modules fields.
[phases]{pre-check}: Set HOME.
* gnu/packages/patches/gnome-shell-disable-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-20 08:57:01 -05:00
b342b68c83
gnu: gsettings-desktop-schemas: Update to 41.0.
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* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 41.0.
Reformat synopsis and description.
[origin]: Fix indentation.
2021-11-20 08:57:01 -05:00
9e87a92742
gnu: gjs: Update to 1.70.0.
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* gnu/packages/gnome.scm (gjs): Update to 1.70.0.
2021-11-20 08:57:01 -05:00
d1c2fe248a
gnu: mutter: Update to 41.0 and enable tests.
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* gnu/packages/gnome.scm (mutter): Update to 41.0.
[imported-modules, modules]: New arguments.
[configure-flags]: Specify the gles2_libname, egl_device and wayland_eglstream
options. Enable the profiler by removing the option.
[phases]{patch-dlopen-calls}: New phase.
{disable-problematic-tests}: Likewise.
{check}: Override phase.
[native-inputs]{xorg-server-for-tests}: Replace with...
{xvfb-run}: ... this.
{adwaita-icon-theme, libxcursor, pipewire-0.3}
{python-dbus, python-dbusmock, tini}: New native inputs.
[propagated-inputs]: Add libxcvt.
[inputs]: Add egl-wayland and sysprof.
2021-11-20 08:57:01 -05:00
7063ee6d9d
gnu: libxcursor: Add a search path for XCURSOR_PATH.
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* gnu/packages/xorg.scm (libxcursor): Fix indentation.
[native-search-paths]: New field (previously commented). Update comment.
2021-11-20 08:57:01 -05:00
8444b44a8c
build: syscalls: Add a SET-CHILD-SUBREAPER! procedure.
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* guix/build/syscalls.scm (PR_SET_CHILD_SUBREAPER): New variable.
(set-child-subreaper!): New procedure.
2021-11-20 08:57:00 -05:00
Julien Lepiller
Ricardo Wurmus
Ludovic Courtès
John Kehayias
Guillaume Le Vaillant
Leo Famulari
Maxim Cournoyer