dc67794867
gnu: Python 2: Absorb grafted replacement.
...
* gnu/packages/python.scm (python-2.7)[source]: Add
'python-2.7-CVE-2021-3177.patch'.
[replacement]: Remove field.
(python-2.7/fixed): Remove variable.
2021-04-16 16:57:28 -04:00
0f7e1eed16
gnu: cyrus-sasl: Absorb grafted replacement.
...
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[source]: Use
cyrus-sasl-CVE-2019-19906.patch.
[replacement]: Remove field.
(cyrus-sasl/fixed): Remove variable.
2021-04-16 16:57:28 -04:00
92434734c5
gnu: libcroco: Absorb grafted replacement.
...
* gnu/packages/gnome.scm (libcroco)[source]: Use libcroco-CVE-2020-12825.patch.
[replacement]: Remove field.
(libcroco/fixed): Remove variable.
2021-04-16 16:57:28 -04:00
d178039a07
gnu: cairo: Absorb grafted replacement.
...
* gnu/packages/gtk.scm (cairo)[source]: Use cairo-CVE-2018-19876.patch
and cairo-CVE-2020-35492.patch.
[replacement]: Remove field.
(cairo/fixed): Remove variable.
2021-04-16 16:57:27 -04:00
a456b09c43
gnu: gdk-pixbuf: Absorb grafted replacement.
...
* gnu/packages/gtk.scm (gdk-pixbuf)[source]: Use
gdk-pixbuf-CVE-2020-29385.patch.
[replacement]: Remove field.
(gdk-pixbuf/fixed): Remove variable.
2021-04-16 16:57:27 -04:00
0cb4032f9a
gnu: OpenSSL: Absorb grafted replacement.
...
* gnu/packages/tls.scm (openssl): Update to 1.1.1j.
[replacement]: Remove field.
(openssl/fixed): Remove variable.
2021-04-16 16:57:27 -04:00
c3926120ba
gnu: Update blast+ to 2.11.0.
...
* gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0.
2021-04-16 20:56:43 +02:00
587510d7e7
gnu: certbot, python-acme: Update to 1.14.0.
...
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.14.0.
2021-04-16 12:52:49 -04:00
bbb4604487
gnu: emacs-ztree: Update to 1.0.6.
...
* gnu/packages/emacs-xyz.scm (emacs-ztree): Update to 1.0.6.
2021-04-16 18:52:18 +02:00
51b01b957a
gnu: emacs-posframe: Update to 1.0.1.
...
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.1.
2021-04-16 18:49:23 +02:00
9de5d77f9b
gnu: qutebrowser: Update to 2.2.0.
...
* gnu/packages/web-browsers.scm (qutebrowser): Update to 2.2.0.
2021-04-16 14:04:07 +02:00
4d7b6df58e
gnu: Add cl-bodge-blobs-support.
...
* gnu/packages/lisp-xyz.scm (sbcl-bodge-blobs-support,
cl-bodge-blobs-support, ecl-bodge-blobs-support): New variable.
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-04-16 13:47:10 +02:00
44f9432705
gnu: Add python-mappy.
...
* gnu/packages/python-xyz.scm (python-mappy): New variable.
2021-04-16 11:20:21 +02:00
6c7251f26e
gnu: dpkg: Update to 1.20.9.
...
* gnu/packages/debian.scm (dpkg): Update to 1.20.9.
2021-04-16 11:46:33 +03:00
482ff111d2
gnu: ubuntu-keyring: Update to 2021.03.26.
...
* gnu/packages/debian.scm (ubuntu-keyring): Update to 2021.03.26.
2021-04-16 11:46:30 +03:00
002b611276
gnu: debian-archive-keyring: Update to 2021.1.1.
...
* gnu/packages/debian.scm (debian-archive-keyring): Update to 2021.1.1.
2021-04-16 11:46:22 +03:00
ce2fe8bf34
gnu: freecad: Update to 0.19.1.
...
* gnu/packages/engineering.scm (freecad): Update to 0.19.1
[inputs]: Add double-conversion, gl2ps, jsoncpp, libjpeg-turbo, libtheora,
libtiff, libxmlplusplus, lz4, netcdf, proj, python-gitpython, python-pyyaml,
sqlite, and vtk-8. Remove vtk.
[arguments]: Add "-DBUILD_FLAT_MESH:BOOL=ON" to #:configure-flags.
2021-04-15 22:13:06 -04:00
950475bb96
gnu: Add vtk-8.
...
gnu/packages/image-processing (vtk-8): New variable.
2021-04-15 22:13:05 -04:00
ebd021f732
gnu: mesa: Add powerpc64le-linux support.
...
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm on powerpc64le.
[native-inputs]: Add glslang on powerpc64le.
[arguments]: Adjust configure-flags for powerpc64le to fix building on
powerpc64le and enable features. Add powerpc64le specific phase to skip
known failing test.
2021-04-15 21:12:54 +03:00
e7548afbad
gnu: haunt: Update to 0.2.5.
2021-04-15 13:17:19 -04:00
a5bbd38fd1
gnu: Add texlive-kastrup.
...
* gnu/packages/tex.scm: New variable.
2021-04-15 14:12:10 +01:00
27396a13c8
gnu: Add python-abjad.
...
* gnu/packages/music.scm (python-abjad): New variable.
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-15 14:26:45 +03:00
565ecf8457
gnu: Add python-quicktions.
...
* gnu/packages/python-xyz.scm (python-quicktions): New variable.
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-15 11:27:21 +03:00
c578d7a25a
gnu: Add python-uqbar.
...
* gnu/packages/graphviz.scm (python-uqbar): New variable.
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-15 11:22:29 +03:00
81b361fdd4
gnu: Add python-pytest-helpers-namespace.
...
* gnu/packages/python-check.scm (python-pytest-helpers-namespace): New
variable.
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-15 11:12:22 +03:00
5c2e4711a7
gnu: Add python-setuptools-declarative-requirements.
...
* gnu/packages/python-xyz.scm (python-setuptools-declarative-requirements):
New variable.
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-15 11:09:45 +03:00
64fe44fa84
gnu: Add python-roman.
...
* gnu/packages/python-xyz.scm (python-roman): New variable.
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-15 11:00:02 +03:00
abf032c131
gnu: emacs-emms: Update to 7.1.
...
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 7.1.
2021-04-15 09:15:49 +02:00
050be36cbf
gnu: btrfs-progs: Update to 5.11.1.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 5.11.1.
2021-04-14 20:03:06 -04:00
ab616d44a1
gnu: wireless-regdb: Update to 2020.11.20.
...
* gnu/packages/linux.scm (wireless-regdb): Update to 2020.11.20.
[description]: Correct the description.
2021-04-14 17:06:37 -04:00
afe0142e04
gnu: linux-libre 4.19: Update to 4.19.187.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.187.
(linux-libre-4.19-pristine-source): Update hash.
2021-04-14 17:06:37 -04:00
3ccc01b410
gnu: linux-libre 5.4: Update to 5.4.112.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.112.
(linux-libre-5.4-pristine-source): Update hash.
2021-04-14 17:06:37 -04:00
ad0caeb9db
gnu: linux-libre 5.10: Update to 5.10.30.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.30.
(linux-libre-5.10-pristine-source): Update hash.
2021-04-14 17:06:37 -04:00
7b2e4ccce2
gnu: linux-libre: Update to 5.11.14.
...
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.14.
(linux-libre-5.11-pristine-source): Update hash.
2021-04-14 17:06:37 -04:00
70c2897ea3
installer: Internationalize comment of the generated config.
...
* gnu/installer/steps.scm (configuration->file): Pass the comment in the
generated file through 'G_'.
2021-04-14 22:51:38 +02:00
dd9e77f81b
gnu: oil: Update to 0.8.9.
...
* gnu/packages/shells.scm (oil): Update to 0.8.9.
[arguments]: Make the 'check' phase return #t.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-14 13:49:08 -04:00
563e4bd884
gnu: cwltool: Update to 3.0.20210319143721.
...
* gnu/packages/bioinformatics.scm (cwltool): Update to 3.0.20210319143721.
[arguments]: In the loosen-version-restrictions phase, relax pytest version
restriction. In the modify-tests phase, delete file tests/test_content_type.py
since it contains tests that require network access.
2021-04-14 22:39:54 +05:30
12e210d907
gnu: python-schema-salad: Update to 7.1.20210316164414.
...
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
7.1.20210316164414.
[arguments]: Add skip-failing-tests phase.
2021-04-14 22:39:54 +05:30
3a2747ab74
gnu: cuirass: Update to 1.0.0-11.922cc66.
...
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-11.922cc66.
2021-04-14 18:05:16 +02:00
863bd265e4
gnu: python-stevedore: Propagate pbr.
...
* gnu/packages/openstack.scm (python-stevedore)[native-inputs]: Move
python-pbr from here...
[propagated-inputs]: ...to here.
[arguments]: Add phase to patch requirements.
2021-04-14 17:15:23 +02:00
9fd8f44bd7
gnu: Add python-ld.
...
* gnu/packages/python-xyz.scm (python-ld): New variable.
2021-04-14 17:15:23 +02:00
3f3d66377c
services: cuirass: Use "/tmp" database host.
...
This is a follow-up of c311147bd1
2021-04-14 16:09:35 +02:00
5bc5371b34
gnu: cuirass: Update to 1.0.0-10.17e8759.
...
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-10.17e8759.
2021-04-14 15:07:44 +02:00
9153e12d73
gnu: Add texlive-ly1.
...
* gnu/packages/tex.scm: New package.
2021-04-14 12:04:14 +01:00
f181ee1f42
gnu: emacs-vertico: Update to 0.4.
...
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.4.
2021-04-14 10:25:54 +02:00
2aa03a99e7
gnu: Add srecord.
...
* gnu/packages/flashing-tools.scm (srecord): New variable.
2021-04-14 10:20:29 +02:00
c5e149a9d9
gnu: minetest: Fix absolute path to 'rm' command.
...
* gnu/packages/games.scm (minetest)[patch-sources]: Substitute '/bin/rm' path.
[inputs]: Add coreutils.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-14 09:41:57 +02:00
a758a8a3c2
gnu: Guix: Update to 1.2.0-21.4dff6ec.
...
Fixes <https://bugs.gnu.org/46829 >.
* gnu/packages/package-management.scm (guix): Update to 1.2.0-21.4dff6ec.
2021-04-13 19:24:31 -04:00
4dff6ecde8
Revert "services: mysql: Add extra-environment as configuration option."
...
This reverts commit f3626119d7
2021-04-14 00:59:52 +02:00
c2e83b7105
gnu: guile-git: Update to 0.5.0.
...
* gnu/packages/guile.scm (guile-git): Update to 0.5.0.
2021-04-13 22:08:01 +02:00
82543e9649
gnu: emacs-git-link: Update to 0.8.3.
...
* gnu/packages/emacs-xyz.scm (emacs-git-link): Update to 0.8.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-13 14:28:50 -04:00
15de49e60b
gnu: le-certs: Update to new Let's Encrypt certificates.
...
* gnu/packages/certs.scm (le-certs): Update the certificate store.
[inputs]: Add isrgrootx2.pem, letsencryptauthorityr3.pem,
letsencryptauthorityr4.pem, letsencryptauthoritye1.pem, and
letsencryptauthoritye2.pem. Remove letsencryptauthorityx3.pem and
letsencryptauthorityx4.pem.
[arguments]: Adjust the builder accordingly.
2021-04-13 13:46:24 -04:00
c51ffa784e
tests: postgresql: Fix it.
...
This is a follow-up of c311147bd1
2021-04-13 19:31:28 +02:00
ea89fcb0da
services: postgresql: Use "/tmp" host directory.
...
This is a follow-up of c311147bd1
2021-04-13 19:31:20 +02:00
f3626119d7
services: mysql: Add extra-environment as configuration option.
...
* gnu/services/databases.scm (mysql-configuration): Add extra-environment
(mysql-service): Use #:log-file and #:environment-variables
* doc/guix.texi: Document it.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-13 18:47:32 +02:00
b5607d830c
gnu: Add r-randomforestsrc.
...
* gnu/packages/cran.scm (r-randomforestsrc): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-04-13 14:44:32 +02:00
516a101dd4
gnu: openconnect-sso: Update to 0.7.2.
...
* gnu/packages/vpn.scm (openconnect-sso): Update to 0.7.2.
[arguments]: Remove 'adjust-package-version-requirements phase.
2021-04-13 15:21:32 +03:00
f0741f3efe
gnu: Add r-hmm.
...
* gnu/packages/cran.scm (r-hmm): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-04-13 13:55:01 +02:00
9e7f09cbec
gnu: python-tinycss2: Enable tests.
...
* gnu/packages/python-web.scm (python-tinycss2)[source]: Fetch from git
repository to include tests.
[arguments]: Build from source with flit.
[native-inputs]: Add python-flit, python-pytest, python-pytest-cov,
python-pytest-flake8, and python-pytest-isort.
2021-04-13 13:41:19 +02:00
cf1517a1b7
gnu: python-ipywidgets: Update to 7.6.3.
...
* gnu/packages/python-xyz.scm (python-ipywidgets): Update to 7.6.3.
[propagated-inputs]: Add python-ipython, python-jupyterlab-widgets, and
python-nbformat.
[native-inputs]: Remove python-nose; add python-mock and ptyhon-pytest-cov.
2021-04-13 13:41:19 +02:00
7c4f9c17de
gnu: python-widgetsnbextension: Remove unnecessary inputs.
...
* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Remove python-argon2-cffi, python-ipykernel, and python-terminado.
[native-inputs]: Remove python-certifi and python-nose.
2021-04-13 13:41:19 +02:00
4cb6120584
gnu: Add python-jupyterlab-widgets.
...
* gnu/packages/jupyter.scm (python-jupyterlab-widgets): New variable.
2021-04-13 13:41:18 +02:00
a26dd2e282
gnu: Add python-jupyter-packaging.
...
* gnu/packages/jupyter.scm (python-jupyter-packaging): New variable.
2021-04-13 13:41:18 +02:00
c00996fdbe
gnu: Add python-deprecation.
...
* gnu/packages/python-xyz.scm (python-deprecation): New variable.
2021-04-13 13:41:18 +02:00
5c89e2ac6f
gnu: python-testpath: Update to 0.4.4.
...
* gnu/packages/check.scm (python-testpath): Update to 0.4.4.
[arguments]: Build the package as intended with flit.
[native-inputs]: Add python-flit.
2021-04-13 13:41:18 +02:00
636f4d5051
gnu: python-flit: Update to 3.2.0.
...
* gnu/packages/python-xyz.scm (python-flit): Update to 3.2.0.
[source]: Fetch from git repository to include flit_core.
[arguments]: Add phases to bootstrap the build.
[propagated-inputs]: Add python-pytoml and python-toml.
[native-inputs]: Add python-docutils, python-responses,
python-pygments-github-lexers, python-pytest, python-pytest-cov,
python-sphinx, python-sphinxcontrib-github-alt, and python-testpath.
2021-04-13 13:41:18 +02:00
a818a34f88
gnu: Add python-sphinxcontrib-github-alt.
...
* gnu/packages/sphinx.scm (python-sphinxcontrib-github-alt): New variable.
2021-04-13 13:41:18 +02:00
f5acecdd46
gnu: Add python-requests-unixsocket.
...
* gnu/packages/python-web.scm (python-requests-unixsocket): New variable.
2021-04-13 13:41:18 +02:00
2572bc8125
gnu: Add python-pygments-github-lexers.
...
* gnu/packages/python-xyz.scm (python-pygments-github-lexers): New variable.
2021-04-13 13:41:18 +02:00
3bd962bc3c
gnu: Add python-pytoml.
...
* gnu/packages/python-build.scm (python-pytoml): New variable.
2021-04-13 13:41:18 +02:00
5ce53a4d1c
gnu: Remove python2-ipykernel.
...
* gnu/packages/python-xyz.scm (python2-ipykernel): Remove variable.
(python-ipykernel)[properties]: Remove python2-variant.
2021-04-13 13:41:18 +02:00
89f1a4a415
gnu: Remove python2-jupyter-console.
...
* gnu/packages/python-xyz.scm (python2-jupyter-console): Remove variable.
(python-jupyter-console)[properties]: Remove python2-variant.
2021-04-13 13:41:18 +02:00
a0a8fdeaf2
gnu: Remove python2-jupyter-core.
...
* gnu/packages/python-xyz.scm (python2-jupyter-core): Remove variable.
2021-04-13 13:41:18 +02:00
3a62614f32
gnu: Remove python2-ipyparallel.
...
* gnu/packages/python-xyz.scm (python2-ipyparallel): Remove variable.
2021-04-13 13:41:18 +02:00
1388c166e7
gnu: Remove python2-matplotlib-documentation.
...
* gnu/packages/python-xyz.scm (python2-matplotlib-documentation): Remove variable.
2021-04-13 13:41:17 +02:00
6b3872e871
gnu: python-nbformat: Update to 5.1.3.
...
* gnu/packages/python-xyz.scm (python-nbformat): Update to 5.1.3.
[arguments]: Remove to enable tests.
[native-inputs]: Add python-pytest.
[properties]: Add python2-variant.
(python2-nbformat): Keep at version 4.4.0; override version and source field.
2021-04-13 13:41:17 +02:00
f4af353cb2
gnu: python-nbconvert: Update to 6.0.7.
...
* gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.0.7.
[arguments]: Remove configure flags, enable tests, override check phase.
[propagated-inputs]: Add python-defusedxml, python-nbclient,
python-pandocfilters, python-jupyterlab-pygments, and python-testpath.
[properties]: Add python2-variant.
(python2-nbconvert): Override version, source, arguments, and
propagated-inputs.
2021-04-13 13:41:17 +02:00
74d2d7a322
gnu: Add python-nbclient.
...
* gnu/packages/jupyter.scm (python-nbclient): New variable.
2021-04-13 13:41:17 +02:00
95456c2fc9
gnu: Add python-jupyterlab-pygments.
...
* gnu/packages/jupyter.scm (python-jupyterlab-pygments): New variable.
2021-04-13 13:41:17 +02:00
2043e7bfc8
gnu: Add python-nest-asyncio.
...
* gnu/packages/python-xyz.scm (python-nest-asyncio): New variable.
2021-04-13 13:41:17 +02:00
6d0a3dc4bc
gnu: python-notebook: Update inputs.
...
* gnu/packages/python-xyz.scm (python-notebook)[propagated-inputs]: Add
python-argon2-cffi, python-ipykernel, python-ipython-genutils, python-jinja2,
python-jupyter-client, python-pyzmq, python-tornado-6, and python-traitlets.
[native-inputs]: Remove python-nose and python-sphinx; add python-coverage,
python-nbval, python-pytest, python-pytest-cov, and
python-requests-unixsocket.
[arguments]: Use pytest instead of nosetests.
2021-04-13 13:41:17 +02:00
e9008a66ea
gnu: python-notebook: Update to 6.3.0.
...
* gnu/packages/python-xyz.scm (python-notebook): Update to 6.3.0.
2021-04-13 13:41:17 +02:00
a7a92c00f4
gnu: python-widgetsnbextension: Add missing inputs.
...
* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Add python-argon2-cffi and python-terminado.
2021-04-13 13:41:17 +02:00
02746ead49
gnu: python-ipykernel: Update to 5.5.3.
...
* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.5.3.
2021-04-13 13:41:17 +02:00
b1415bf089
gnu: python-jupyter-client: Update to 6.1.12.
...
* gnu/packages/python-xyz.scm (python-jupyter-client): Update to 6.1.12.
[propagated-inputs]: Add python-dateutil and python-tornado-6.
[native-inputs]: Add python-pytest.
2021-04-13 13:41:17 +02:00
2a12cbaaab
gnu: python-jupyter-core: Update to 4.7.1.
...
* gnu/packages/python-xyz.scm (python-jupyter-core): Update to 4.7.1.
2021-04-13 13:41:16 +02:00
95f25c9b13
gnu: python-terminado: Update to 0.9.4.
...
* gnu/packages/python-web.scm (python-terminado): Update to 0.9.4.
[propagated-inputs]: Replace python-tornado with python-tornado-6.
[native-inputs]: Replace python-nose with python-pytest.
[home-page]: Follow redirect.
[arguments]: Update check phase.
2021-04-13 13:41:16 +02:00
85788dd64d
gnu: esbuild: Update to 0.11.9.
...
* gnu/packages/web.scm (esbuild): Update to 0.11.9.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-13 14:23:47 +03:00
504a525d37
gnu: visidata: Update to 2.4.
...
* gnu/packages/visidata.scm (visidata): Update to 2.4.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-13 14:23:40 +03:00
bad0654d4f
gnu: gnu-standards: Update to 2020-11-25.
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* gnu/packages/gnu-doc.scm (gnu-standards): Update to 2020-11-25.
[source]: Make file-name more descriptive. Use version variable for
revision.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-13 14:19:36 +03:00
995f685e4d
gnu: Add texlive-xcharter.
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* gnu/packages/tex.scm: New variable.
2021-04-13 11:33:49 +01:00
822eacc6bb
tests: halt: Fix it.
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This fixes: <https://issues.guix.gnu.org/47727 >. The OCR prompt detection is
failing, so remove it altogether. It looks like the test doesn't need the
prompt detection delay to work properly.
* gnu/tests/base.scm (run-halt-test): Remove failing OCR detection.
2021-04-13 10:02:46 +02:00
c311147bd1
services: postgresql: Change service default socket directory.
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Fixes <https://bugs.gnu.org/46737 >.
PostgreSQL running with a different socket directory to the default one in the
package itself breaks some services, this commit restores the previous
behaviour where PostgreSQL by default will run with a socket directory that
matches the default used by PostgreSQL packaged for Guix.
Switching to a different default value can happen, but only alongside changing
the PostgreSQL package.
* gnu/services/databases.scm (<postgresql-config-file>)[socket-directory]:
Change default to #false.
* doc/guix.texi (Database Services): Update documentation, and specify a
different value for disabling connections via sockets.
* gnu/tests/guix.scm (%guix-data-service-os): Use default PostgreSQL
behaviour.
* gnu/tests/monitoring.scm (%zabbix-os): Likewise.
* gnu/tests/web.scm (patchwork-os): Likewise.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-12 19:12:46 -04:00
1bbed20332
gnu: guile-picture-language: Update to 0.0.1-5.a1322bf.
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* gnu/packages/guile-xyz.scm (guile-picture-language): Update to
0.0.1-5.a1322bf.
2021-04-12 21:51:38 +02:00
4d0d6d8626
services: ipfs: Tweak description.
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* gnu/services/networking.scm (ipfs-service-type)[description]: Avoid
abbreviation.
2021-04-12 18:44:09 +02:00
68c9e0a56e
gnu: tests: Test basic funtionality of the IPFS service.
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It is tested whether the IPFS service listens
at the gateway and API ports and whether it
is possible to upload and download a bytevector.
* gnu/tests/networking.scm
(%ipfs-os): New variable.
(run-ipfs-test): New procedure.
(%test-ipfs): New system test.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-12 18:42:23 +02:00
3332f4365b
tests: Support package extensions in the backdoor REPL.
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* gnu/tests.scm
(<marionette-configuration>): Add 'extensions' field.
(marionette-shepherd-service): Honour the field.
(with-import-modules-and-extensions): Define a combination
of 'with-import-modules' and 'with-extensions'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-12 18:42:22 +02:00
2978832b92
services: Add ipfs-service-type
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* gnu/services/networking.scm (ipfs-service-type)
(%ipfs-home-mapping, %ipfs-environment)
(%ipfs-accounts, %ipfs-home): New variables.
(ipfs-configuration, ipfs-configuration?)
(ipfs-configuration-package, ipfs-configuration-gateway)
(ipfs-configuration-api, ipfs-shepherd-service)
(ipfs-binary, %ipfs-activation): New procedures.
* doc/guix.texi (Networking Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-12 18:42:22 +02:00
834aa48504
gnu: racket: Don't inject store paths into Racket files.
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Apparently, during grafting, Guix can somehow mangle compiled
Racket CS files (.zo) such that Racket will refuse to load them.
(Maybe it has something to do with compression?)
So, we stop patching Racket sources with absolute paths to store
files (i.e. for foreign libraries to dlopen).
Instead, we put them in a data file that doesn't get compiled or,
in one case, embed it in C.
Fixes https://issues.guix.gnu.org/47064
* gnu/packages/patches/racket-sh-via-rktio.patch: New file.
Adds a special case at the C level, controlled by a preprocessor macro,
to handle attempts to execute "/bin/sh".
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (racket)[source](patches): Apply it.
(racket)[arguments](#:configure-flags): Add the CPP flag to enable it.
(racket)[arguments](#:modules): Use srfi-1.
(racket)[arguments](#:phases): Remove 'patch-/bin/sh and 'pre-configure.
Change 'pre-configure-minimal to just change directory.
Add 'patch-config.rktd-lib-search-dirs after 'build and before 'install
to configure Racket's "lib-search-dirs".
(racket, racket-minimal)[inputs]: Add bash-minimal as an explicit input.
(racket-minimal)[source]: Adjust to inherit patches from racket.
(racket-minimal)[arguments]: Inherit from racket: changes no longer needed.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-12 18:42:22 +02:00
eb8da54170
gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene.
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* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene):
New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-04-12 18:25:40 +02:00
Leo Famulari
Roel Janssen
Nicolas Goaziou
Léo Le Bouter
Adam Kandur
Efraim Flashner
Ekaitz Zarraga
David Thompson
Paul Garlick
BonfaceKilz
Ludovic Courtès
Felix Gruber
Arun Isaac
Mathieu Othacehe
Ricardo Wurmus
Trevor Hass
Leo Prikler
Xinglu Chen
methuselah-0
Peter Lo
Ryan Prior
Morgan Smith
Christopher Baines
Maxime Devos
Philip McGrath
hli