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65710 Commits (696d9f28d3d0b56d83e7f6e43fd363f94cf02a73)

Author SHA1 Message Date
Ricardo Wurmus 5103da059a
gnu: r-msnbase: Update to 2.16.1.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.1.
2021-02-11 21:33:38 +01:00
Ricardo Wurmus 2596200514
gnu: r-methylkit: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.1.
2021-02-11 21:33:38 +01:00
Ricardo Wurmus 3f7e96acc7
gnu: r-delayedarray: Update to 0.16.1.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.1.
2021-02-11 21:33:38 +01:00
Ricardo Wurmus 9b66b8017d
gnu: r-biomart: Update to 2.46.3.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.3.
2021-02-11 21:33:38 +01:00
Ricardo Wurmus 8e25b1acf9
gnu: r-edger: Update to 3.32.1.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.1.
2021-02-11 21:33:38 +01:00
Ricardo Wurmus 809f725977
gnu: r-iranges: Update to 2.24.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus 88fd569ddf
gnu: r-s4vectors: Update to 0.28.1.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus babb2dce34
gnu: r-systempiper: Update to 1.24.3.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.3.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus d3ac91dd9d
gnu: r-gseabase: Update to 1.52.1.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus 074d142ab6
gnu: r-genefilter: Update to 1.72.1.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus 311bb4bc3d
gnu: r-delayedmatrixstats: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.3.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus 8acfd9f3d4
gnu: r-sparsematrixstats: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.2.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus de4fc49270
gnu: r-scran: Update to 1.18.5.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.5.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus cf3e703820
gnu: r-scuttle: Update to 1.0.4.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.4.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus 79d51ffeca
gnu: r-beachmat: Update to 2.6.4.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus a1357422c3
gnu: r-rhdf5lib: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus f7947f8991
gnu: r-hdf5array: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus 18ebacaa1c
gnu: r-preprocesscore: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus da109ae738
gnu: r-chemminer: Update to 3.42.1.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1.
2021-02-11 21:33:37 +01:00
Ricardo Wurmus 6f37c3ea40
gnu: r-gdsfmt: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1.
2021-02-11 21:33:36 +01:00
Ricardo Wurmus 9470f901d9
gnu: r-cytolib: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1.
2021-02-11 21:33:36 +01:00
Ricardo Wurmus 691178d67b
gnu: r-multidataset: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1.
2021-02-11 21:33:36 +01:00
Ricardo Wurmus 6d0709231f
gnu: r-clusterprofiler: Update to 3.18.1.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1.
2021-02-11 21:33:36 +01:00
Ricardo Wurmus ebf9ad7984
gnu: r-enrichplot: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2.
2021-02-11 21:33:36 +01:00
Ricardo Wurmus 669ea5ab09
gnu: r-matrixgenerics: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1.
2021-02-11 21:33:36 +01:00
Ricardo Wurmus 61609fb88e
gnu: r-diffbind: Update to 3.0.13.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13.
2021-02-11 21:33:36 +01:00
Leo Famulari a18492118c
gnu: OpenLDAP: Update to 2.4.57 [security fixes].
Fixes CVE-2020-{36221,36222,36223,36224,36225,36226,36226,36228,36229,36230}.

* gnu/packages/openldap.scm (openldap-2.4.57): New variable.
(openldap)[replacement]: New field.
2021-02-11 15:02:53 -05:00
Nicolas Goaziou 7f891056d4
gnu: Add wob.
* gnu/packages/xdisorg.scm (wob): New variable.
2021-02-11 20:54:04 +01:00
Nicolas Goaziou cf95ef7f44
gnu: Add gammastep.
* gnu/packages/xdisorg.scm (gammastep): New variable.
2021-02-11 20:50:39 +01:00
Julien Lepiller c5dc87fee8
gnu: Add font-cozette.
* gnu/packages/fonts.scm (font-cozette): New variable.
2021-02-11 17:51:50 +01:00
Julien Lepiller 7cabeb80d4
gnu: Add python-crayons.
* gnu/packages/python-xyz.scm (python-crayons): New variable.
2021-02-11 17:50:16 +01:00
Nicolas Goaziou 3ff9779e83
gnu: grammalecte: Update to 2.1.0.
* gnu/packages/dictionaries.scm (grammalecte): Update to 2.1.0.
2021-02-11 16:14:39 +01:00
Efraim Flashner ab5fa99ab4
gnu: python-dropbox: Update to 11.2.0.
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.2.0.
2021-02-11 16:29:47 +02:00
Efraim Flashner e81457aaa6
gnu: dbxfs: Update to 1.0.51.
* gnu/packages/file-systems.scm (dbxfs): Update to 1.0.51.
2021-02-11 16:28:37 +02:00
Nicolas Goaziou c207a8ac49
gnu: texmacs: Update to 1.99.18.
* gnu/packages/text-editors.scm (texmacs): Update to 1.99.18.
2021-02-11 15:15:23 +01:00
Nicolas Goaziou 8738c65b85
gnu: lyx: Update to 2.3.6.1.
* gnu/packages/tex.scm (lyx): Update to 2.3.6.1.
2021-02-11 15:11:57 +01:00
Nicolas Goaziou 8542d6292b
gnu: python-duniterpy: Update to 0.61.0.
* gnu/packages/finance.scm (python-duniterpy): Update to 0.61.0.
2021-02-11 14:50:04 +01:00
Nicolas Goaziou 08dae88f55
gnu: musescore: Update to 3.6.2.
* gnu/packages/music.scm (musescore): Update to 3.6.2.
2021-02-11 14:32:46 +01:00
Nicolas Goaziou cf92f22be8
gnu: emacs-ebdb: Update to 0.6.22.
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.6.22.
2021-02-11 14:27:07 +01:00
Ryan Prior 91989591bc
gnu: visidata: Update to 2.2.1.
* gnu/packages/visidata.scm (visidata): Update to 2.2.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 19:55:38 +08:00
Ryan Prior ecbcbd5359
gnu: esbuild: Update to 0.8.43.
* gnu/packages/web.scm (esbuild): Update to 0.8.43.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-02-11 13:17:08 +02:00
Pierre Neidhardt 1b62e3ab42
gnu: emacs-ztree: Update to 20210210.
* gnu/packages/emacs-xyz.scm (emacs-ztree): Update to 20210210.
2021-02-11 12:01:53 +01:00
Stefan Reichör 91689b9e08
gnu: Add tiramisu.
* gnu/packages/gnome-xyz.scm (tiramisu): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 18:15:26 +08:00
Efraim Flashner f72ff06ef8
gnu: dropbear: Unbundle libraries.
* gnu/packages/ssh.scm (dropbear)[source]: Add snippet to remove
libtommath, libtomcrypt.
[arguments]: Add configure-flag to not use bundled libraries.
[inputs]: Add libtomcrypt, libtommath.
2021-02-11 12:04:37 +02:00
Efraim Flashner c9c68344ba
gnu: libtomcrypt: Patch pkg-config file to pull libtommath.
* gnu/packages/multiprecision.scm (libtomcrypt)[arguments]: Adjust
'prepare-build phase to patch libtomcrypt.pc to link tommath.
2021-02-11 12:04:37 +02:00
Efraim Flashner 4b62be5ca4
gnu: Add libtomcrypt.
* gnu/packages/multiprecision.scm (libtomcrypt): New variable.
2021-02-11 11:33:15 +02:00
Léo Le Bouter 78bbf6c443
gnu: lz4: Disable parallel testing.
* gnu/packages/compression.scm (lz4)[arguments]: Set "#:parallel-tests?"
keyword argument to "#f".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 17:25:08 +08:00
Léo Le Bouter 4767ab4bf6
gnu: miredo: Fix creation of .pid file.
* gnu/packages/networking.scm (miredo)[arguments]: Add "--localstatedir=/var"
to #:configure-flags and add 'do-not-create-/run phase to #:phases to remove
code that tries to create a directory inside "@localstatedir@" during install.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 17:18:15 +08:00
John Doe 988ac06ce8
gnu: vim: Fix test_signals test.
* gnu/packages/vim.scm (vim)[arguments]: Add "CFLAGS=-D_REENTRANT" to

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 17:12:17 +08:00
宋文武 e429325d37
services: Add 'xorg-server-service-type'.
* gnu/services/xorg.scm (xorg-server-service-type): New service type.
(xorg-server-profile-service): New procedure.
2021-02-11 17:01:43 +08:00
Léo Le Bouter af06582d6c
gnu: parted: Update to 3.4.
* gnu/packages/disk.scm (parted): Update to 3.4.
[native-inputs]: Remove python-2 and add python-wrapper to fix tests.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 16:55:12 +08:00
Raghav Gururajan 1755498ca7
gnu: gajim-openpgp: Update to 1.3.9.
* gnu/packages/messaging.scm (gajim-openpgp): Update to 1.3.9.
[propagated-inputs]: Add python-gpg.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 16:23:47 +08:00
Raghav Gururajan fb2107cd4a
gnu: gajim-omemo: Update to 2.7.13.
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.7.13.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 16:23:17 +08:00
Raghav Gururajan e5d726fefa
gnu: gajim: Fix credentials management.
* gnu/packages/messaging.scm (gajim)[inputs]: Remove gnome-keyring.
Add libsecret.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 16:22:53 +08:00
Raghav Gururajan be450b19ce
gnu: gajim: Update to 1.3.0.
* gnu/packages/messaging.scm (gajim): Update to 1.3.0.
[arguments]<#:phases>['disable-failing-tests]: New phase.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 16:21:14 +08:00
Raghav Gururajan 0da9dd4ca9
gnu: python-nbxmpp: Support GSSAPI authentication.
* gnu/packages/messaging.scm (python-nbxmpp)[inputs]: Add python-gssapi.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 16:18:18 +08:00
Raghav Gururajan fdf4a6a8a7
gnu: python-nbxmpp: Update to 2.0.1.
* gnu/packages/messaging.scm (python-nbxmpp): Update to 2.0.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 16:17:44 +08:00
宋文武 c7296465cf
gnu: hedgewars: Fix build.
Fixes <https://issues.guix.gnu.org/46398>.

* gnu/packages/games.scm (hedgewars)[arguments]<#:phases>: Add the missing
"#include <QPainterPath>".
2021-02-11 11:56:09 +08:00
Yuriy Glukhov 6fbefd03f0
gnu: nim: Update to 1.4.2.
* gnu/packages/nim.scm (nim): Update to 1.4.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 11:30:49 +08:00
Léo Le Bouter b01d82a7f6
gnu: procps: Update provided programs list in description.
* gnu/packages/linux.scm (procps)[description]: Update provided programs list.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 11:21:09 +08:00
Alexey Abramov 408f0b4c4d
services: knot: Fix configuration verification.
* gnu/services/dns.scm (verify-knot-key-configuration): Fix the
order of memq arguments.
(verify-knot-keystore-configuration): Likewise.
(verify-knot-acl-configuration): Replace fold with every procedure.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 11:11:39 +08:00
Tanguy Le Carrour 07143d9fe1
gnu: python-pkginfo: Enable tests.
* gnu/packages/python-xyz.scm (python-pkginfo)[arguments]: Don't disable tests.
Disable a failing test.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 11:05:40 +08:00
Tanguy Le Carrour bdb3263c14
gnu: python-pkginfo: Update to 1.7.0.
* gnu/packages/python-xyz.scm (python-pkginfo): Udpate to 1.7.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 11:04:38 +08:00
Raghav Gururajan 2a81751f61
gnu: srain: Update to 1.1.3.
* gnu/packages/irc.scm (srain): Update to 1.1.3.
[native-inputs]: Add python-wrapper.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11 10:52:07 +08:00
Leo Famulari 27a5360a55
gnu: subversion: Update to 1.14.1 [fixes CVE-2020-17525].
* gnu/packages/version-control.scm (subversion): Update to 1.14.1.
2021-02-10 21:03:32 -05:00
Ricardo Wurmus 682ff3466e
gnu: r-forcats: Update to 0.5.1.
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.1.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:28 +01:00
Ricardo Wurmus f97164ee9f
gnu: r-quantreg: Update to 5.83.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.83.
2021-02-11 01:03:28 +01:00
Ricardo Wurmus 2684727a92
gnu: r-ggthemes: Update to 4.2.4.
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.2.4.
2021-02-11 01:03:28 +01:00
Ricardo Wurmus b27d2251b8
gnu: r-matrixstats: Update to 0.58.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.58.0.
2021-02-11 01:03:28 +01:00
Ricardo Wurmus eda41f1372
gnu: r-segmented: Update to 1.3-2.
* gnu/packages/statistics.scm (r-segmented): Update to 1.3-2.
2021-02-11 01:03:28 +01:00
Ricardo Wurmus 5fb34b55ff
gnu: r-rsqlite: Update to 2.2.3.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.3.
2021-02-11 01:03:28 +01:00
Ricardo Wurmus 6122d3851d
gnu: r-rcpparmadillo: Update to 0.10.2.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.1.0.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus af40f3986e
gnu: r-plotrix: Update to 3.8-1.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.8-1.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 97e03cc957
gnu: r-withr: Update to 2.4.1.
* gnu/packages/statistics.scm (r-withr): Update to 2.4.1.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 6bef79759d
gnu: r-dbplyr: Update to 2.1.0.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.1.0.
[propagated-inputs]: Add r-ellipsis and r-vctrs.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus d3aed469c7
gnu: r-dplyr: Update to 1.0.4.
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.4.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 3977bb8ba9
gnu: r-tibble: Update to 3.0.6.
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.6.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 5a16a85718
gnu: r-crayon: Update to 1.4.1.
* gnu/packages/statistics.scm (r-crayon): Update to 1.4.1.
[propagated-inputs]: Remove r-memoise.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 2bc967e53d
gnu: r-memoise: Update to 2.0.0.
* gnu/packages/statistics.scm (r-memoise): Update to 2.0.0.
[propagated-inputs]: Remove r-digest; add r-cachem and r-rlang.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus d7f87af791
gnu: r-knitr: Update to 1.31.
* gnu/packages/statistics.scm (r-knitr): Update to 1.31.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 0f43891321
gnu: r-spatial: Update to 7.3-13.
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-13.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 3bab010246
gnu: r-nnet: Update to 7.3-15.
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-15.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 9236cd7c9e
gnu: r-nlme: Update to 3.1-152.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-152.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 951c0288e5
gnu: r-class: Update to 7.3-18.
* gnu/packages/statistics.scm (r-class): Update to 7.3-18.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus 184bb5a137
gnu: r-boot: Update to 1.3-26.
* gnu/packages/statistics.scm (r-boot): Update to 1.3-26.
2021-02-11 01:03:27 +01:00
Ricardo Wurmus d2d6bbfe8f
gnu: r-mlr3tuning: Update to 0.6.0.
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.6.0.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus 45610d1f58
gnu: r-bbotk: Update to 0.3.0.
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.0.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus cc7002ee45
gnu: r-mlr3: Update to 0.10.0.
* gnu/packages/cran.scm (r-mlr3): Update to 0.10.0.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus e71023f92a
gnu: r-paradox: Update to 0.7.0.
* gnu/packages/cran.scm (r-paradox): Update to 0.7.0.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus da00231066
gnu: r-seurat: Update to 4.0.0.
* gnu/packages/cran.scm (r-seurat): Update to 4.0.0.
[propagated-inputs]: Remove r-rsvd; add r-seuratobject.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus b546f1328c
gnu: r-cpp11: Update to 0.2.6.
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.6.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus cf9a63a01d
gnu: r-spatstat-data: Update to 2.0-0.
* gnu/packages/cran.scm (r-spatstat-data): Update to 2.0-0.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus 689ba24ccb
gnu: r-spatstat-utils: Update to 2.0-0.
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.0-0.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus 58b85de9ee
gnu: r-qgraph: Update to 1.6.9.
* gnu/packages/cran.scm (r-qgraph): Update to 1.6.9.
[propagated-inputs]: Remove r-bdgraph, r-d3network, r-ggraph, r-huge, and r-tidygraph.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus 22da0a1e28
gnu: r-topicmodels: Update to 0.2-12.
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-12.
[inputs]: Add gsl.
[native-inputs]: Remove gsl.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus 8cf3851512
gnu: r-stopwords: Update to 2.2.
* gnu/packages/cran.scm (r-stopwords): Update to 2.2.
[propagated-inputs]: Remove r-desc and r-usethis.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus bc9ca4fd4b
gnu: r-archivist: Update to 2.3.5.
* gnu/packages/cran.scm (r-archivist): Update to 2.3.5.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus f6aed9aba6
gnu: r-actuar: Update to 3.1-1.
* gnu/packages/cran.scm (r-actuar): Update to 3.1-1.
2021-02-11 01:03:26 +01:00
Ricardo Wurmus 46d995613f
gnu: r-pracma: Update to 2.3.3.
* gnu/packages/cran.scm (r-pracma): Update to 2.3.3.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 98e2e08536
gnu: r-assertable: Update to 0.2.8.
* gnu/packages/cran.scm (r-assertable): Update to 0.2.8.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 9c055dd609
gnu: r-insol: Update to 1.2.2.
* gnu/packages/cran.scm (r-insol): Update to 1.2.2.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 11eb942f65
gnu: r-rgdal: Update to 1.5-23.
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-23.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 20e047f3e7
gnu: r-assertr: Update to 2.8.
* gnu/packages/cran.scm (r-assertr): Update to 2.8.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 716203d0e9
gnu: r-leiden: Update to 0.3.7.
* gnu/packages/cran.scm (r-leiden): Update to 0.3.7.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 49e2b7e568
gnu: r-enrichr: Update to 3.0.
* gnu/packages/cran.scm (r-enrichr): Update to 3.0.
[propagated-inputs]: Add r-ggplot2.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 98dd2d390a
gnu: r-ingredients: Update to 2.0.1.
* gnu/packages/cran.scm (r-ingredients): Update to 2.0.1.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 669446f24d
gnu: r-mlbench: Update to 2.1-3.
* gnu/packages/cran.scm (r-mlbench): Update to 2.1-3.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 23ddb365d9
gnu: r-arsenal: Update to 3.6.1.
* gnu/packages/cran.scm (r-arsenal): Update to 3.6.1.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus 5d30c1bc2b
gnu: r-rms: Update to 6.1-1.
* gnu/packages/cran.scm (r-rms): Update to 6.1-1.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus d64ceeb485
gnu: r-irdisplay: Update to 1.0.
* gnu/packages/cran.scm (r-irdisplay): Update to 1.0.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus e04bf0db53
gnu: r-repr: Update to 1.1.3.
* gnu/packages/cran.scm (r-repr): Update to 1.1.3.
2021-02-11 01:03:25 +01:00
Ricardo Wurmus adbd71c876
gnu: r-pbdzmq: Update to 0.3-5.
* gnu/packages/cran.scm (r-pbdzmq): Update to 0.3-5.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus ef45b2c64d
gnu: r-epi: Update to 2.43.
* gnu/packages/cran.scm (r-epi): Update to 2.43.
[propagated-inputs]: Add r-purrr.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus 11934f0743
gnu: r-assertive-base: Update to 0.0-9.
* gnu/packages/cran.scm (r-assertive-base): Update to 0.0-9.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus e3a7a76d77
gnu: r-ontologyindex: Update to 2.7.
* gnu/packages/cran.scm (r-ontologyindex): Update to 2.7.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus bd6dc5c100
gnu: r-pixmap: Update to 0.4-12.
* gnu/packages/cran.scm (r-pixmap): Update to 0.4-12.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus 7595870479
gnu: r-feature: Update to 1.2.15.
* gnu/packages/cran.scm (r-feature): Update to 1.2.15.
[propagated-inputs]: Add r-plot3d.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus e9c97414f5
gnu: r-ks: Update to 1.12.0.
* gnu/packages/cran.scm (r-ks): Update to 1.12.0.
[propagated-inputs]: Add r-plot3d.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus 712e49c760
gnu: r-tweedie: Update to 2.3.3.
* gnu/packages/cran.scm (r-tweedie): Update to 2.3.3.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus cfa6931096
gnu: r-usethis: Update to 2.0.1.
* gnu/packages/cran.scm (r-usethis): Update to 2.0.1.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus ac9293a49b
gnu: r-gert: Update to 1.1.0.
* gnu/packages/cran.scm (r-gert): Update to 1.1.0.
[propagated-inputs]: Add r-sys.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus 4585cbcbeb
gnu: r-performance: Update to 0.7.0.
* gnu/packages/cran.scm (r-performance): Update to 0.7.0.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus 56b4c4e65e
gnu: r-bayestestr: Update to 0.8.2.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.8.2.
2021-02-11 01:03:24 +01:00
Ricardo Wurmus b2ed0101f3
gnu: r-tmb: Update to 1.7.19.
* gnu/packages/cran.scm (r-tmb): Update to 1.7.19.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus 13c5e174d4
gnu: r-coin: Update to 1.4-1.
* gnu/packages/cran.scm (r-coin): Update to 1.4-1.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus 1b0e97fc6d
gnu: r-libcoin: Update to 1.0-8.
* gnu/packages/cran.scm (r-libcoin): Update to 1.0-8.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus c4466c81c1
gnu: r-emmeans: Update to 1.5.4.
* gnu/packages/cran.scm (r-emmeans): Update to 1.5.4.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus b40e867ca1
gnu: r-multcomp: Update to 1.4-16.
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-16.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus db81b24b32
gnu: r-physicalactivity: Update to 0.2-4.
* gnu/packages/cran.scm (r-physicalactivity): Update to 0.2-4.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus 158ddc750f
gnu: r-furrr: Update to 0.2.2.
* gnu/packages/cran.scm (r-furrr): Update to 0.2.2.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus 53431e3b70
gnu: r-findpython: Update to 1.0.7.
* gnu/packages/cran.scm (r-findpython): Update to 1.0.7.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus 84ff276572
gnu: r-flextable: Update to 0.6.3.
* gnu/packages/cran.scm (r-flextable): Update to 0.6.3.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus d489ff5b71
gnu: r-rappdirs: Update to 0.3.3.
* gnu/packages/cran.scm (r-rappdirs): Update to 0.3.3.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus f1d3357e06
gnu: r-riverplot: Update to 0.10.
* gnu/packages/cran.scm (r-riverplot): Update to 0.10.
[propagated-inputs]: Add r-rcolorbrewer.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus ce6c3c1916
gnu: r-heatmaply: Update to 1.2.1.
* gnu/packages/cran.scm (r-heatmaply): Update to 1.2.1.
2021-02-11 01:03:23 +01:00
Ricardo Wurmus 9f00ff58a3
gnu: r-splus2r: Update to 1.3-3.
* gnu/packages/cran.scm (r-splus2r): Update to 1.3-3.
[native-inputs]: Remove gfortran.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus 254227b448
gnu: r-tinytex: Update to 0.29.
* gnu/packages/cran.scm (r-tinytex): Update to 0.29.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus a46f2ab5ac
gnu: r-xfun: Update to 0.21.
* gnu/packages/cran.scm (r-xfun): Update to 0.21.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus 87ac76d4ba
gnu: r-cli: Update to 2.3.0.
* gnu/packages/cran.scm (r-cli): Update to 2.3.0.
[propagated-inputs]: Remove r-crayon and r-fansi.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus 225d92e50d
gnu: r-mice: Update to 3.13.0.
* gnu/packages/cran.scm (r-mice): Update to 3.13.0.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus f8706749e9
gnu: r-mitml: Update to 0.4-1.
* gnu/packages/cran.scm (r-mitml): Update to 0.4-1.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus 722d12e5f4
gnu: r-broom: Update to 0.7.4.
* gnu/packages/cran.scm (r-broom): Update to 0.7.4.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus cec40e0a90
gnu: r-inum: Update to 1.0-3.
* gnu/packages/cran.scm (r-inum): Update to 1.0-3.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus 8235a26521
gnu: r-partykit: Update to 1.2-12.
* gnu/packages/cran.scm (r-partykit): Update to 1.2-12.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus bbecb13e01
gnu: r-shinythemes: Update to 1.2.0.
* gnu/packages/cran.scm (r-shinythemes): Update to 1.2.0.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus 86be5ada6f
gnu: r-fastmap: Update to 1.1.0.
* gnu/packages/cran.scm (r-fastmap): Update to 1.1.0.
2021-02-11 01:03:22 +01:00
Ricardo Wurmus c16205b6ce
gnu: r-htmltools: Update to 0.5.1.1.
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.1.1.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus f63a49c4a7
gnu: r-reprex: Update to 1.0.0.
* gnu/packages/cran.scm (r-reprex): Update to 1.0.0.
[propagated-inputs]: Remove r-whisker; add r-cli, r-glue, and r-knitr.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus 56f73cb5b0
gnu: r-ggpmisc: Update to 0.3.8-1.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.8-1.
[propagated-inputs]: Remove r-broom; add r-generics.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus d7c36b6057
gnu: r-brio: Update to 1.1.1.
* gnu/packages/cran.scm (r-brio): Update to 1.1.1.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus 212b7d0305
gnu: r-stabs: Update to 0.6-4.
* gnu/packages/cran.scm (r-stabs): Update to 0.6-4.
[native-inputs]: Add r-knitr.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus 213ee65742
gnu: Add r-seuratobject.
* gnu/packages/cran.scm (r-seuratobject): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus f3d511cc91
gnu: Add r-udunits2.
* gnu/packages/cran.scm (r-udunits2): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus bfb7791cb0
gnu: Add r-cachem.
* gnu/packages/cran.scm (r-cachem): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus fa6cc510ea
gnu: Add r-pkgdown.
* gnu/packages/cran.scm (r-pkgdown): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus 490c6d4b03
gnu: Add r-downlit.
* gnu/packages/cran.scm (r-downlit): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus 3d3003bade
gnu: Add r-ragg.
* gnu/packages/cran.scm (r-ragg): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus 4f72a349f1
gnu: Add r-textshaping.
* gnu/packages/cran.scm (r-textshaping): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus b2dcc4e923
gnu: Add r-clustree.
* gnu/packages/cran.scm (r-clustree): New variable.
2021-02-11 01:03:21 +01:00
Ricardo Wurmus c35364ea03
gnu: Add r-highlight.
* gnu/packages/cran.scm (r-highlight): New variable.
2021-02-11 01:03:20 +01:00
Ricardo Wurmus eb21f330b9
gnu: r-systemfonts: Update to 1.0.1.
* gnu/packages/cran.scm (r-systemfonts): Update to 1.0.1.
2021-02-11 01:03:20 +01:00
Leo Famulari 8f8a1485b8
Revert "gnu: xorriso: Update to 1.5.4.pl02."
This reverts commit 589b6be996.

This update broke the creation of ISO images. See <https://bugs.gnu.org/46394>
for more info.
2021-02-10 14:21:37 -05:00
Kei Kebreau 6d36cacead
gnu: dolphin-emu: Update to 5.0-13178.
* gnu/packages/emulators.scm (dolphin-emu): Update to 5.0-13178.
[arguments]: Simplify 'generate-fonts&hardcore-libvulkan-path phase.
2021-02-10 13:36:26 -05:00
Pierre Neidhardt af55e2aad6
gnu: sbcl-cmd: Update to 20210206.
* gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 20210206.
[inputs]: Add procps.
[arguments]: Patch the paths of all external executables.
2021-02-10 12:53:26 +01:00
Sharlatan Hellseher 091ce05e4f
gnu: Add cl-varjo.
* gnu/packages/lisp-xyz.scm (cl-varjo, ecl-varjo, sbcl-varjo): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-10 11:24:46 +01:00
Sharlatan Hellseher a1dd7c3ba3
gnu: Add cl-glsl-spec.
* gnu/packages/lisp-xyz.scm (cl-glsl-spec, ecl-glsl-spec, sbcl-glsl-spec): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-10 11:24:46 +01:00
Sharlatan Hellseher 4b1e0f3090
gnu: Add cl-vas-string-metrics.
* gnu/packages/lisp-xyz.scm (cl-vas-string-metrics, ecl-vas-string-metrics,
  sbcl-vas-string-metrics): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-10 11:24:46 +01:00
Sharlatan Hellseher 84aef8392b
gnu: Add cl-fn.
* gnu/packages/lisp-xyz.scm (cl-fn, ecl-fn, sbcl-fn): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-10 11:24:46 +01:00
Sharlatan Hellseher 905b6235d3
gnu: sbcl-named-readtables: Update to 0.9-3.585a28e.
* gnu/packages/lisp-xyz.scm (sbcl-named-readtables): Update to 0.9-3.585a28e.
  [arguments]: Enable tests.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-10 11:24:45 +01:00
Sharlatan Hellseher 301f63239a
gnu: sbcl-static-vectors: Update to 1.8.6.
* gnu/packages/lisp-xyz.scm (sbcl-static-vectors): Update to 1.8.6.
  [inputs]: Add alexandria.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-10 11:24:45 +01:00
Michael Rohleder c97edf5d73
gnu: thunar: Update to 4.16.3.
* gnu/packages/xfce.scm (thunar): Update to 4.16.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-02-10 11:08:42 +02:00
Michael Rohleder 6724b3033c
gnu: xfce4-taskmanager: Update to 1.4.2.
* gnu/packages/xfce.scm (xfce4-taskmanager): Update to 1.4.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-02-10 11:08:41 +02:00
Christopher Baines b85ba9d457
gnu: guix-build-coordinator: Update to 0-18.88fbb69.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-18.88fbb69.
2021-02-10 08:26:53 +00:00
Tobias Geerinckx-Rice 4590ee9bd0
Revert "gnu: inetutils: Update to 2.0."
This reverts commit 55050e54a9, which
rebuilds xdg-utils and hence a good part of the world (1838 packages).

Reported by mroh in #guix.
2021-02-10 00:18:17 +01:00
Ludovic Courtès 55050e54a9
gnu: inetutils: Update to 2.0.
* gnu/packages/admin.scm (inetutils): Update to 2.0.
[source](patches): Remove.
* gnu/packages/patches/inetutils-hurd.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-02-09 23:38:33 +01:00
Oleg Pykhalov 5da7b2d050
gnu: telegram-desktop: Comment materialdecoration input.
This commit comments materialdecoration input in telegram-desktop because of
build failure.

* gnu/packages/telegram.scm
(telegram-desktop)[inputs]: Comment materialdecoration.
2021-02-10 01:18:23 +03:00
Christopher Baines 03b5db565e
gnu: guix-build-coordinator: Update to 0-17.b82494f.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-17.b82494f.
2021-02-09 22:13:41 +00:00
Kei Kebreau 311e8d72f1
gnu: wxmaxima: Update to 21.01.0.
* gnu/packages/maths.scm (wxmaxima): Update to 21.01.0.
[inputs]: Remove libomp.
2021-02-09 16:28:58 -05:00
Vincent Legoll 35089dca40
gnu: Xpdf: Update to 4.03.
* gnu/packages/pdf.scm (xpdf): Update to 4.03.
[source]: Update URL.
[build-system]: Use cmake-build-system.
[arguments]: Remove #:parallel-build?, #:configure-flags and #:phases.
[inputs]: Add cups, freetype & qtbase. Remove gs-fonts, lesstif, libpaper
libx11, libxext, libxp, libxpm & libxt.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-09 15:38:03 -05:00
Pierre Neidhardt 3aba721da7
gnu: sbcl-quri: Update to 20200209.
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 20200209.
2021-02-09 21:15:27 +01:00
Vincent Legoll d00380b007
gnu: vorbis-tools: Update to 1.4.2.
* gnu/packages/xiph.scm (vorbis-tools): Update to 1.4.2.
(source): Remove obsolete patches.
* gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch,
gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch,
gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-09 15:06:08 -05:00
Timotej Lazar 1e9f667708
gnu: qpdfview: Fix qt-5.15 compatibility.
* gnu/packages/pdf.scm (qpdfview)[source]: Add patch to include a missing
header.
* gnu/packages/patches/qpdfview-qt515-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-09 14:53:01 -05:00
Guillaume Le Vaillant e6034e3cf8
gnu: Add direwolf.
* gnu/packages/radio.scm (direwolf): New variable.
2021-02-09 17:48:05 +01:00
Oleg Pykhalov 3f95ac9188
gnu: streamlink: Update to 2.0.0.
* gnu/packages/video.scm (streamlink): Update to 2.0.0.
2021-02-09 19:45:05 +03:00
Julien Lepiller f2130228ed
gnu: php: Disable failing tests on arm.
* gnu/packages/php.scm (arguments)[phases]: Disable additional failing
tests on arm.
2021-02-09 17:09:49 +01:00
Pierre Neidhardt 63cc2737d6
gnu: sbcl-cl-webkit: Update to 20210205.
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20210205.
2021-02-09 16:53:47 +01:00
Greg Hogan 2571cf025e
gnu: python-scipy: Update to 1.6.0.
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.6.0.
[inputs]: Add pybind11.
[arguments]<#:phases>['change-home-dir]: New phase.

Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2021-02-09 16:33:12 +01:00
EuAndreh 53e2d8150e
gnu: jekyll: Update to 4.2.0.
* gnu/packages/ruby.scm (ruby-rouge-2): Remove variable.
* gnu/packages/ruby.scm (jekyll): Update to 4.2.0.
  [propagated-inputs]: Use newer version or ruby-rouge, add ruby-sassc
  and ruby-terminal-table.
2021-02-09 11:11:58 +01:00
EuAndreh d4be9f846b
gnu: Add ruby-terminal-table.
* gnu/packages/ruby.scm (ruby-terminal-table): New variable.
2021-02-09 11:11:52 +01:00
EuAndreh 8367ab5d92
gnu: ruby-mercenary: Update to 0.4.0.
* gnu/packages/ruby.scm (ruby-mercenary): Update to 0.4.0.
2021-02-09 11:11:52 +01:00
EuAndreh d603db9079
gnu: ruby-jekyll-sass-converter: Update to 2.1.0.
* gnu/packages/ruby.scm (ruby-jekyll-sass-converter): Update to 2.1.0.
2021-02-09 11:11:51 +01:00
EuAndreh c73585145f
gnu: ruby-sassc: Update to 2.4.0.
* gnu/packages/ruby.scm (ruby-sassc): Update to 2.4.0.
2021-02-09 11:11:51 +01:00
Nicolas Goaziou 2275634013
gnu: eless: Update to 0.6.
* gnu/packages/emacs-xyz.scm (eless): Update to 0.6.
[inputs]: Add emacs.
[arguments]: Move to copy-build-system.
2021-02-09 10:58:40 +01:00
Guillaume Le Vaillant 47df463393
gnu: postgis: Update to 3.1.1.
* gnu/packages/geo.scm (postgis): Update to 3.1.1.
  [inputs]: Add protobuf-c.
2021-02-09 10:45:43 +01:00
Ludovic Courtès aa8de80625
activation: Do not make setuid programs setgid-root [security].
Fixes <https://bugs.gnu.org/46395>.
Reported by Duncan Overbruck <mail@duncano.de>.

* gnu/build/activation.scm (activate-setuid-programs): Change TARGET
mode to not be setgid.
2021-02-09 10:06:02 +01:00
Mathieu Othacehe 91911b9382
services: cuirass: Move zabbix argument to the web process.
This is a follow-up of 703e5c92ee.

* gnu/services/cuirass.scm (cuirass-shepherd-service): Move "zabbix-uri"
argument to the web process.
2021-02-09 09:20:55 +01:00
Nicolas Goaziou 1f1cf91eab
gnu: emacs-openwith: Update to 20120531-0.5fe01de.
* gnu/packages/emacs-xyz.scm (emacs-openwith): Update to 20120531-0.5fe01de.
[source]: Switch to GitHub URI since Bitbucket's has been deleted.
[home-page]: Update URI accordingly.
2021-02-09 09:12:59 +01:00
Nicolas Goaziou a459ece1e3
gnu: emacs-hercules: Fix typo in description.
* gnu/packages/emacs-xyz.scm (emacs-hercules)[description]: Add two spaces
after a full stop.
2021-02-09 09:06:21 +01:00
Nicolas Goaziou 5c4fe5d5c7
gnu: emacs-hercules: Remove ".git" suffix from source URI.
* gnu/packages/emacs-xyz.scm (emacs-hercules): Remove ".git" suffix.
2021-02-09 09:05:48 +01:00
Nicolas Goaziou 424f60147c
gnu: emacs-hercules: Update to 0.3.1.
* gnu/packages/emacs-xyz.scm (emacs-hercules): Update to 0.3.1.
2021-02-09 09:05:13 +01:00
Nicolas Goaziou f4b0a1cd37
gnu: emacs-jsonnet-mode: Update home page.
* gnu/packages/emacs-xyz.scm (emacs-jsonnet-mode): Update home page, since the
last one is a redirect to it.
2021-02-09 09:02:21 +01:00
Nicolas Goaziou 7d410e91cf
gnu: emacs-gnuplot: Update to 0.8.0.
* gnu/packages/emacs-xyz.scm (emacs-gnuplot): Update to 0.8.0.
2021-02-09 08:58:52 +01:00
Nicolas Goaziou edbcf7ee9a
gnu: emacs-pyim: Update to 2.0.
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 2.0.
[propagated-inputs]: Add emacs-xr.
2021-02-09 08:55:15 +01:00
Vagrant Cascadian a65c935e29
gnu: bootloader: Update install-allwinner64-u-boot.
* gnu/bootloader/u-boot.scm (install-allwinner64-u-boot): Update to
  use a single file to install.
2021-02-08 17:21:34 -08:00
Leo Famulari 380a837c55
gnu: connman: Update to 1.39 [fixes CVE-2021-{26675,26676}].
* gnu/packages/connman.scm (connman): Update to 1.39.
2021-02-08 17:56:27 -05:00
Vincent Legoll b877e78d10
gnu: gnupg: Update to 2.2.27.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.27.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-02-08 23:50:36 +01:00
Léo Le Bouter fc5f9de568
gnu: guile-json-4: Update to 4.5.2.
* gnu/packages/guile.scm (guile-json-4): Update to 4.5.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-02-08 23:50:36 +01:00
Nicolas Goaziou 7c1a30f563
gnu: emacs-ox-twbs: Update to 1.1.4.
* gnu/packages/emacs-xyz.scm (emacs-ox-twbs): Update to 1.1.4.
2021-02-08 22:53:00 +01:00
Nicolas Goaziou 1b25ca8ebf
gnu: emacs-log4e: Update to 0.3.3.
* gnu/packages/emacs-xyz.scm (emacs-log4e): Update to 0.3.3.
2021-02-08 22:46:24 +01:00
Nicolas Goaziou e62dca7aa5
gnu: emacs-ht: Update to 2.3.
* gnu/packages/emacs-xyz.scm (emacs-ht): Update to 2.3.
2021-02-08 22:44:55 +01:00
Nicolas Goaziou 30649baead
gnu: emacs-evil-visualstar: Fix version number.
* gnu/packages/emacs-xyz.scm (emacs-evil-visualstar): Fix typo in version
number.
2021-02-08 22:36:06 +01:00
Nicolas Goaziou ccdf71df42
gnu: emacs-evil-nerd-commenter: Update to 3.5.3.
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.5.3.
[arguments]: Disable tests since they now require internet access.
2021-02-08 22:32:26 +01:00
Nicolas Goaziou 71af2eddea
gnu: emacs-evil-collection: Update to 0.0.5.
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.5.
2021-02-08 22:27:21 +01:00
Nicolas Goaziou 71c0a4509e
gnu: emacs-ido-ubiquitous: Update to 4.13.
* gnu/packages/emacs-xyz.scm (emacs-ido-ubiquitous): Update to 4.13.
2021-02-08 22:21:51 +01:00
Nicolas Goaziou 740018eff8
gnu: emacs-ido-completing-read+: Update to 3.12.
* gnu/packages/emacs-xyz.scm (emacs-ido-completing-read+): Update to 3.12.
[propagated-inputs]: Add emacs-s.
2021-02-08 22:20:11 +01:00
Nicolas Goaziou 336db0816d
gnu: emacs-writeroom: Update to 3.11.
* gnu/packages/emacs-xyz.scm (emacs-writeroom): Update to 3.11.
2021-02-08 22:17:50 +01:00
Nicolas Goaziou c1266a151f
gnu: emacs-visual-fill-column: Update to 2.2.
* gnu/packages/emacs-xyz.scm (emacs-visual-fill-column): Update to 2.2.
[source]: Move to a stable URI.
2021-02-08 22:16:07 +01:00
Nicolas Goaziou 41abf3b3a0
gnu: emacs-find-file-in-project: Update to 6.0.0.
* gnu/packages/emacs-xyz.scm (emacs-find-file-in-project): Update to 6.0.0.
2021-02-08 22:07:50 +01:00
Nicolas Goaziou 0a90e67908
gnu: emacs-mocker: Update to 0.5.0.
* gnu/packages/emacs-xyz.scm (emacs-mocker): Update to 0.5.0.
2021-02-08 22:06:28 +01:00
Nicolas Goaziou c6cb2cccd1
gnu: emacs-projectile: Update to 2.3.0.
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.3.0.
2021-02-08 22:04:43 +01:00
Nicolas Goaziou 4425f095f9
gnu: emacs-tide: Update to 4.0.2.
* gnu/packages/emacs-xyz.scm (emacs-tide): Update to 4.0.2.
2021-02-08 22:03:03 +01:00
Nicolas Goaziou e7dd881806
gnu: emacs-nodejs-repl: Update to 0.2.4.
* gnu/packages/emacs-xyz.scm (emacs-nodejs-repl): Update to 0.2.4.
2021-02-08 22:01:21 +01:00
Nicolas Goaziou 7abb893c98
gnu: emacs-undohist-el: Update to 0.2.1.
* gnu/packages/emacs-xyz.scm (emacs-undohist-el): Update to 0.2.1.
[origin]: Remove unnecessary patch.
* gnu/packages/patches/emacs-undohist-ignored.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Apply deletion.
2021-02-08 21:57:59 +01:00
Nicolas Goaziou fb5db4e3ab
gnu: emacs-posframe: Update to 0.8.5.
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 0.8.5.
2021-02-08 21:52:57 +01:00
Manolis Ragkousis ce60b47535
gnu: emulators: Update dolphin-emu to a working version.
* gnu/packages/emulators.scm (dolphin-emu): Update to a working commit
  version.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-02-08 21:12:59 +01:00
Leo Prikler cbd162702c
gnu: Add gnome-recipes.
* gnu/packages/gnome.scm (gnome-recipes): New variable.
2021-02-08 20:36:46 +01:00
Eric Bavier 8effdd1969
gnu: hdf5: Update to 1.8.22.
Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and
CVE-2018-17435

* gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22.
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed
patch.
* gnu/local/mk (dist_patch_DATA): Remove it.
2021-02-08 13:25:34 -06:00
Julien Lepiller a613abeb43
gnu: Add python-psptool.
* gnu/packages/embedded.scm (python-psptool): New variable.
2021-02-08 20:15:06 +01:00
Hartmut Goebel 823cca8bce
gnu: tryton applcations and framework: Update to 5.8.2.
* gnu/packages/tryton.scm (trytond, tryton, python-trytond-stock,
  python-trytond-stock-lot): Update to 5.8.2.
  (python-proteus, python-trytond-account, python-trytond-account-invoice,
  python-trytond-account-invoice-stock, python-trytond-account-product,
  python-trytond-analytic-account, python-trytond-company,
  python-trytond-country, python-trytond-currency, python-trytond-party,
  python-trytond-product, python-trytond-purchase,
  python-trytond-purchase-request, python-trytond-stock-supply):
  Update to 5.8.1.
2021-02-08 19:47:13 +01:00
Hartmut Goebel 08ec571c28
gnu: tryton.scm: Remove unused native inputs.
Python is already provided by the python build-system,
thus there is not need for listing it a native input.

* gnu/packages/tryton.scm (python-trytond-account,
  python-trytond-account-invoice, python-trytond-account-invoice-stock,
  python-trytond-account-product, python-trytond-analytic-account,
  python-trytond-company, python-trytond-country, python-trytond-currency,
  python-trytond-party, python-trytond-product, python-trytond-purchase,
  python-trytond-purchase-request, python-trytond-stock,
  python-trytond-stock-lot, python-trytond-stock-supply)[native-inputs]:
  Remove python.
2021-02-08 19:47:13 +01:00
Hartmut Goebel e421702380
gnu: tryton.scm: Reorder packages.
Move proteus near the top, as it is a package to be used by other
ications.  Sort all "tryton modules" (python-trytond-*) alphabetically.

* gnu/packages/tryton.scm (python-proteus): Move behind tryton.
  (python-trytond-account, python-trytond-account-invoice,
  python-trytond-account-invoice-stock, python-trytond-account-product,
  python-trytond-analytic-account, python-trytond-company,
  python-trytond-country, python-trytond-currency, python-trytond-party,
  python-trytond-product, python-trytond-purchase,
  python-trytond-purchase-request, python-trytond-stock,
  python-trytond-stock-lot, python-trytond-stock-supply): Sort alphabetically.
2021-02-08 19:47:13 +01:00
Hartmut Goebel 7109410000
gnu: tryton: Rephrase synopsis and description.
* gnu/packages/tryton.scm (tryton)[synopsis, description] Rephrase.
2021-02-08 19:47:12 +01:00
Hartmut Goebel 0ad07005d4
gnu: Rename "python-trytond" to "trytond".
Trytond is an application, and only python libraries should have
the "python-" prefix.

* gnu/packages/tryton.scm (python-trytond): Rename to...
  (trytond): ...this. [synopsis] Rephrase.
  (python-trytond): Redefine as a deprecated alias.
  (python-trytond-account, python-trytond-account-invoice,
  python-trytond-account-invoice-stock, python-trytond-account-product,
  python-trytond-analytic-account, python-trytond-company,
  python-trytond-country, python-trytond-currency, python-trytond-party,
  python-trytond-product, python-trytond-purchase,
  python-trytond-purchase-request python-trytond-stock,
  python-trytond-stock-lot, python-trytond-stock-supply)[propagated-inputs]:
  Rename python-trytond to trytond.
2021-02-08 19:47:12 +01:00
Guillaume Le Vaillant 4cd8bab7d4
gnu: qgis: Update to 3.16.3.
* gnu/packages/geo.scm (qgis): Update to 3.16.3.
  [inputs]: Add protobuf.
  [arguments]: Update 'configure-pyqt5-sip-path' and 'check' phases.
2021-02-08 17:07:52 +01:00
Guillaume Le Vaillant 5e686e0a2c
gnu: qgis: Disable SAGA.
QGIS support for SAGA is currently not working.

* gnu/packages/geo.scm (qgis)[inputs]: Remove saga.
  [arguments]: Remove PATH wrapping for saga.
2021-02-08 17:07:52 +01:00
Julien Lepiller 48650b0c35
gnu: php: Update to 7.4.15.
* gnu/packages/php.scm (php): Update to 7.4.15.
2021-02-08 16:36:21 +01:00
Vagrant Cascadian 15990546a5
gnu: u-boot-puma-rk3399: Switch to using arm-trusted-firmware-rk3399.
* gnu/packages/bootloaders.scm (u-boot-puma-rk3399)[native-inputs]:
  Add arm-trusted-firmware-rk3399.
  Remove arm-trusted-firmware-puma-rk3399 and rk3399-cortex-m0.
* gnu/packages/firmware.scm (arm-trusted-firmware-puma-rk3399,
  rk3399-cortex-m0): Remove obsolete variables.
* gnu/bootloader/u-boot.scm (install-puma-rk3399-u-boot): Install
  idbloader.img.
2021-02-08 07:18:41 -08:00
Vagrant Cascadian be33acc260
gnu: arm-trusted-firmware: Update to 2.4.
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.4.
  [native-inputs]: Use gcc-9.
2021-02-08 07:18:39 -08:00
Vagrant Cascadian 0424d1fffd
gnu: u-boot: Update to 2021.01.
* gnu/packages/bootloaders (u-boot): Update to 2021.01.
  (u-boot-pinebook-pro-rk3399): Add patch-pinebook-pro-config phase.
2021-02-08 07:18:35 -08:00
Mathieu Othacehe 703e5c92ee
services: cuirass: Add Zabbix support.
* gnu/services/cuirass.scm (<cuirass-configuration>)[zabbix-uri]: New field.
(cuirass-shepherd-service): Honor it.
2021-02-08 13:44:06 +01:00
Mathieu Othacehe 3bbbaec86c
gnu: cuirass: Update to 0.0.1-67.23688a0.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-67.23688a0.
2021-02-08 13:44:06 +01:00
Efraim Flashner b9f9f9a3f4
gnu: perl-test-trailingspace: Update to 0.0600.
* gnu/packages/perl-check.scm (perl-test-trailingspace): Update to 0.0600.
2021-02-08 13:46:26 +02:00
Efraim Flashner 51f8be6831
gnu: perl-test-simple: Update to 1.302183.
* gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302183.
2021-02-08 13:46:26 +02:00
Efraim Flashner 1e4565eabc
gnu: perl-test-runvalgrind: Update to 0.2.2.
* gnu/packages/perl-check.scm (perl-test-runvalgrind): Update to 0.2.2.
2021-02-08 13:46:25 +02:00
Efraim Flashner 072ef70a8e
gnu: perl-test-requires: Update to 0.11.
* gnu/packages/perl-check.scm (perl-test-requires): Update to 0.11.
2021-02-08 13:46:25 +02:00
Efraim Flashner d2cb69dfd4
gnu: perl-test-taint: Update to 1.08.
* gnu/packages/perl-check.scm (perl-test-taint): Update to 1.08.
2021-02-08 13:46:25 +02:00
Efraim Flashner bddb78e01a
gnu: perl-test-warnings: Update to 0.030.
* gnu/packages/perl-check.scm (perl-test-warnings): Update to 0.030.
2021-02-08 13:46:25 +02:00
Efraim Flashner 6b1fb33bc7
gnu: perl-test-warn: Update to 0.36.
* gnu/packages/perl-check.scm (perl-test-warn): Update to 0.36.
2021-02-08 13:46:25 +02:00
Efraim Flashner 0fbbdb2070
gnu: perl-time-local: Update to 1.30.
* gnu/packages/perl.scm (perl-time-local): Update to 1.30.
2021-02-08 13:46:25 +02:00
Efraim Flashner d21ce00a38
gnu: perl-xml-writer: Update to 0.900.
* gnu/packages/perl.scm (perl-xml-writer): Update to 0.900.
2021-02-08 13:46:25 +02:00