0118fe6f85
gnu: python-plotnine: Reformat with guix style.
...
* gnu/packages/python-science.scm (python-plotnine): Reformat with guix style.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-18 21:04:21 +00:00
662ae5eac2
gnu: python-plotnine: Fix build.
...
* gnu/packages/python-science.scm (python-plotnine): Fix build.
[arguments]<#:test-flags>: Add test_custom_shape to ignored tests.
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-18 20:56:59 +00:00
dac977ea4e
gnu: Add python-pandera.
...
* gnu/packages/python-science.scm (python-pandera): New variable.
2024-01-17 11:18:00 +01:00
23cb6187f6
gnu: Add python-pandas-stubs.
...
* gnu/packages/python-science.scm (python-pandas-stubs): New variable.
2024-01-17 11:18:00 +01:00
d79fd9adc3
gnu: python-deepdish: Fix build.
...
* gnu/packages/python-science.scm (python-deepdish): Fix build.
[build-system]: Swap to pyproject-build-system.
[arguments]<#:test-flags>: Silent failing tests.
Change-Id: I4c4df66fc80434aaf5b95a7a62b83e0c1c02a4c6
2024-01-16 21:43:30 +00:00
e31e5928ae
gnu: python-xarray: Update to 2023.12.0.
...
* gnu/packages/python-science.scm (python-xarray): Update to 2023.12.0.
[arguments]: Ignore one test file.
[propagated-inputs]: Add python-packaging.
Change-Id: I6b70f59670f7bc8b56787fe3436579db8ac113bb
2024-01-16 12:44:37 +01:00
a8c1d812a0
gnu: python-pandas: Update to 1.5.3.
...
* gnu/packages/python-science.scm (python-pandas): Update to 1.5.3.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; move test flags to #:test-flags; add phase
'patch-build-system; fix substitution of "which" executable; remove
'enable-parallel-build; remove custom 'check phase; add 'pre-check phase.
[propagated-inputs]: Add python-matplotlib.
[native-inputs]: Replace python-cython with python-cython-0.29.35.
Change-Id: I9d09971f707b925f469e29be67fe040c181314ff
2024-01-16 12:44:37 +01:00
998df6e047
gnu: python-scikit-optimize: Make compatible with latest sklearn.
...
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Add
snippet to fix outdated use of "max_features" option.
Change-Id: I4272ffc82b4951315b74b4adee27527e8d513fca
2024-01-16 12:44:36 +01:00
e2c76bdd83
gnu: python-scikit-image: Update to 0.22.0.
...
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; remove custom 'build phase; simplify 'check
phase; enable all tests.
[propagated-inputs]: Add python-lazy-loader.
[native-inputs]: Add meson-python, python-numpydoc, python-packaging, and
python-wheel.
Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
2024-01-16 12:44:34 +01:00
accd091fff
gnu: python-scipy: Update to 1.11.4.
...
* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4.
[arguments]: Use mesonpy backend.
[inputs]: Replace pybind11 with pybind11-2.10.
[native-inputs]: Add python-click, python-doit, python-pooch, and
python-pydevtool; replace python-cython with python-cython-0.29.35.
Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
2024-01-16 12:44:34 +01:00
6c453e04b8
gnu: python-distributed: Disable breaking test.
...
This test times out since the merge of the mesa-updates branch.
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_tell_workers_when_peers_have_left.
Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
2024-01-10 20:35:28 +01:00
0ec25720ab
gnu: python-vaex-core: Add missing input.
...
* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add
python-click.
Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6
2023-12-15 16:13:14 +01:00
b2d433d485
gnu: python-pytensor: Update to 2.18.1.
...
* gnu/packages/python-science.scm (python-pytensor): Update to 2.18.1.
Change-Id: I7992d8a00c378c008995df3d026c3e05c235ae6d
2023-12-05 16:41:52 -03:00
504e621445
gnu: python-gpy: Adjust for newer python.
...
* gnu/packages/python-science.scm (python-gpy)[source]: Add snippet to
adjust python module imports.
Change-Id: I0772febb97d75e0a0caa331913c9e7453d11e70d
2023-12-05 13:43:42 +02:00
8803100072
gnu: Add python-pyfma.
...
* gnu/packages/python-science.scm (python-pyfma): New variable.
Change-Id: I354d3d56f2799c8c9ac9b868fcacbf88dcc5c25d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-12-04 22:26:37 +01:00
f76ffc3ea6
gnu: Add python-meshzoo.
...
* gnu/packages/python-science.scm (python-meshzoo): New variable.
Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-12-04 22:26:37 +01:00
416ae9ad89
gnu: Add python-tdda.
...
* gnu/packages/python-science.scm (python-tdda): New variable.
Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-11-15 18:29:38 +01:00
43d9fa0802
gnu: python-pytensor: Update to 2.17.3.
...
* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3.
Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45
2023-11-03 19:25:36 -03:00
a7d56852e3
gnu: Add python-salib.
...
* gnu/packages/python-science.scm (python-salib): New variable.
2023-11-03 19:25:35 -03:00
d07e75a4ce
gnu: python-trimesh: Update to 3.23.5.
...
* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:26:55 +01:00
4aa6a924b2
gnu: python-pyvista: Update to 0.42.3.
...
* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:26:23 +01:00
e9c0bb0341
gnu: python-distributed: Disable failing tests.
...
* gnu/packages/python-science.scm (python-distributed): Disable failing tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-08 23:43:50 +02:00
04b31ce1f8
gnu: Add python-numpoly.
...
* gnu/packages/python-science.scm (python-numpoly): New variable.
2023-09-30 10:37:47 -03:00
645aeaf52d
gnu: python-pytensor: Update to 2.14.2.
...
* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2.
[native-inputs]: Add python-pytest-mock.
2023-08-05 18:40:01 -03:00
746416b44a
gnu: Add python-scikit-fem.
...
* gnu/packages/python-science.scm (python-scikit-fem): New variable.
2023-07-29 14:25:03 -03:00
01412c6c6a
gnu: python-distributed: Update to 2023.7.0.
...
* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
2023-07-15 13:36:02 +02:00
ea81a0417a
gnu: Add python-plotnine.
...
* gnu/packages/python-science.scm (python-plotnine): New variable.
2023-07-13 22:29:24 +02:00
d4e9ad2d42
gnu: python-pandas-flavor: Update to 0.5.0.
...
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0.
[propagated-inputs]: Add python-lazy-loader and python-packaging.
[home-page]: Update.
2023-06-29 17:01:56 +01:00
2a7ca17068
gnu: python-distributed: Disable timeout test.
...
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_nanny_timeout, because it times out.
2023-06-29 12:01:22 +02:00
5cf9880dd4
gnu: python-trimesh: Update to 3.22.1.
...
* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1.
[arguments]<#:phases>: Update path in 'fix-build' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-25 23:46:03 +02:00
cbcab52fd1
gnu: Add python-pytensor.
...
* gnu/packages/python-science.scm (python-pytensor): New variable.
2023-06-25 10:48:05 -03:00
a38f5a71ad
gnu: Add python-xarray-einstats.
...
* gnu/packages/python-science.scm (python-xarray-einstats): New variable.
2023-06-25 10:43:22 -03:00
b08a1f3ce1
gnu: python-xarray: Update to 2023.6.0.
...
* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the check phase.
2023-06-25 10:43:22 -03:00
6bc2fbc14c
gnu: Add python-einops.
...
* gnu/packages/python-science.scm (python-einops): New variable.
2023-06-25 10:43:22 -03:00
24fc0d506a
gnu: python-pyvista: Update to 0.39.1.
...
* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1.
[propagated-inputs]: Add python-pooch, remove python-appdirs.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-06-20 22:16:14 +01:00
4557c83a7d
gnu: python-distributed: Update to 2023.4.1.
...
* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
2023-05-11 15:59:22 +02:00
96c51a9dbf
gnu: python-scikit-optimize: Fix build with newer numpy and sklearn.
...
* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
2023-05-10 19:27:07 +02:00
12c529c071
gnu: python-bottleneck: Honor #:tests? flag.
...
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
2023-05-08 12:42:10 +03:00
4a23812c7c
gnu: python-bottleneck: Update to 1.3.7.
...
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
2023-05-08 12:42:09 +03:00
5409ae48af
gnu: python-distributed: Fix build.
...
* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
2023-04-26 11:17:41 +02:00
3bacd3c76a
Merge branch 'master' into core-updates.
...
Conflicts:
gnu/local.mk
gnu/packages/build-tools.scm
gnu/packages/certs.scm
gnu/packages/check.scm
gnu/packages/compression.scm
gnu/packages/cups.scm
gnu/packages/fontutils.scm
gnu/packages/gnuzilla.scm
gnu/packages/guile.scm
gnu/packages/ibus.scm
gnu/packages/image-processing.scm
gnu/packages/linux.scm
gnu/packages/music.scm
gnu/packages/nss.scm
gnu/packages/pdf.scm
gnu/packages/python-xyz.scm
gnu/packages/qt.scm
gnu/packages/ruby.scm
gnu/packages/shells.scm
gnu/packages/tex.scm
gnu/packages/video.scm
gnu/packages/vulkan.scm
gnu/packages/web.scm
gnu/packages/webkit.scm
gnu/packages/wm.scm
2023-04-14 17:15:08 -04:00
a3bfb86738
gnu: python-scipy: Update to 1.10.1.
...
* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add #:build-backend argument.
Remove loosen-requirements, build and install phases.
[native-inputs]: Remove python-pypa-build.
2023-04-11 17:22:35 -04:00
896982f357
gnu: python-scikit-allel: Use pyproject-build-system.
...
* gnu/packages/python-science.scm (python-scikit-allel): Move up to create
alphabetic order.
[build-system]: Use pyproject-build-system.
[arguments]: Provide test flags instead of overriding 'check phase; split out
build step into new 'build-ext phase. Disable roh_mhmm tests.
2023-03-24 18:23:01 +01:00
6d132c5ebf
gnu: Add python-scikit-optimize.
...
* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
2023-03-24 18:03:30 +01:00
34f684371e
gnu: Add python-libneuroml.
...
* gnu/packages/python-science.scm (python-libneuroml): New variable.
2023-03-21 13:58:42 +01:00
9f882daf11
gnu: Add python-pylems.
...
* gnu/packages/python-science.scm (python-pylems): New variable.
2023-03-21 13:56:47 +01:00
e24b9b42bc
gnu: Add python-pydicom.
...
* gnu/packages/python-science.scm (python-pydicom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-08 16:11:45 +01:00
7f380a2e26
gnu: python-sgp4: Move to astronomy.
...
* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm.
[description]: Expand description, annotate acronyms, add link to CelesTrak.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05 22:22:20 +01:00
6468d9c131
gnu: python-sgp4: Update to 2.21.
...
The latest version passes build on aarch64-linux system.
* gnu/packages/python-science.scm (python-sgp4): Update to 2.21.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05 22:22:20 +01:00
9ddc4e5b03
gnu: python-msgpack-numpy: Update to 0.4.8.
...
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
2022-12-02 15:04:15 +01:00
Troy Figiel
Sharlatan Hellseher
Ricardo Wurmus
Vinicius Monego
Efraim Flashner
Felix Gruber
Paul A. Patience
Nicolas Graves
Arun Isaac
Maxim Cournoyer
Lars-Dominik Braun
Antero Mejr
Navid Afkhami