* guix/scripts/system.scm (service-upgrade): Move to...
* gnu/services/shepherd.scm (shepherd-service-upgrade): ... here.
* tests/system.scm ("service-upgrade: nothing to do", "service-upgrade:
one unchanged, one upgraded, one new", "service-upgrade: service
depended on is not unloaded", "service-upgrade: obsolete services that
depend on each other"): Move to...
* tests/services.scm: ... here. Adjust to 'service-upgrade' rename.
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2016-08/msg01470.html>.
* guix/scripts/system.scm (service-upgrade)[live-service-required?]: New
procedure.
[obsolete?]: Use it.
* tests/system.scm ("service-upgrade: service depended on is not
unloaded", "service-upgrade: obsolete services that depend on each
other"): New tests.
* guix/scripts/system.scm (service-upgrade)[essential?]: SERVICE is now
a <live-service>.
[lookup-target, lookup-live, running?, stopped, obsolete?]: New
procedures.
[to-load, to-unload]: Use them. TO-UNLOAD is now a list of
<live-service>.
(call-with-service-upgrade-info): Extract symbols from TO-UNLOAD.
* tests/system.scm ("service-upgrade: one unchanged, one upgraded, one
new"): Adjust accordingly.
* gnu/services/shepherd.scm (shepherd-service-lookup-procedure): New
procedure.
(shepherd-service-back-edges)[provision->service]: Use it.
* tests/services.scm ("shepherd-service-lookup-procedure"): New test.
* guix/scripts/system.scm (service-upgrade): New procedure, with code
from...
(call-with-service-upgrade-info): ... here. Use it.
* tests/system.scm (live-service, service-upgrade): New variables.
("service-upgrade: nothing to do", "service-upgrade: one unchanged, one
upgraded, one new"): New tests.
* guix/scripts/lint.scm (check-description-style): Emit a warning if
trademark signs found in description.
* tests/lint.scm (description: may not contain trademark signs): Add
test.
Reported by Ting-Wei Lan <lantw44@gmail.com>.
This is a followup to 1250034d5a.
* tests/guix-environment-container.sh (mount_test_code): Reverse order
of 'string-prefix?' arguments.
* guix/scripts/publish.scm (narinfo-string): Force %NO-COMPRESSION when
STORE-PATH matches 'compressed-file?'.
* guix/utils.scm (compressed-file?): New procedure.
* tests/publish.scm ("/*.narinfo for a compressed file"): New test.
Fixes <http://bugs.gnu.org/22004>.
Reported by Ting-Wei Lan <lantw44@gmail.com>.
* tests/guix-environment-container.sh (mount_test_code): Add 'match'
clause to ignore "/"; augment clause that ignores specific file system
types such that it does not ignore parent mount points.
* tests/guix-register.sh: When launching guix-daemon, add retry loop
around 'open-connection'. This fixes test failures that could occur
under heavy load where the daemon's socket file wouldn't be ready yet
when the client connects.
This way, we no longer have this annoying warning:
$ guix build guile -n
guix build: warning: ambiguous package specification `guile'
guix build: warning: choosing guile-2.0.11 from gnu/packages/guile.scm:128:2
* gnu/packages/commencement.scm (guile-final): Use 'hidden-package'.
* tests/packages.scm ("fold-packages, hidden package"): New test.
Fixes <http://bugs.gnu.org/24060>.
Reported by Chris Marusich <cmmarusich@gmail.com>.
* tests/publish.scm (http-get-port): Explicitly call
'open-socket-for-uri' and add calls to 'setvbuf'.
Fixes <http://bugs.gnu.org/24029>.
Reported by Dylan Jeffers <sapientech@openmailbox.org>.
* guix/profiles.scm (package->manifest-entry): Change #:output to
default to "out".
(packages->manifest): Add 'package?' in second 'match' clause.
* tests/profiles.scm ("package->manifest-entry defaults to \"out\""):
New test.
* guix/scripts/environment.scm (create-environment): Set
'GUIX_ENVIRONMENT' to PROFILE.
* tests/guix-environment.sh: Test it.
* doc/guix.texi (Invoking guix environment): Document it.
Fixes <http://bugs.gnu.org/23997>.
* guix/import/pypi.scm (guix-package->pypi-name): Rewrite using
'basename' and 'hyphen-package-name->name+version'.
* tests/pypi.scm ("guix-package->pypi-name, old URL style")
("guix-package->pypi-name, new URL style"): New tests.
* guix/scripts/publish.scm (show-help, %options): Add '--compression'.
(<compression>): New record type.
(%no-compression, %default-gzip-compression): New variables.
(%default-options): Add 'compression' key.
(narinfo-string): Add #:compression parameter and honor it.
(render-narinfo): Likewise.
(render-nar): Likewise.
<top level>: Add call to 'declare-header!'.
(swallow-zlib-error): New macro.
(nar-response-port): New procedure.
(http-write): Add call to 'force-output'. Use 'nar-response-port'
instead of 'response-port'. Use 'swallow-zlib-error'.
(make-request-handler): Add #:compression parameter and honor it. Add
"nar/gzip" URL handler.
(run-publish-server): Add #:compression parameter and honor it.
(guix-publish): Honor --compression.
* tests/publish.scm (http-get-port, wait-until-ready): New procedures.
<top level>: Run main server with "-C0". Call 'wait-until-ready'.
("/nar/gzip/*", "/*.narinfo with compression"): New tests.
* doc/guix.texi (Invoking guix publish): Document it.
This allows mapped devices listed in 'dependencies' to be properly taken
into account.
Reported by Andreas Enge <andreas@enge.fr>.
* gnu/system.scm (mapped-device-user): Check whether DEVICE is a member
of the 'dependencies' of FS.
* tests/system.scm (%luks-device, %os-with-mapped-device): New variables.
("operating-system-user-mapped-devices")
("operating-system-boot-mapped-devices")
("operating-system-boot-mapped-devices, implicit dependency"): New tests.
Fixes <http://bugs.gnu.org/23969>.
Reported by Vincent Legoll <vincent.legoll@gmail.com>.
* guix/records.scm (report-invalid-field-specifier): New procedure.
* tests/records.scm ("define-record-type* & wrong field specifier"): New
test.
* guix/scripts/lint.scm (validate-uri): Upon 200 http-response, check
the 'response-content-length' and emit a warning when it is <= 1000.
* tests/lint.scm (call-with-http-server): Add 'data' parameter.
(with-http-server): Likewise.
(%long-string): New variable.
("home-page: 200"): Pass %LONG-STRING to 'with-http-server'.
("home-page: 404", "source: 200", "source: 404"): Likewise.
("home-page: 200 but short length"): New test.
("source: 200 but short length"): New test.
* guix/gexp.scm (<gexp>)[modules]: New field.
(gexp-modules): New procedure.
(gexp->derivation): Use it and append the result to %MODULES.
Update docstring to mark #:modules as deprecated.
(current-imported-modules, with-imported-modules): New macros.
(gexp): Pass CURRENT-IMPORTED-MODULES as second argument to 'gexp'.
(gexp->script): Use and honor 'gexp-modules'; define '%modules'.
* tests/gexp.scm ("gexp->derivation & with-imported-modules")
("gexp->derivation & nested with-imported-modules")
("gexp-modules & ungexp", "gexp-modules & ungexp-splicing"):
New tests.
("program-file"): Use 'with-imported-modules'. Remove #:modules
argument to 'program-file'.
* doc/guix.texi (G-Expressions): Document 'with-imported-modules'.
Mark #:modules of 'gexp->derivation' as deprecated.
* emacs/guix-devel.el: Add syntax for 'with-imported-modules'.
(guix-devel-keywords): Add it.
* .dir-locals.el: Likewise.
* guix/import/cpan.scm (fix-source-url): New procedure.
(cpan-module->sexp): Use it to construct our source-url.
* tests/cpan.scm: Add tests for fix-source-url.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Reported by myglc2 <myglc2@gmail.com>
at <http://bugs.gnu.org/23836>.
* tests/containers.scm (skip-if-unsupported): New procedure.
Call it before each test.
* doc/guix.tex (Invoking guix import): Mention that the pypi importer
works better with "unzip".
* guix/import/pypi.scm (latest-wheel-release,
wheel-url->extracted-directory): New procedures.
* tests/pypi.scm (("pypi->guix-package, wheels"): New test.
Fixes <http://bugs.gnu.org/21888>.
Reported by iyzsong@member.fsf.org (宋文武).
* guix/scripts/publish.scm (narinfo-string): Use
'encode-and-join-uri-path' instead of 'string-append' to compute URL.
* tests/publish.scm ("/*.narinfo with properly encoded '+' sign"):
("/nar/ with properly encoded '+' sign"): New tests.
* guix/build/bournish.scm (%bournish-language): Add a joiner to SCHEME.
Compile only to Scheme.
* tests/bournish.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
Reported by Federico Beffa <beffa@ieee.org>
at <https://lists.gnu.org/archive/html/guix-devel/2016-05/msg00928.html>.
* nix/libstore/local-store.cc (LocalStore::querySubstitutablePaths)
(LocalStore::querySubstitutablePathInfos): Return when
'settings.useSubstitutes' is false.
* tests/store.scm ("references/substitutes missing reference info"):
Make sure to return #f on failure.
* tests/store.scm ("substitutable-path-info when substitutes are turned off"):
("substitutable-paths when substitutes are turned off"): New tests.
Fixes <http://bugs.gnu.org/23306>.
* gnu/build/linux-container.scm (run-container): Use 'socketpair'
instead of 'pipe'. Rename 'in' to 'child' and 'out' to 'parent'. Send
a 'ready message or an exception argument list from the child to the
parent; adjust the parent accordingly.
* tests/containers.scm ("call-with-container, mnt namespace, wrong bind
mount"): New test.
* tests/guix-environment-container.sh: Add test with
--expose=/does-not-exist.
On a warm cache, "guix lint -c cve vorbis-tools" goes down
from 6.5s to 2.4s.
* guix/cve.scm (cpe->package-name): Change to return two values instead
of a pair.
(cpe->product-alist): New procedure.
(%parse-vulnerability-feed): Use it instead of 'filter-map'.
(fetch-vulnerabilities): Bump sexp format version to 1.
(vulnerabilities->lookup-proc): Adjust accordingly. When #:version is
omitted, return a list of vulnerabilities instead of a list of
version/vulnerability pairs.
* tests/cve.scm (%expected-vulnerabilities)
("vulnerabilities->lookup-proc): Adjust accordingly.
Previously, 'guix package -i emacs --with-source=./emacs-42.tar.gz'
would fail to use "42" as the version number in the manifest entry.
Reported by piyo on #guix.
* guix/scripts/package.scm (process-actions)[transform-entry]: Inherit
the version number from the result of TRANSFORM when it's a package.
* tests/guix-package.sh: Test it.
Reported by Malcolm, Cook <MEC@stowers.org>.
* tests/guix-lint.sh: Pass '-c synopsis,description' in first invocation
so we don't run the 'cve' checker.
Fixes <http://bugs.gnu.org/23132>.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/build/graft.scm (rename-matching-files): New procedure.
(rewrite-directory): Use it.
* tests/grafts.scm ("graft-derivation, renaming"): New test.
* guix/derivations.scm (derivation-input<?): New procedure.
(write-derivation)[coalesce-duplicate-inputs]: Remove.
Remove calls to 'sort'.
(coalesce-duplicate-inputs): New procedure.
(derivation-hash): Sort INPUTS and use 'coalesce-duplicate-inputs'.
(derivation)[input->derivation-input]
[coalesce-duplicate-inputs]: New procedures.
Sort OUTPUTS, INPUTS, and ENV-VARS.
* tests/derivations.scm ("read-derivation vs. derivation"): New test.
This procedure was redundant with SRFI-1's 'break'.
* guix/utils.scm (split): Remove.
* tests/utils.scm ("split, element is in list")
("split, element is not in list"): Remove.
* guix/build/syscalls.scm (bits->symbols-body, define-bits)
(local-flags): New macros.
(TCSANOW, TCSADRAIN, TCSAFLUSH): New variables.
(<termios>): New record type.
(%termios): New C structure.
(tcgetattr, tcsetattr): New procedures.
* tests/syscalls.scm ("tcgetattr ENOTTY", "tcgetattr")
("tcsetattr"): New tests.
* guix/scripts/lint.scm (check-vulnerabilities): Check the replacement
of PACKAGE.
* tests/lint.scm ("cve: patched vulnerability in replacement"): New test.
Suggested by John Darrington.
* guix/scripts/lint.scm (check-description-style): Emit a warning when
DESCRIPTION is not a string.
(check-synopsis-style): Likewise.
(check-gnu-synopsis+description): Likewise.
* tests/lint.scm ("description: not a string", "synopsis: not a
string"): New tests.
* guix/build/syscalls.scm (terminal-columns): Call
'terminal-window-size' only when PORT is a file port.
* tests/syscalls.scm ("terminal-columns non-file port"): New test.
* guix/build/syscalls.scm (TIOCGWINSZ): New macro.
(<window-size>): New record type.
(winsize): New C struct.
(winsize-struct): New variable.
(terminal-window-size, terminal-columns): New procedures.
Before that '.log' files for scheme tests were fragmented and not
included in test-suite.log. This unifies the semantics of SRFI-64 API
with Automake test suite.
* build-aux/test-driver.scm: New file.
* Makefile.am (SCM_LOG_DRIVER, AM_SCM_LOG_DRIVER_FLAGS): New variables.
(SCM_LOG_COMPILER, AM_SCM_LOG_FLAGS): Delete variables.
(AM_TESTS_ENVIRONMENT): Set GUILE_AUTO_COMPILE to 0.
* test-env.in: Silence guix-daemon.
* doc/guix.texi (Running the Test Suite): Describe how to display the
detailed results. Bug reports require only 'test-suite.log' file.
* tests/base32.scm, tests/build-utils.scm, tests/builders.scm,
tests/challenge.scm, tests/cpan.scm, tests/cpio.scm, tests/cran.scm,
tests/cve.scm, tests/derivations.scm, tests/elpa.scm,
tests/file-systems.scm, tests/gem.scm, tests/gexp.scm,
tests/gnu-maintenance.scm, tests/grafts.scm, tests/graph.scm,
tests/gremlin.scm, tests/hackage.scm, tests/hash.scm,
tests/import-utils.scm, tests/lint.scm, tests/monads.scm, tests/nar.scm,
tests/packages.scm, tests/pk-crypto.scm, tests/pki.scm,
tests/profiles.scm, tests/publish.scm, tests/pypi.scm,
tests/records.scm, tests/scripts-build.scm, tests/scripts.scm,
tests/services.scm, tests/sets.scm, tests/size.scm, tests/snix.scm,
tests/store.scm, tests/substitute.scm, tests/syscalls.scm,
tests/system.scm, tests/ui.scm, tests/union.scm, tests/upstream.scm,
tests/utils.scm: Don't exit at the end of test groups.
* tests/containers.scm: Likewise. Use 'test-skip' instead of exiting
with error code 77.
Switching to execlp means that the process spawned in a container is PID
1, which obsoleted one of the 'guix environment --container' tests
because the init process can't be killed in the usual manner.
* guix/scripts/environment.scm (launch-environment/fork): New procedure.
(launch-environment): Switch from system* to execlp. Add handler for
SIGINT.
(guix-environment): Use launch-environment/fork.
* tests/guix-environment-container.sh: Replace abnormal exit test with
one that works now that the spawned process is PID 1.
Fixes <http://bugs.gnu.org/22612>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.
* tests/syscalls.scm ("network-interfaces returns one or more
interfaces"): Accept 'interface-address' value of #f.
* guix/scripts/build.scm: Use the right 'package-name->name+version'
procedure. Fixes a regression introduced in
1b846da8c3.
* tests/scripts-build.scm ("options->transformation, with-source, with
version"): New test.
Suggested by Jookia.
* guix/derivations.scm (&file-search-error): New error condition.
(search-path*): Raise it when 'search-path' returns #f.
* guix/gexp.scm (search-path*): Remove.
* guix/ui.scm (call-with-error-handling): Add case for
'file-search-error?'.
* tests/derivations.scm ("build-expression->derivation and invalid
module name"): New test.
Fixes <http://bugs.gnu.org/23062>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.
* guix/import/pypi.scm (make-pypi-sexp): Check whether 'pypi-uri'
returns SOURCE-URL and fall back to the full URL otherwise.
* tests/pypi.scm ("pypi->guix-package"): Adjust expected URI
accordingly.
Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
Before that, 'guix build --substitute-urls=""' would lead to using the
daemon's own URL list instead of the empty list. The 'or*' hack, which
is to blame, had become unnecessary since commit
fb4bf72be3.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/scripts/substitute.scm (or*): Remove.
(%cache-urls): Use 'or' instead of 'or*'.
* tests/store.scm ("substitute query, alternating URLs"): Add test with
empty URL list.
* doc/guix.texi (Common Build Options): Mention the empty string.
Previously, the resulting 'signature-urls' would contain N times the
same URL.
* guix/upstream.scm (coalesce-sources): Fix TWO in 'signature-urls'.
* tests/upstream.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
Fixes a thinko introduced in 1b846da8c3
that would lead to a backtrace when looking for an unknown package.
* gnu/packages.scm (%find-package): Correct logic when checking for
FALLBACK?.
Fixes a typo introduced in 1b846da8c3 that
would lead to a backtrace when using the deprecated syntax.
* gnu/packages.scm (%find-package): Turn the first argument to
'call-with-values' into a thunk. Use #:select instead of '@' to select
the right 'package-name->name+version' procedure.
This allows tests to run as expected even in the presence of
replacements among the bootstrap packages, such as Perl (commit
d8173f21f7).
* tests/cpan.scm: Add (%graft? #f).
* tests/derivations.scm: Likewise.
* tests/graph.scm: Likewise.
* tests/monads.scm: Likewise.
* tests/profiles.scm: Likewise.
* tests/gexp.scm: Likewise.
("gexp->derivation vs. grafts"): Explicitly reenable grafting before,
and disable it after, using 'set-grafting'.
The Perl replacement added in d8173f2 leads some tests to involve
grafting, which in turn triggers derivation builds that rebuild the
world. Work around that.
* tests/packages.scm: Add call to '%graft?'.
("package-derivation, direct graft")
("package-cross-derivation, direct graft"): Comment out.
Reported by Mark H Weaver.
* guix/scripts/build.scm (options->derivations): When SRC and GRAFT? are
true, use the source of P's replacement.
* tests/guix-build.sh: Add test.
This provides the ability to use numbers in package names.
Fixes <http://bugs.gnu.org/19219>.
* guix/utils.scm (package-name->name+version): New procedure.
* gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument.
Use the previous method when no package is found.
(specification->package+output, specification->package): Adapt
documentation to new syntax.
* doc/guix.texi (Invoking guix package, Invoking guix import): Likewise.
* guix/ui.scm (package-specification->name+version+output): Likewise.
* guix/scripts/import/hackage.scm (show-help): Likewise.
* tests/guix-build.sh: Adapt to new syntax.
* tests/guix-lint.sh: Likewise.
* tests/guix-package.sh: Likewise.
* tests/ui.scm ("package-specification->name+version+output"): Likewise.
* tests/utils.scm ("package-name->name+version"): Likewise.
* NEWS: Mention new syntax.
Fixes <http://bugs.gnu.org/22139>.
* guix/grafts.scm (graft-derivation): Rename to...
(graft-derivation/shallow): ... this.
(graft-origin-file-name, item->deriver, non-self-references)
(cumulative-grafts, graft-derivation): New procedures
* tests/grafts.scm ("graft-derivation, grafted item is a direct
dependency"): Clarify title. Use 'grafted' instead of 'graft' to refer
to the grafted derivation.
("graft-derivation, grafted item is an indirect dependency")
("graft-derivation, no dependencies on grafted output"): New tests.
* guix/packages.scm (input-graft): Change to take a package instead of
an input.
(input-cross-graft): Likewise.
(fold-bag-dependencies): New procedure.
(bag-grafts): Rewrite in terms of 'fold-bag-dependencies'.
* tests/packages.scm ("package-derivation, indirect grafts"): Comment out.
* doc/guix.texi (Security Updates): Mention run-time dependencies and
recursive grafting.
Before that, outputs of a derivation could be left referring to the
ungrafted version of the derivation.
* guix/grafts.scm (graft-derivation)[outputs]: Change to a list of
name/file pairs.
* guix/grafts.scm (graft-derivation)[build]: Add 'old-outputs' variable
and use it when computing 'mapping'. Use 'mapping' directly.
* tests/grafts.scm ("graft-derivation, multiple outputs"): New test.
* guix/store.scm (read-path-info): Use #f when we get the empty string
for DERIVER.
* guix/scripts/publish.scm (narinfo-string): Adjust accordingly.
* tests/store.scm ("path-info-deriver"): New test.
Before that, /nar requests could succeed if the requested store item
exists but is invalid (although such requests were unlikely because the
corresponding narinfo request would have failed.)
* guix/scripts/publish.scm (render-nar): Add 'store' parameter. Use
'valid-path?' instead of 'file-exists?'.
(make-request-handler): Adjust 'render-nar' call accordingly.
* tests/publish.scm ("/nar/invalid"): New test.
Fixes <http://bugs.gnu.org/19816>.
* guix/scripts/environment.scm (evaluate-input-search-paths)
(build-inputs): Delete.
(evaluate-profile-search-paths, strip-input-name)
(package-or-package+output?, package-environment-inputs)
(build-environment, inputs->profile-derivations): New procedures.
(create-environment, show-search-paths, launch-environment)
(launch-environment/container): Replace 'inputs' argument
with 'profile' argument.
(package+propagated-inputs): Strip off names off of input tuples.
(options/resolve-packages): Handle input tuples that specify an output
in expressions.
(guix-environment): Convert inputs into a profile to use in the
environment. Remove non-package inputs such as origins from
environment inputs.
* doc/guix.texi ("invoking guix environment"): Document package+output
tuples for --expression option.
* tests/guix-environment.sh: Update tests.
* tests/guix-environment-container.sh: Likewise.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* guix/scripts/build.scm (transform-package-source): Return a procedure
that expects a single object rather than a list of packages.
(options->transformation): Rewrite to precompute the list of applicable
transformations and to return a procedure that expects a single object
rather than a list of objects.
(options->derivations): Adjust accordingly.
* tests/scripts-build.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* guix/packages.scm <package>: Use '@' in record printer.
* guix/import/cabal.scm <cabal-package>: Likewise
* guix/import/elpa.scm <elpa-package>: Likewise.
* tests/packages.scm: Adapt to it.
* guix/tests/lint.scm ("patches: file names", "patches: not found"): Use
'dummy-origin'. 'sha256' field was wrongly set to a string instead of a
bytevector.
Fixes <http://bugs.gnu.org/22281>.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.
* gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace
'search --file' command in the output with whatever 'grub-root-search'
returns.
(grub-root-search): New procedure.
(grub-configuration-file): Add 'store-fs' parameter. Use
'grub-root-search' instead of hard-coded 'search --file' commands.
* gnu/system.scm (store-file-system,
operating-system-store-file-system): New procedures.
(operating-system-grub.cfg): Use it, and adjust call to
'grub-configuration-file'.
* tests/system.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
Fixes <http://bugs.gnu.org/22391>.
* tests/cran.scm (beautify-description: use double spacing,
beautify-description: transform fragment into sentence). Move
from here ...
* tests/import-utils.scm: ... to here. New file.
* Makefile.am (SCM_TESTS): Add import-utils.
* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.
* guix/scripts/package.scm (find-packages-by-description): Change 'rx'
parameter to 'regexps'.
[matches-all?, matches-one?]: New procedures.
Use them.
(process-query): Collect regexps from all 'search' queries, and pass
them to 'find-packages-by-description'.
* tests/guix-package.sh: Add tests.
* doc/guix.texi (Invoking guix package): Document it.
Before that it would include #f for most origins since that the default
value of 'origin-patch-guile'.
* guix/scripts/graph.scm (bag-node-edges): When 'origin-patch-guile'
returns #f, use (default-guile).
* tests/graph.scm ("bag DAG, including origins"): Check for an edge from
O to (default-guile).
Fixes <http://bugs.gnu.org/22280>.
Reported by Leo Famulari <leo@famulari.name>.
* guix/scripts/graph.scm (%bag-emerged-node-type)[edges]: Mimic
%BAG-NODE-TYPE. This is a followup to 38b92da.
* guix/packages.scm (package-transitive-native-search-paths): New
procedure.
* tests/packages.scm ("package-transitive-native-search-paths"): New
test.
* guix/derivations.scm (substitution-oracle): Add #:mode parameter and
honor it.
(derivation-prerequisites-to-build): Likewise.
[derivation-built?]: Take it into account.
* guix/ui.scm (show-what-to-build): Add #:mode parameter. Pass it to
'substitute-oracle' and 'derivations-prerequisites-to-build'.
* tests/derivations.scm ("derivation-prerequisites-to-build in 'check'
mode"): New test.
* guix/store.scm (%protocol-version): Set minor to 15.
(build-mode): New enumerate type.
(build-things): Add 'mode' parameter; pass it to the RPC.
* tests/store.scm ("build-things, check mode"): New check.
* guix/scripts/lint.scm (patch-file-name): New procedure.
(check-vulnerabilities): Use it to filter out patched vulnerabilities.
* tests/lint.scm ("cve: one patched vulnerability"): New test.
* gnu/services/dmd.scm (assert-no-duplicates): Rename to...
(assert-valid-graph): ... this.
[provisions]: New variable.
[assert-satisfied-requirements]: New procedure.
Use it.
* tests/guix-system.sh: Add test with unmet dmd requirements.
Fixes <http://bugs.gnu.org/21958>.
* guix/scripts/environment.scm (status->exit-code): New procedure.
(exit/status, primitive-exit/status): Use it.
* tests/guix-environment-container.sh: Add test.
Fixes <http://bugs.gnu.org/21410>.
Reported by Alex Vong <alexvong1995@gmail.com>.
* tests/guix-environment-container.sh: Exit with 77 when
'((@@ (guix scripts environment) assert-container-features))' fails.
Fixes <http://bugs.gnu.org/21817>.
Reported by Petter Berntsen <petter@mykolab.ch>.
* guix/scripts/gc.scm (guix-gc)[assert-no-extra-arguments]: New
procedure.
Use it for actions 'collect-garbage', 'optimize', and 'verify'.
* tests/guix-gc.sh: Add tests.
Partly fixes <http://bugs.gnu.org/20255>.
* guix/scripts/package.scm (search-path-environment-variables): Change
'profile' to 'profiles'; expect it to be a list.
(display-search-paths): Likewise.
(%default-options): Remove 'profile' entry.
(%options) <--profile>: Keep previous values associated with 'profile'
in RESULT.
(guix-package)[process-actions, process-query]: Handle the possible
lack of 'profile' pair in OPTS.
Ludovic Courtès
Efraim Flashner
Eric Bavier
David Craven
Mark H Weaver
Alex Sassmannshausen
Cyril Roelandt
宋文武
Mathieu Lirzin
David Thompson
David Thompson
Alex Kost
Ben Woodcroft
Ricardo Wurmus
Federico Beffa