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1753 Commits (73fa220b431253cdb1f716c004df713f5c2fb6ed)

Author SHA1 Message Date
Ricardo Wurmus 73fa220b43
gnu: r-motifbreakr: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.6.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 336b110f69
gnu: r-scone: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus fd0851ee97
gnu: r-chippeakanno: Update to 3.26.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus acc62073be
gnu: r-ensembldb: Update to 2.16.3. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.3.
 2021-07-28 22:26:55 +02:00
Tobias Geerinckx-Rice 5079aa2afd
gnu: r-structuralvariantannotation: Update to 1.8.1. 
The previous 1.8.0 source tarball has vanished.

* gnu/packages/bioconductor.scm (r-structuralvariantannotation):
Update to 1.8.1.
[propagated-inputs]: Add r-genomicfeatures.
 2021-07-25 19:39:11 +02:00
Ricardo Wurmus 4140b66837
gnu: r-gviz: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 564142d25e
gnu: r-catalyst: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus c4ffceb0c2
gnu: r-rhdf5lib: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus e957d6c93b
gnu: r-bioconcotk: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 1cbcf54204
gnu: r-biocstyle: Update to 2.20.2. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 23abd7b6b6
gnu: r-mixomics: Update to 6.16.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 3d539883ca
gnu: r-rsubread: Update to 2.6.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.3.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus a94d1e3b4c
gnu: r-annaffy: Update to 1.64.2. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.64.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 344c901a4c
gnu: r-clusterprofiler: Update to 4.0.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus a5e6826020
gnu: r-enrichplot: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 209642912d
gnu: r-dose: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 072533f579
gnu: r-diffbind: Update to 3.2.4. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.4.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 9496f34e23
gnu: r-systempiper: Update to 1.26.3. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.3.
[propagated-inputs]: Add r-crayon and r-s4vectors.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus ea52ad7d4f
gnu: r-mzr: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 8936e45327
gnu: r-limma: Update to 3.48.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus dfe8e5cca6
gnu: r-genomeinfodb: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus fd00ed8ff8
gnu: r-ensembldb: Update to 2.16.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.2.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 3c60e8d5e5
gnu: r-edaseq: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus f8d7d07679
gnu: r-biocparallel: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 03c9d86432
gnu: r-biomart: Update to 2.48.2. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.2.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 74bfaf92db
gnu: r-annotationhub: Update to 3.0.1. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 4aa90cb4b3
gnu: Add r-cistopic-next. 
* gnu/packages/bioconductor.scm (r-cistopic-next): New variable.
 2021-06-29 12:28:44 +02:00
Ricardo Wurmus 4fb2b5cef8
gnu: r-cistopic: Update to 2.1.0. 
* gnu/packages/bioconductor.scm (r-cistopic): Update to 2.1.0.
 2021-06-28 19:23:49 +02:00
Ricardo Wurmus c44271445a
gnu: r-monocle3: Update to 1.0.0. 
* gnu/packages/bioconductor.scm (r-monocle3): Update to 1.0.0.
[propagated-inputs]: Add r-batchelor, r-leidenbase, and r-rsample.
 2021-06-21 17:53:26 +02:00
Ricardo Wurmus 7209beb694
gnu: Add r-leidenbase. 
* gnu/packages/bioconductor.scm (r-leidenbase): New variable.
 2021-06-21 17:53:26 +02:00
Ricardo Wurmus a41bddd29d
gnu: Add r-batchelor. 
* gnu/packages/bioconductor.scm (r-batchelor): New variable.
 2021-06-21 17:53:26 +02:00
Ricardo Wurmus 278e1c090e
gnu: Add r-residualmatrix. 
* gnu/packages/bioconductor.scm (r-residualmatrix): New variable.
 2021-06-21 17:53:26 +02:00
Ricardo Wurmus 111aa862ec
gnu: r-monocle3: Add missing input. 
* gnu/packages/bioconductor.scm (r-monocle3)[propagated-inputs]: Add
r-assertthat.
 2021-06-21 17:53:25 +02:00
Ricardo Wurmus ef5468ff0e
gnu: Add r-chicago. 
* gnu/packages/bioconductor.scm (r-chicago): New variable.
 2021-06-17 14:57:47 +02:00
Ricardo Wurmus 88d8b4ece0
gnu: r-gviz: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 45f1e079a5
gnu: r-scater: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 06fb533c28
gnu: r-rhdf5lib: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus e4c2155263
gnu: r-biocstyle: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 46178051d5
gnu: r-enrichplot: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus c5b7ade1c6
gnu: r-biocsingular: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.8.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 79b67d2f54
gnu: r-diffbind: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.2.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 005d3d4058
gnu: r-biostrings: Update to 2.60.1. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 495a9cff6d
gnu: r-biomart: Update to 2.48.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.1.
[propagated-inputs]: Add r-xml2.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 49e8978452
gnu: r-annotationdbi: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus 8f12002f6e
gnu: r-sushi: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.30.0.
 2021-06-05 09:12:58 +02:00
Ricardo Wurmus abe7628a05
gnu: r-guitar: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.8.0.
 2021-06-05 09:12:58 +02:00
Ricardo Wurmus 3a5642d72e
gnu: r-chromstar: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.18.0.
 2021-06-05 09:12:58 +02:00
Ricardo Wurmus 3e2052e7da
gnu: r-snpstats: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.42.0.
 2021-06-05 09:12:58 +02:00
Ricardo Wurmus 8fa5a4d753
gnu: r-pathview: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.32.0.
 2021-06-05 09:12:58 +02:00
Ricardo Wurmus b4cea45e7c
gnu: r-ldblock: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.0.
 2021-06-05 09:12:58 +02:00