10208952ea
environment: Add tests for '--profile'.
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This is a followup to a643deac2d
2021-10-25 19:02:32 +02:00
746584e0ca
shell: By default load the local 'manifest.scm' or 'guix.scm' file.
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* guix/scripts/shell.scm (parse-args): Add call to 'auto-detect-manifest'.
(authorized-directory-file, authorized-shell-directory?)
(find-file-in-parent-directories, auto-detect-manifest): New procedures.
* tests/guix-shell.sh: Add test.
* doc/guix.texi (Invoking guix shell): Document it.
2021-10-25 19:02:23 +02:00
80edb7df65
Add 'guix shell'.
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* guix/scripts/shell.scm, tests/guix-shell.sh: New files.
* Makefile.am (MODULES): Add 'shell.scm'.
(SH_TESTS): Add 'tests/guix-shell.sh'.
* guix/scripts/environment.scm (show-environment-options-help): New
procedure.
(show-help): Use it.
(guix-environment*): New procedure.
(guix-environment): Use it.
* po/guix/POTFILES.in: Add it.
* doc/guix.texi (Features): Refer to "guix shell"
(Invoking guix package): Likewise.
(Development): Likewise.
(Invoking guix shell): New node.
(Invoking guix environment): Add deprecation warning.
(Debugging Build Failures): Use 'guix shell' in examples.
(Invoking guix container): Refer to 'guix shell'.
(Invoking guix processes, Virtualization Services): Adjust examples to
use 'guix shell'.
* doc/contributing.texi (Building from Git): Refer to 'guix shell'.
* etc/completion/bash/guix: Handle "shell".
2021-10-25 18:58:18 +02:00
23f99f1a29
profiles: Add 'package->development-manifest'.
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* guix/profiles.scm (package->development-manifest): New procedure.
* guix/scripts/environment.scm (input->manifest-entry)
(package-environment-inputs): Remove.
* guix/scripts/environment.scm (options/resolve-packages): Use
'package->development-manifest' instead of 'package-environment-inputs'.
* tests/profiles.scm ("package->development-manifest"): New test.
2021-10-25 15:29:42 +02:00
fb368f4e76
packages: Add 'package-development-inputs'.
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* guix/packages.scm (package-development-inputs): New procedure.
* guix/scripts/environment.scm (package-environment-inputs): Use it.
* tests/packages.scm ("package-development-inputs")
("package-development-inputs, cross-compilation"): New tests.
* doc/guix.texi (package Reference): Document it.
2021-10-25 15:29:39 +02:00
e4276fc4c1
gnu: mspdebug: Update to 0.25-0.4c4d94e.
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* gnu/packages/debug.scm (mspdebug): Update to 0.25-0.4c4d94e.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-25 14:32:59 +02:00
1ea032fb5f
services: rsync: support binding rsync to a specific IP address
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* gnu/services/rsync.scm (<rsync-configuration>)[address]: New field.
(rsync-config-file): Honor it.
* doc/guix.texi (Networking Services): Document new address rsync
configuration option.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-25 14:32:59 +02:00
69b249ecae
gnu: Add lttng-tools.
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* gnu/packages/linux.scm (lttng-tools): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-25 14:32:59 +02:00
b87fe805aa
gnu: python-peachpy: Make output deterministic.
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Fixes <https://issues.guix.gnu.org/50672 >.
This makes users of python-peachpy bit-reproducible, such as nnpack.
* gnu/packages/patches/python-peachpy-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-peachpy)[source]: Use it.
Co-authored-by: Kyle Meyer <kyle@kyleam.com>
2021-10-25 14:32:59 +02:00
cab17c1c37
gnu: zimg: Update to 3.0.3.
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* gnu/packages/image.scm (zimg): Update to 3.0.3.
2021-10-25 13:58:57 +02:00
8e30922767
gnu: mariadb: Don’t run tests in parallel on ppc64le targets.
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* gnu/packages/databases.scm (mariadb)[arguments]: Set ‘#:parallel-tests?’
for powerpc64le machines.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-25 14:11:11 +03:00
4e4516599a
gnu: python-pandas: Update to 1.3.4.
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4.
2021-10-25 14:01:32 +03:00
c8c35af8ac
gnu: python-pandas: Fix building with pytest-6.
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* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom
'check phase adjust to not fail tests with missing test data.
2021-10-25 14:01:32 +03:00
a0400dc9a5
gnu: python-pandas: Honor #:tests? flag.
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* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
2021-10-25 14:01:32 +03:00
ab961fe542
gnu: python-cython: Honor #:tests? flag.
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* gnu/packages/python-xyz.scm (python-cython)[arguments]: Adjust custom
'check phase to honor the #:tests? flag.
2021-10-25 14:01:32 +03:00
2de88bcd7a
gnu: python-cython: Update to 0.29.24.
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* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.24.
[arguments]: Adjust custom 'check phase to skip one test. Remove
trailing #t from phases.
2021-10-25 14:01:32 +03:00
988eb73d5b
gnu: gnuradio: Disable a randomly failing test.
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* gnu/packages/radio.scm (gnuradio)[arguments]: Add qa_rotator_cc to the list
of disabled tests.
2021-10-25 11:45:53 +02:00
78a7c7f078
gnu: python-pyqtgraph: Disable one failing test.
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* gnu/packages/python-xyz.scm (python-pyqtgraph)[arguments]: Add test_reload
to list of disabled tests.
2021-10-25 11:31:56 +02:00
f3496c2b5c
gnu: hexchat: Fix build.
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* gnu/packages/messaging.scm (hexchat)[arguments]: Use GUIX_PYTHONPATH instead
of PYTHONPATH in 'wrap-program' phase.
2021-10-25 11:13:04 +02:00
bb524f43fb
gnu: Add vim-gitgutter.
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* gnu/packages/vim.scm (vim-gitgutter): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-25 11:02:40 +03:00
ebd999c5d8
gnu: Add vim-mucomplete.
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* gnu/packages/vim.scm (vim-mucomplete): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-25 10:16:37 +03:00
fb3b26b2ab
gnu: reprotest: Update to 0.7.18.
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* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.18.
2021-10-24 17:28:46 -07:00
2640da8410
gnu: java-cisd-args4j: Copy instead of unpacking input.
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* gnu/packages/java.scm (java-cisd-args4j)[arguments]: Do not unpack
build-resources input; just copy the contents.
2021-10-24 23:26:59 +00:00
41e5c12c4a
gnu: sailfish: Use TBB 2020.
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* gnu/packages/bioinformatics.scm (sailfish)[inputs]: Replace tbb with
tbb-2020.
2021-10-24 21:38:25 +00:00
1bf55a4850
gnu: sailfish: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Remove trailing #T in
build phases...
[inputs]: ...and in the origin snippet of "rapmap".
2021-10-24 21:37:39 +00:00
4392783232
gnu: sailfish: Do not attempt to unpack a directory.
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patch-and-repack no longer outputs a compressed archive when the input was a
directory.
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Adjust build phase
'prepare-rapmap.
2021-10-24 21:35:57 +00:00
57c233b37b
gnu: jellyfish: Remove Ruby bindings.
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These bindings no longer build and we have no package that would need them.
* gnu/packages/bioinformatics.scm (jellyfish)[outputs]: Remove "ruby" output.
[arguments]: Remove option for building Ruby bindings.
[native-inputs]: Remove ruby.
2021-10-24 21:34:26 +00:00
b5f45a21c2
lint: Add description check for common typos.
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Fixes: https://issues.guix.gnu.org/44675
* guix/lint.scm (check-description-typo): Add check for occurences of
"This packages", "This modules", "allows to" and "permits to" in package
descriptions.
* tests/lint.scm: Add tests for "This packages" and "allows to".
2021-10-24 14:26:12 -07:00
da526f33f2
gnu: cutadapt: Regenerate Cython files.
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* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Add phase
'always-cythonize.
2021-10-24 21:23:20 +00:00
65be27dcfd
gnu: u-boot: Update to 2021.10.
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* gnu/packages/bootloaders.scm (%u-boot-allow-disabling-openssl-patch): New variable.
(u-boot): Update to 2021.10.
Add patch fixing build without openssl.
(u-boot-qemu-riscv64-smode):
Add patch fixing build without openssl.
(u-boot-tools): Adjust phases to disable CONFIG_TOOLS_LIBCRYPTO.
(make-u-boot-package): Add phase disabling CONFIG_TOOLS_LIBCRYPTO.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add patch.
2021-10-24 13:51:37 -07:00
efe0c3d759
gnu: arm-trusted-firmware: Update to 2.5.
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* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.5.
2021-10-24 13:51:34 -07:00
3eeae68af1
gnu: python-requests-unixsocket: Fix tests.
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* gnu/packages/python-web.scm (python-requests-unixsocket)[arguments]: Do not
run tests with --pep8 option; only run tests when enabled.
2021-10-24 20:49:46 +00:00
be5216efcc
gnu: python2-renpy: Update to 7.4.10.
...
* gnu/packages/game-development.scm (python2-renpy): Update to 7.4.10.
[snippet]: No longer drop "gen" directory, it's not in this release.
2021-10-24 22:28:28 +02:00
1636acaac5
gnu: python2-pygame-sdl2: Update to renpy-version 7.4.10.
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* gnu/packages/game-development.scm (python2-pygame-sdl2): Update to
renpy-version 7.4.10.
2021-10-24 22:27:31 +02:00
b67013c8ca
gnu: python-mpmath: Update to 1.2.1.
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* gnu/packages/python-xyz.scm (python-mpmath): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Run tests directly with pytest; set the version with setuptools.
[native-inputs]: Add python-setuptools-scm.
2021-10-24 20:10:26 +00:00
722c4685f0
gnu: java-commons-io: Replace %build-inputs with gexp.
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* gnu/packages/java.scm (java-commons-io)[arguments]: Do not use
%build-inputs; use gexp with this-package-native-inputs instead.
2021-10-24 20:02:54 +00:00
4faca03bed
gnu: python-dnaio: Update to 0.6.0.
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* gnu/packages/bioinformatics.scm (python-dnaio): Update to 0.6.0.
2021-10-24 19:47:20 +00:00
88919aa8a2
gnu: python-xopen: Update to 0.8.2.
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* gnu/packages/python-xyz.scm (python-xopen): Update to 0.8.2.
2021-10-24 19:47:02 +00:00
238f47c76f
gnu: macs: Fix build by setting HOME.
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* gnu/packages/bioinformatics.scm (macs)[arguments]: Add build phase to set
HOME variable.
2021-10-24 19:09:35 +00:00
1d01043a4f
gnu: methyldackel: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Remove trailing #T
from build phase.
2021-10-24 19:01:22 +00:00
2820b03509
gnu: methyldackel: Pass -fcommon to compiler.
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* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Add -fcommon to
CFLAGS.
2021-10-24 19:00:53 +00:00
ab8c08c519
gnu: disarchive: Update to 0.3.0.
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* gnu/packages/backup.scm (disarchive): Update to 0.3.0.
[source]: Remove cross-compilation patch.
[arguments]: Remove field.
* gnu/packages/patches/disarchive-cross-compilation.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-10-24 14:56:30 -04:00
cc331ad7eb
gnu: flexbar: Use TBB 2020.
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* gnu/packages/bioinformatics.scm (flexbar)[inputs]: Replace tbb with
tbb-2020.
2021-10-24 18:50:09 +00:00
084bdf9d69
gnu: flexbar: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (flexbar)[arguments]: Remove trailing #T
from all build phases.
2021-10-24 18:49:43 +00:00
d0a1d798ee
gnu: bwa: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove trailing #T in
build phase.
2021-10-24 18:48:53 +00:00
2da99b671e
gnu: bwa: Pass -fcommon to compiler.
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* gnu/packages/bioinformatics.scm (bwa)[arguments]: Add -fcommon option to
CFLAGS.
2021-10-24 18:48:20 +00:00
724972bcca
gnu: bowtie1: Use TBB 2020.
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* gnu/packages/bioinformatics.scm (bowtie1)[inputs]: Replace tbb with
tbb-2020.
2021-10-24 18:47:45 +00:00
f336cc4fe7
gnu: bowtie: Replace invalid characters.
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* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace invalid quotes
with straight quotes in the 'configure phase.
2021-10-24 18:44:57 +00:00
505d53a4b4
gnu: Add clingo.
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* gnu/packages/maths.scm (clingo): New variable.
2021-10-24 20:25:02 +02:00
2dfc574b13
gnu: Add clasp.
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* gnu/packages/maths.scm (clasp): New variable.
2021-10-24 20:25:02 +02:00
Ludovic Courtès
Ludovic Courtès
Morgan Smith
Jacob Adams
Olivier Dion
Guillaume Le Vaillant
Thiago Jung Bauermann
Efraim Flashner
Foo Chuan Wei
Vagrant Cascadian
Ricardo Wurmus
Vagrant Cascadian
Liliana Marie Prikler
Timothy Sample