746416b44a
gnu: Add python-scikit-fem.
...
* gnu/packages/python-science.scm (python-scikit-fem): New variable.
2023-07-29 14:25:03 -03:00
01412c6c6a
gnu: python-distributed: Update to 2023.7.0.
...
* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
2023-07-15 13:36:02 +02:00
ea81a0417a
gnu: Add python-plotnine.
...
* gnu/packages/python-science.scm (python-plotnine): New variable.
2023-07-13 22:29:24 +02:00
d4e9ad2d42
gnu: python-pandas-flavor: Update to 0.5.0.
...
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0.
[propagated-inputs]: Add python-lazy-loader and python-packaging.
[home-page]: Update.
2023-06-29 17:01:56 +01:00
2a7ca17068
gnu: python-distributed: Disable timeout test.
...
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_nanny_timeout, because it times out.
2023-06-29 12:01:22 +02:00
5cf9880dd4
gnu: python-trimesh: Update to 3.22.1.
...
* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1.
[arguments]<#:phases>: Update path in 'fix-build' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-25 23:46:03 +02:00
cbcab52fd1
gnu: Add python-pytensor.
...
* gnu/packages/python-science.scm (python-pytensor): New variable.
2023-06-25 10:48:05 -03:00
a38f5a71ad
gnu: Add python-xarray-einstats.
...
* gnu/packages/python-science.scm (python-xarray-einstats): New variable.
2023-06-25 10:43:22 -03:00
b08a1f3ce1
gnu: python-xarray: Update to 2023.6.0.
...
* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the check phase.
2023-06-25 10:43:22 -03:00
6bc2fbc14c
gnu: Add python-einops.
...
* gnu/packages/python-science.scm (python-einops): New variable.
2023-06-25 10:43:22 -03:00
24fc0d506a
gnu: python-pyvista: Update to 0.39.1.
...
* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1.
[propagated-inputs]: Add python-pooch, remove python-appdirs.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-06-20 22:16:14 +01:00
4557c83a7d
gnu: python-distributed: Update to 2023.4.1.
...
* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
2023-05-11 15:59:22 +02:00
96c51a9dbf
gnu: python-scikit-optimize: Fix build with newer numpy and sklearn.
...
* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
2023-05-10 19:27:07 +02:00
12c529c071
gnu: python-bottleneck: Honor #:tests? flag.
...
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
2023-05-08 12:42:10 +03:00
4a23812c7c
gnu: python-bottleneck: Update to 1.3.7.
...
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
2023-05-08 12:42:09 +03:00
5409ae48af
gnu: python-distributed: Fix build.
...
* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
2023-04-26 11:17:41 +02:00
3bacd3c76a
Merge branch 'master' into core-updates.
...
Conflicts:
gnu/local.mk
gnu/packages/build-tools.scm
gnu/packages/certs.scm
gnu/packages/check.scm
gnu/packages/compression.scm
gnu/packages/cups.scm
gnu/packages/fontutils.scm
gnu/packages/gnuzilla.scm
gnu/packages/guile.scm
gnu/packages/ibus.scm
gnu/packages/image-processing.scm
gnu/packages/linux.scm
gnu/packages/music.scm
gnu/packages/nss.scm
gnu/packages/pdf.scm
gnu/packages/python-xyz.scm
gnu/packages/qt.scm
gnu/packages/ruby.scm
gnu/packages/shells.scm
gnu/packages/tex.scm
gnu/packages/video.scm
gnu/packages/vulkan.scm
gnu/packages/web.scm
gnu/packages/webkit.scm
gnu/packages/wm.scm
2023-04-14 17:15:08 -04:00
a3bfb86738
gnu: python-scipy: Update to 1.10.1.
...
* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add #:build-backend argument.
Remove loosen-requirements, build and install phases.
[native-inputs]: Remove python-pypa-build.
2023-04-11 17:22:35 -04:00
896982f357
gnu: python-scikit-allel: Use pyproject-build-system.
...
* gnu/packages/python-science.scm (python-scikit-allel): Move up to create
alphabetic order.
[build-system]: Use pyproject-build-system.
[arguments]: Provide test flags instead of overriding 'check phase; split out
build step into new 'build-ext phase. Disable roh_mhmm tests.
2023-03-24 18:23:01 +01:00
6d132c5ebf
gnu: Add python-scikit-optimize.
...
* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
2023-03-24 18:03:30 +01:00
34f684371e
gnu: Add python-libneuroml.
...
* gnu/packages/python-science.scm (python-libneuroml): New variable.
2023-03-21 13:58:42 +01:00
9f882daf11
gnu: Add python-pylems.
...
* gnu/packages/python-science.scm (python-pylems): New variable.
2023-03-21 13:56:47 +01:00
e24b9b42bc
gnu: Add python-pydicom.
...
* gnu/packages/python-science.scm (python-pydicom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-08 16:11:45 +01:00
7f380a2e26
gnu: python-sgp4: Move to astronomy.
...
* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm.
[description]: Expand description, annotate acronyms, add link to CelesTrak.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05 22:22:20 +01:00
6468d9c131
gnu: python-sgp4: Update to 2.21.
...
The latest version passes build on aarch64-linux system.
* gnu/packages/python-science.scm (python-sgp4): Update to 2.21.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05 22:22:20 +01:00
9ddc4e5b03
gnu: python-msgpack-numpy: Update to 0.4.8.
...
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
2022-12-02 15:04:15 +01:00
ba8679fb24
gnu: Add python-tspex.
...
* gnu/packages/python-science.scm (python-tspex): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-11-11 12:12:04 +01:00
b19c12c2d7
gnu: Add python-pyts.
...
* gnu/packages/python-science.scm (python-pyts): New variable.
2022-11-04 19:53:31 +01:00
70cac2829f
gnu: Add python-simple-pid.
...
* gnu/packages/python-science.scm (python-simple-pid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-18 14:41:10 +02:00
f66067febc
Merge branch 'master' into staging
2022-09-29 07:26:37 +02:00
05c13b3149
gnu: Add python-simplespectral.
...
* gnu/packages/python-science.scm (python-simplespectral): New variable.
2022-09-28 11:31:49 +02:00
3c6e220d81
Merge branch 'master' into staging.
...
With resolved conflicts in:
gnu/local.mk
gnu/packages/crates-io.scm
2022-09-27 14:27:28 -04:00
ab6931483b
gnu: Add python-vaex-core.
...
* gnu/packages/python-science.scm (python-vaex-core): New variable.
2022-09-25 21:24:34 +02:00
2266ec5eb1
gnu: python-cython: Remove duplicate version.
...
* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable.
* gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from
PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON.
2022-09-18 16:26:18 +02:00
ce3b51a4c6
gnu: python-pandas: Update to 1.4.4.
...
* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4.
[native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32.
2022-09-18 16:18:36 +02:00
888dfc8eb6
gnu: python-scipy: Update to 1.9.1.
...
* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1.
[source]: Switch to GIT-FETCH.
[outputs]: Remove.
[arguments]: Don't disable Pythran. Don't configure OpenBLAS which is now
discovered by pkg-config. Do a "manual" PEP 517 style build. Make
install-doc phase conditional on the presence of Sphinx. Simplify tests.
[propagated-inputs]: Add PYTHON-PYTHRAN.
[native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC,
PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS. Add
GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON.
2022-09-16 18:42:21 +02:00
8bd7cd34bf
gnu: python-pingouin: Don't pin scikit-learn version.
...
* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase.
2022-09-14 21:08:34 +02:00
e3ed1d09f9
gnu: python-pingouin: Update to 0.5.2.
...
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.2.
[arguments]: Adjust outdated substitution.
2022-09-11 23:41:51 +02:00
ad1d3f98b1
gnu: Add comments to the bottom of a few package modules.
...
This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.
If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.
* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
2022-09-10 10:45:27 +01:00
29491482a1
gnu: python-pyvista: Update to 0.36.1.
...
* gnu/packages/python-science.scm (python-pyvista): Update to 0.36.1.
Signed-off-by: Marius Bakke <marius@gnu.org>
2022-09-07 22:02:40 +02:00
7e13054373
gnu: python-pyvista: Update to 0.35.2.
...
* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-08-02 20:59:15 +03:00
4bc130dcc0
gnu: Add python-geosketch.
...
* gnu/packages/python-science.scm (python-geosketch): New variable.
2022-08-02 14:37:38 +02:00
d4b0dc047f
gnu: Add python-fbpca.
...
* gnu/packages/python-science.scm (python-fbpca): New variable.
2022-08-02 14:37:38 +02:00
a15b769c2f
gnu: python-pyvista: Update to 0.35.1.
...
* gnu/packages/python-science (python-pyvista): Update to 0.35.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-07-15 09:46:51 +01:00
684c718e6a
gnu: Add python-opt-einsum.
...
* gnu/packages/python-science.scm (python-opt-einsum): New variable.
2022-07-08 18:41:35 +02:00
486251d440
gnu: Add python-deepdish.
...
* gnu/packages/python-science.scm (python-deepdish): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 16:04:23 +02:00
e9e05dd129
gnu: python-modin: Update to 0.15.1.
...
* gnu/packages/python-science.scm (python-modin): Update to 0.15.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-26 01:00:18 +02:00
aa718586fa
gnu: python-scikit-image: Update to 0.19.3.
...
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.3.
2022-06-18 13:07:09 -03:00
b68c87f86a
gnu: Add PyGLM.
...
* gnu/packages/python-science.scm (python-pyglm): New variable.
2022-06-08 23:27:47 -05:00
30413f1180
gnu: Remove python2-scipy.
...
* gnu/packages/python-science.scm (python2-scipy): Delete variable.
(python-scipy)[properties]: Delete field.
2022-05-31 14:53:35 -04:00
Vinicius Monego
Ricardo Wurmus
Arun Isaac
Paul A. Patience
Efraim Flashner
Maxim Cournoyer
Lars-Dominik Braun
Antero Mejr
Sharlatan Hellseher
Navid Afkhami
jgart
Marius Bakke
Guillaume Le Vaillant
Christopher Baines
Greg Hogan
Eric Bavier