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968 Commits (799f066768bacb321ebad84c75b2bbfd269e7cd8)

Author SHA1 Message Date
Ricardo Wurmus efb44ebca4
gnu: r-reqon: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.34.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus 83b7625cae
gnu: r-seqbias: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.36.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus 8112796db1
gnu: r-bigmelon: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.14.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus f4954b0b57
gnu: r-gdsfmt: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus 939ace9624
gnu: r-watermelon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus cad8a5099a
gnu: r-roc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus b32808831c
gnu: r-genie3: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus e677c9b501
gnu: r-cicero: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 93235b1eb3
gnu: r-rcistarget: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus af66e35d31
gnu: r-depecher: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 7bec32fe53
gnu: r-mixomics: Update to 6.12.1.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 32bd0295c8
gnu: r-flowsom: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8d5a83b7c6
gnu: r-cytoml: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8f5e16742d
gnu: r-opencyto: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 372caae6a9
gnu: r-flowstats: Update to 4.0.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus a9af09df17
gnu: r-flowworkspace: Update to 4.0.3.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus bafade83c1
gnu: r-rprotobuflib: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus b347d6c32b
gnu: r-flowclust: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 062789b87a
gnu: r-flowviz: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 3407dfa61f
gnu: r-ggcyto: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 631b12ca71
gnu: r-ncdfflow: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 76b163d616
gnu: r-flowmeans: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus faff2de0da
gnu: r-flowcore: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 3c73d7c5e4
gnu: r-cytolib: Update to 2.0.3.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 0c2573e7f1
gnu: r-consensusclusterplus: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 6954950f4a
gnu: r-flowutils: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5d63f69be9
gnu: r-rsubread: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5ca991bff9
gnu: r-annotatr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 8b6f26e634
gnu: r-biosigner: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.16.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 77334168cf
gnu: r-ropls: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.20.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 905bbb13da
gnu: r-multidataset: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus cb941ca06d
gnu: r-birta: Update to 1.31.0.
* gnu/packages/bioconductor.scm (r-birta): Update to 1.31.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus f50609aba5
gnu: r-birewire: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.20.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 1c5360ac3d
gnu: r-rqc: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus a84abf434d
gnu: r-quasr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 2aff2724ef
gnu: r-rhisat2: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.4.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 201902bc05
gnu: r-sgseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 568c3929b6
gnu: r-rbowtie: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus ca8d80c90c
gnu: r-iclusterplus: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.24.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 173844fc75
gnu: r-biocfilecache: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 989b7bb625
gnu: r-arrmnormalization: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.28.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8e5933a8e4
gnu: r-progeny: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.10.0.
[propagated-inputs]: Add r-dplyr, r-ggplot2, r-ggrepel, r-gridextra, and
r-tidyr.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 297854e682
gnu: r-rbowtie2: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8fdca89b56
gnu: r-zfpkm: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 620cc4d976
gnu: r-webbioc: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.60.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 08c4d31400
gnu: r-widgettools: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.66.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus ee0f746088
gnu: r-wiggleplotr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 996f07b591
gnu: r-wrench: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus ff9f179a0c
gnu: r-xcms: Update to 3.10.1.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus bcd06bdbff
gnu: r-xbseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 1ec10e1987
gnu: r-roar: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.24.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus a37a6ffb2d
gnu: r-yarn: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 70d90ae76d
gnu: r-quantro: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 761c9427bc
gnu: r-yaqcaffy: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.48.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 9ce80f9356
gnu: r-simpleaffy: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.64.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus f0439a1767
gnu: r-gcrma: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.60.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 8a5abc62d5
gnu: r-yapsa: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings, r-bsgenome-hsapiens-ucsc-hg19,
r-doparallel, r-dplyr, r-ggbeeswarm, r-magrittr, and r-pracma.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 63c14717e3
gnu: r-somaticsignatures: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.24.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus a471def062
gnu: r-gtrellis: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.20.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6e397aad32
gnu: r-yamss: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 4eccf8e5e5
gnu: r-ebimage: Update to 4.30.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.30.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus e059ab2503
gnu: r-aucell: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6314938884
gnu: r-allelicimbalance: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 231898d5b9
gnu: r-annotationtools: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.62.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 7866994c03
gnu: r-annotationfuncs: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.38.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6a65ac1537
gnu: r-abaenrichment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 19b39ac579
gnu: r-gofuncr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.8.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus a007de81e5
gnu: r-atacseqqc: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.3.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 785c759617
gnu: r-genomicscores: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.0.0.
[propagated-inputs]: Remove r-bsgenome; add r-delayedarray, r-hdf5array, and r-rhdf5.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus e6fbaf0cc7
gnu: r-motifstack: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus e65783e032
gnu: r-motifbreakr: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus da6a75fe00
gnu: r-motifdb: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.30.0.
[propagated-inputs]: Add r-genomicranges.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 352cfa3434
gnu: r-motiv: Update to 1.43.0.
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.43.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6d02e17139
gnu: r-rgadem: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 7450edca0d
gnu: r-bacon: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.16.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 35bcfaefae
gnu: r-abseqr: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus b391b1e47c
gnu: r-a4: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 2a91c987fd
gnu: r-a4base: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus e47f9f48d4
gnu: r-a4reporting: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6afea4ea93
gnu: r-a4preproc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 33c9c8563d
gnu: r-a4classif: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 4f2112add9
gnu: r-a4core: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus d200b4dc48
gnu: r-annaffy: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.60.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 500f7df840
gnu: r-mlinterfaces: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.68.0.
[propagated-inputs]: Add r-rcpp.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 63c8323ae9
gnu: r-clusterprofiler: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.0.
[propagated-inputs]: Remove r-ggplot2; add r-downloader and r-dplyr.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 43fb14cedc
gnu: r-enrichplot: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.8.1.
[propagated-inputs]: Add r-plyr and r-scatterpie.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 3a80f1cfae
gnu: r-dose: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.14.0.
[propagated-inputs]: Remove r-s4vectors.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1dec455cb8
gnu: r-fgsea: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus b1d76ad0ca
gnu: r-sigpathway: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.56.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 8d30d59adf
gnu: r-anota: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.36.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 621cd90406
gnu: r-gosemsim: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 65e0a7b181
gnu: r-heatplus: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.34.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus f2b686f61a
gnu: r-varianttools: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.30.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus ecb4e16519
gnu: r-triform: Update to 1.29.0.
* gnu/packages/bioconductor.scm (r-triform): Update to 1.29.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 293fb8a147
gnu: r-ioniser: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1465873c6c
gnu: r-linnorm: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus ae1c51a1c1
gnu: r-lumi: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.40.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 5f25d5f80d
gnu: r-methylumi: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.34.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 83e6ffdac1
gnu: r-minfi: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.34.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus e3fbcb28a4
gnu: r-bumphunter: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.30.0.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus debaa0f3ba
gnu: r-siggenes: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.62.0.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus d784a4784f
gnu: r-illuminaio: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.30.0.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus 159e427c9f
gnu: r-geoquery: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.56.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus 3fc1e03949
gnu: r-scone: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus ce9e19bc9b
gnu: r-scdd: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus 22c084ba9d
gnu: r-noiseq: Update to 2.31.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.31.0.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus d1f3c37134
gnu: r-monocle: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus 97cba97aa1
gnu: r-mast: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.14.0.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus ee1e8fee89
gnu: r-icobra: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus 359a084aa3
gnu: r-ihw: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus 0653b8b082
gnu: r-lpsymphony: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.16.0.
[inputs]: Remove gfortran.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:51 +02:00
Ricardo Wurmus 6e2dc9e385
gnu: r-karyoploter: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.0.
[propagated-inputs]: Add r-genomicfeatures.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 1e37caca52
gnu: r-ebseq: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.28.0.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 6a7cfd5f1f
gnu: r-dnacopy: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.62.0.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 866939b76d
gnu: r-copynumber: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.28.0.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 9697afb10e
gnu: r-chipexoqual: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 784d1670b7
gnu: r-savr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.26.0.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 265b645075
gnu: r-destiny: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.2.0.
[propagated-inputs]: Add r-nbconvertr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus a8351d467c
gnu: r-biocsingular: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.4.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus f5864c11a4
gnu: r-biocneighbors: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus ae0fcaa6fd
gnu: r-ruvseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 14f40ae830
gnu: r-dnabarcodes: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 437bc4dda9
gnu: r-inspect: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.18.0.
[propagated-inputs]: Add r-rtracklayer.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 46a973bc24
gnu: r-plgem: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.60.0.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus ee73dea61b
gnu: r-rots: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.16.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus a6251d6e8b
gnu: r-glimma: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7fbd97745b
gnu: r-goseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.40.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus c7be592fb4
gnu: r-ctc: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.62.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 76dd036e16
gnu: r-genomicinteractions: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.22.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 861a903f14
gnu: r-interactionset: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 6b78a91b75
gnu: r-riboseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.22.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7aae05a953
gnu: r-riboprofiling: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus ef1d3231c3
gnu: r-chipcomp: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.18.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 9834c36724
gnu: r-bayseq: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.22.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus f4ef564595
gnu: r-qdnaseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.24.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus de4a352e8a
gnu: r-cghcall: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.50.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus bd93ec4cf0
gnu: r-cghbase: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.48.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 49d589e530
gnu: r-marray: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.66.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus dc24de46ad
gnu: r-chippeakanno: Update to 3.22.2.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7d37c6d914
gnu: r-graph: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.66.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 8cadf253c3
gnu: r-multtest: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.44.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus b47b649ae5
gnu: r-diffbind: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus f9a247590e
gnu: r-qvalue: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus ace82f805f
gnu: r-oligo: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus b628842f7e
gnu: r-oligoclasses: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 53e4201937
gnu: r-geneplotter: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.66.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f94cf0184
gnu: r-reportingtools: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f34dd58e9
gnu: r-regioner: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 07bea01092
gnu: r-hpar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.30.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00